Updated Apr 22, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Polish Lowland Sheepdog (n=108) | Polski Owczarek Nizinny (n=1) |
---|---|---|---|
1016 | 382 371 277 178 | 0.023 | -- |
1040 | 380 371 277 186 | 0.667 | 0.5 |
1067 | 376 373 277 178 | 0.301 | 0.5 |
1068 | 380 373 287 181 | 0.005 | -- |
1156 | 380 373 291 178 | 0.005 | -- |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Polish Lowland Sheepdog (n=108) | Polski Owczarek Nizinny (n=1) |
---|---|---|---|
2014 | 339 322 284 | 0.690 | 0.5 |
2017 | 343 322 280 | 0.296 | 0.5 |
2053 | 343 324 280 | 0.005 | -- |
2067 | 343 322 284 | 0.005 | -- |
2098 | 343 323 282 | 0.005 | -- |
Allele Frequencies
# | Locus Name | Allele | Polish Lowland Sheepdog (n=108) | Polski Owczarek Nizinny (n=1) |
---|---|---|---|---|
1 | AHT121 | 100 | 0.458 | 0.5 |
102 | 0.449 | -- | ||
104 | 0.019 | -- | ||
106 | 0.074 | 0.5 | ||
2 | AHT137 | 131 | 0.301 | 0.5 |
135 | 0.005 | -- | ||
145 | 0.690 | 0.5 | ||
149 | 0.005 | -- | ||
3 | AHTH130 | 121 | 0.056 | -- |
123 | 0.032 | -- | ||
127 | 0.435 | 0.5 | ||
131 | 0.463 | 0.5 | ||
133 | 0.014 | -- | ||
4 | AHTh171-A | 219 | 0.111 | -- |
225 | 0.009 | -- | ||
233 | 0.051 | -- | ||
237 | 0.806 | 1.0 | ||
239 | 0.009 | -- | ||
243 | 0.014 | -- | ||
5 | AHTh260 | 240 | 0.139 | -- |
244 | 0.023 | -- | ||
246 | 0.690 | 1.0 | ||
250 | 0.148 | -- | ||
6 | AHTk211 | 87 | 0.241 | -- |
91 | 0.713 | 1.0 | ||
95 | 0.046 | -- | ||
7 | AHTk253 | 284 | 0.102 | -- |
288 | 0.005 | -- | ||
290 | 0.519 | 1.0 | ||
292 | 0.375 | -- | ||
8 | C22.279 | 116 | 0.236 | -- |
118 | 0.245 | -- | ||
124 | 0.519 | 1.0 | ||
9 | FH2001 | 132 | 0.972 | 0.5 |
144 | 0.028 | 0.5 | ||
10 | FH2054 | 152 | 0.019 | 0.5 |
156 | 0.204 | -- | ||
160 | 0.051 | -- | ||
164 | 0.019 | -- | ||
168 | 0.662 | 0.5 | ||
172 | 0.037 | -- | ||
176 | 0.009 | -- | ||
11 | FH2848 | 232 | 0.333 | 0.5 |
234 | 0.005 | -- | ||
236 | 0.454 | -- | ||
240 | 0.037 | -- | ||
242 | 0.171 | 0.5 | ||
12 | INRA21 | 95 | 0.083 | -- |
101 | 0.917 | 1.0 | ||
13 | INU005 | 124 | 0.685 | 0.5 |
126 | 0.009 | -- | ||
128 | 0.282 | 0.5 | ||
132 | 0.023 | -- | ||
14 | INU030 | 144 | 0.574 | -- |
150 | 0.273 | 1.0 | ||
152 | 0.153 | -- | ||
15 | INU055 | 204 | 0.259 | -- |
210 | 0.477 | 0.5 | ||
218 | 0.264 | 0.5 | ||
16 | LEI004 | 95 | 0.861 | 1.0 |
97 | 0.139 | -- | ||
17 | REN105L03 | 227 | 0.046 | -- |
231 | 0.519 | 0.5 | ||
233 | 0.431 | 0.5 | ||
241 | 0.005 | -- | ||
18 | REN162C04 | 204 | 0.185 | -- |
206 | 0.708 | 1.0 | ||
210 | 0.106 | -- | ||
19 | REN169D01 | 210 | 0.051 | -- |
212 | 0.218 | -- | ||
216 | 0.662 | -- | ||
220 | 0.069 | 1.0 | ||
20 | REN169O18 | 164 | 0.407 | 0.5 |
166 | 0.009 | -- | ||
168 | 0.005 | -- | ||
170 | 0.579 | 0.5 | ||
21 | REN247M23 | 264 | 0.005 | -- |
266 | 0.051 | 1.0 | ||
268 | 0.847 | -- | ||
272 | 0.097 | -- | ||
22 | REN54P11 | 228 | 0.329 | 1.0 |
232 | 0.269 | -- | ||
236 | 0.171 | -- | ||
238 | 0.222 | -- | ||
240 | 0.009 | -- | ||
23 | REN64E19 | 147 | 0.190 | -- |
149 | 0.111 | -- | ||
153 | 0.699 | 1.0 | ||
24 | VGL0760 | 14 | 0.037 | -- |
15 | 0.634 | -- | ||
16 | 0.009 | -- | ||
20.2 | 0.190 | -- | ||
21.2 | 0.130 | 1.0 | ||
25 | VGL0910 | 13 | 0.042 | -- |
14 | 0.287 | 0.5 | ||
15 | 0.093 | -- | ||
16 | 0.144 | 0.5 | ||
19.1 | 0.093 | -- | ||
20.1 | 0.167 | -- | ||
21.1 | 0.167 | -- | ||
22.1 | 0.009 | -- | ||
26 | VGL1063 | 14 | 0.083 | 0.5 |
15 | 0.213 | -- | ||
16 | 0.338 | -- | ||
17 | 0.125 | -- | ||
18 | 0.218 | -- | ||
19 | 0.023 | 0.5 | ||
27 | VGL1165 | 17 | 0.292 | 0.5 |
18 | 0.005 | -- | ||
25 | 0.005 | -- | ||
26 | 0.407 | -- | ||
27 | 0.037 | -- | ||
28 | 0.051 | -- | ||
29 | 0.005 | -- | ||
30 | 0.181 | 0.5 | ||
31 | 0.019 | -- | ||
28 | VGL1828 | 19 | 0.250 | 0.5 |
20 | 0.310 | -- | ||
21 | 0.185 | -- | ||
22 | 0.042 | -- | ||
23 | 0.208 | 0.5 | ||
24 | 0.005 | -- | ||
29 | VGL2009 | 10 | 0.176 | -- |
11 | 0.153 | 0.5 | ||
13 | 0.009 | -- | ||
14 | 0.532 | 0.5 | ||
15 | 0.102 | -- | ||
16 | 0.028 | -- | ||
30 | VGL2409 | 15 | 0.051 | -- |
16 | 0.009 | -- | ||
17 | 0.625 | 1.0 | ||
18 | 0.130 | -- | ||
19 | 0.185 | -- | ||
31 | VGL2918 | 12 | 0.745 | 1.0 |
13 | 0.009 | -- | ||
15 | 0.019 | -- | ||
17.3 | 0.227 | -- | ||
32 | VGL3008 | 15 | 0.356 | 0.5 |
16 | 0.065 | -- | ||
17 | 0.241 | -- | ||
18 | 0.153 | 0.5 | ||
19 | 0.185 | -- | ||
33 | VGL3235 | 13 | 0.093 | -- |
14 | 0.616 | 1.0 | ||
16 | 0.292 | -- |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 109 | 4.394 | 2.429 | 0.528 | 0.524 | -0.004 | |
SE | 0.281 | 0.176 | 0.032 | 0.030 | 0.013 |
Polski Owczarek Nizinny
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 1 | 1.485 | 1.485 | 0.485 | 0.242 | -0.485 | |
SE | 0.087 | 0.087 | 0.087 | 0.043 | 0.087 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 109 | 2.714 | 1.562 | 0.299 | 0.318 | 0.042 | |
SE | 0.171 | 0.130 | 0.067 | 0.072 | 0.012 |
Polski Owczarek Nizinny
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 1 | 1.714 | 1.714 | 0.714 | 0.357 | -0.714 | |
SE | 0.171 | 0.171 | 0.171 | 0.085 | 0.171 |
Standard genetic assessment for individual STR loci
Polish Lowland Sheepdog
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 109 | 4 | 2.411 | 0.606 | 0.585 | -0.035 |
2 | AHT137 | 109 | 4 | 1.769 | 0.339 | 0.435 | 0.219 |
3 | AHTH130 | 109 | 5 | 2.446 | 0.633 | 0.591 | -0.071 |
4 | AHTh171-A | 109 | 6 | 1.500 | 0.266 | 0.333 | 0.201 |
5 | AHTh260 | 109 | 4 | 1.920 | 0.459 | 0.479 | 0.043 |
6 | AHTk211 | 109 | 3 | 1.751 | 0.440 | 0.429 | -0.027 |
7 | AHTk253 | 109 | 4 | 2.371 | 0.578 | 0.578 | 0.001 |
8 | C22.279 | 109 | 3 | 2.582 | 0.624 | 0.613 | -0.018 |
9 | FH2001 | 109 | 2 | 1.066 | 0.064 | 0.062 | -0.033 |
10 | FH2054 | 109 | 7 | 2.075 | 0.523 | 0.518 | -0.009 |
11 | FH2848 | 109 | 5 | 2.890 | 0.651 | 0.654 | 0.004 |
12 | INRA21 | 109 | 2 | 1.179 | 0.165 | 0.152 | -0.090 |
13 | INU005 | 109 | 4 | 1.823 | 0.413 | 0.451 | 0.085 |
14 | INU030 | 109 | 3 | 2.354 | 0.569 | 0.575 | 0.011 |
15 | INU055 | 109 | 3 | 2.745 | 0.725 | 0.636 | -0.140 |
16 | LEI004 | 109 | 2 | 1.311 | 0.239 | 0.237 | -0.005 |
17 | REN105L03 | 109 | 4 | 2.189 | 0.505 | 0.543 | 0.071 |
18 | REN162C04 | 109 | 3 | 1.817 | 0.495 | 0.450 | -0.102 |
19 | REN169D01 | 109 | 4 | 2.060 | 0.541 | 0.515 | -0.052 |
20 | REN169O18 | 109 | 4 | 1.997 | 0.450 | 0.499 | 0.099 |
21 | REN247M23 | 109 | 4 | 1.394 | 0.275 | 0.282 | 0.026 |
22 | REN54P11 | 109 | 5 | 3.842 | 0.780 | 0.740 | -0.054 |
23 | REN64E19 | 109 | 3 | 1.852 | 0.486 | 0.460 | -0.057 |
24 | VGL0760 | 109 | 5 | 2.219 | 0.560 | 0.549 | -0.019 |
25 | VGL0910 | 109 | 8 | 5.611 | 0.853 | 0.822 | -0.038 |
26 | VGL1063 | 109 | 6 | 4.409 | 0.771 | 0.773 | 0.003 |
27 | VGL1165 | 109 | 9 | 3.483 | 0.734 | 0.713 | -0.030 |
28 | VGL1828 | 109 | 6 | 4.201 | 0.780 | 0.762 | -0.023 |
29 | VGL2009 | 109 | 6 | 2.866 | 0.633 | 0.651 | 0.028 |
30 | VGL2409 | 109 | 5 | 2.233 | 0.596 | 0.552 | -0.080 |
31 | VGL2918 | 109 | 4 | 1.639 | 0.376 | 0.390 | 0.036 |
32 | VGL3008 | 109 | 5 | 4.048 | 0.725 | 0.753 | 0.037 |
33 | VGL3235 | 109 | 3 | 2.103 | 0.578 | 0.525 | -0.102 |
Polski Owczarek Nizinny
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
2 | AHT137 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
3 | AHTH130 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
4 | AHTh171-A | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
5 | AHTh260 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
6 | AHTk211 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
7 | AHTk253 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
8 | C22.279 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
9 | FH2001 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
10 | FH2054 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
11 | FH2848 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
12 | INRA21 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
13 | INU005 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
14 | INU030 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
15 | INU055 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
16 | LEI004 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
17 | REN105L03 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
18 | REN162C04 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
19 | REN169D01 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
20 | REN169O18 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
21 | REN247M23 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
22 | REN54P11 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
23 | REN64E19 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
24 | VGL0760 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
25 | VGL0910 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
26 | VGL1063 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
27 | VGL1165 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
28 | VGL1828 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
29 | VGL2009 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
30 | VGL2409 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
31 | VGL2918 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
32 | VGL3008 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
33 | VGL3235 | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
Standard genetic assessment for 7 STRs in the DLA region
Polish Lowland Sheepdog
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 109 | 3 | 1.829 | 0.422 | 0.453 | 0.069 |
2 | DLA I-4ACA | 109 | 2 | 1.752 | 0.404 | 0.429 | 0.060 |
3 | DLA I-4BCT | 109 | 3 | 1.019 | 0.018 | 0.018 | -0.007 |
4 | DLA1131 | 109 | 3 | 1.813 | 0.431 | 0.448 | 0.039 |
5 | 5ACA | 109 | 2 | 1.752 | 0.404 | 0.429 | 0.060 |
6 | 5ACT | 109 | 3 | 1.019 | 0.018 | 0.018 | -0.007 |
7 | 5BCA | 109 | 3 | 1.750 | 0.394 | 0.429 | 0.079 |
Polski Owczarek Nizinny
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
2 | DLA I-4ACA | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
3 | DLA I-4BCT | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
4 | DLA1131 | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
5 | 5ACA | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |
6 | 5ACT | 1 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
7 | 5BCA | 1 | 2 | 2.000 | 1.000 | 0.500 | -1.000 |