Statistics and Breed-wide Allele Frequency - Samoyed

Updated Apr 17, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Samoyed (n=193)
1006	387 375 293 180	0.005
1009	382 377 277 184	0.124
1011	376 365 281 180	0.272
1012	388 369 289 188	0.013
1014	375 373 287 178	0.003
1061	380 365 281 183	0.003
1068	380 373 287 181	0.041
1085	376 373 277 186	0.003
1152	390 373 281 180	0.497
1153	389 373 287 183	0.018
1157	386 373 281 180	0.003
1158	390 371 281 180	0.003
1160	386 369 289 176	0.016

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Samoyed (n=193)
2002	343 327 280	0.003
2003	343 324 282	0.013
2007	351 327 280	0.005
2015	339 327 280	0.016
2022	339 327 282	0.109
2024	343 323 280	0.016
2042	341 324 286	0.003
2050	341 327 284	0.003
2053	343 324 280	0.560
2095	355 322 280	0.161
2096	351 322 280	0.111
2099	345 324 276	0.003

Allele Frequencies

#	Locus Name	Allele	Samoyed (n=196)
1	AHT121	94	0.281
		96	0.023
		100	0.117
		102	0.321
		106	0.041
		108	0.117
		112	0.033
		114	0.003
		116	0.064
2	AHT137	131	0.054
		133	0.184
		145	0.015
		147	0.235
		151	0.258
		153	0.253
		155	0.003
3	AHTH130	119	0.196
		121	0.668
		127	0.013
		129	0.122
4	AHTh171-A	219	0.431
		225	0.064
		227	0.130
		229	0.217
		235	0.158
5	AHTh260	236	0.171
		238	0.005
		242	0.212
		246	0.360
		249	0.005
		250	0.115
		252	0.133
6	AHTk211	89	0.339
		91	0.605
		93	0.056
7	AHTk253	284	0.031
		286	0.117
		288	0.145
		290	0.344
		292	0.360
		294	0.003
8	C22.279	116	0.296
		118	0.122
		120	0.074
		122	0.051
		124	0.390
		126	0.005
		134	0.061
9	FH2001	16	0.003
		132	0.018
		136	0.099
		140	0.026
		144	0.508
		148	0.008
		152	0.087
		156	0.253
10	FH2054	148	0.010
		152	0.003
		156	0.005
		160	0.005
		168	0.625
		172	0.151
		176	0.176
		180	0.026
11	FH2848	232	0.003
		234	0.276
		236	0.217
		237	0.003
		238	0.390
		239	0.003
		240	0.071
		244	0.038
12	INRA21	95	0.941
		97	0.043
		101	0.015
13	INU005	110	0.158
		122	0.431
		124	0.332
		126	0.026
		132	0.054
14	INU030	144	0.184
		146	0.008
		148	0.551
		150	0.258
15	INU055	210	0.005
		212	0.005
		214	0.130
		216	0.176
		218	0.684
16	LEI004	85	0.253
		95	0.745
		107	0.003
17	REN105L03	227	0.102
		229	0.173
		231	0.094
		233	0.028
		234	0.003
		235	0.003
		236	0.003
		239	0.056
		241	0.523
		245	0.015
18	REN162C04	200	0.031
		202	0.181
		204	0.594
		206	0.130
		210	0.064
19	REN169D01	202	0.439
		208	0.038
		212	0.112
		216	0.138
		220	0.056
		222	0.008
		224	0.204
		226	0.005
20	REN169O18	162	0.099
		164	0.214
		166	0.559
		168	0.115
		170	0.013
21	REN247M23	266	0.092
		268	0.357
		270	0.224
		272	0.301
		274	0.005
		276	0.003
		278	0.018
22	REN54P11	226	0.130
		232	0.577
		234	0.270
		236	0.020
		238	0.003
23	REN64E19	139	0.452
		143	0.332
		145	0.110
		147	0.107
24	VGL0760	12	0.120
		13	0.181
		14	0.097
		18.2	0.232
		19.2	0.020
		20.2	0.069
		21.2	0.224
		22.2	0.054
		26.2	0.003
25	VGL0910	17.1	0.232
		18.1	0.069
		19.1	0.020
		20.1	0.056
		21.1	0.324
		22.1	0.179
		23.1	0.056
		24.1	0.064
26	VGL1063	9	0.005
		11	0.005
		12	0.592
		13	0.013
		14	0.066
		17	0.291
		18	0.028
27	VGL1165	14	0.179
		15	0.133
		17	0.003
		19.3	0.143
		20	0.003
		23	0.003
		24	0.217
		26	0.319
		31	0.003
28	VGL1828	14	0.008
		18	0.005
		19	0.798
		20	0.173
		21	0.005
		22	0.008
		23	0.003
29	VGL2009	9	0.191
		11	0.179
		12	0.013
		13	0.202
		14	0.390
		15	0.026
30	VGL2409	13	0.036
		14	0.135
		15	0.258
		16	0.117
		17	0.232
		18	0.219
		21	0.003
31	VGL2918	9	0.003
		12	0.010
		13	0.110
		14	0.587
		15	0.247
		16	0.043
32	VGL3008	10	0.003
		13	0.263
		14	0.184
		15	0.087
		16	0.056
		17	0.209
		18	0.048
		19	0.003
		20	0.008
		21	0.028
		22	0.102
		23	0.010
33	VGL3235	12	0.309
		13	0.349
		14	0.273
		15	0.028
		16	0.033
		17	0.008

Standard genetic assessment based on 33 autosomal STR loci

Samoyed

		N	Na	Ne	Ho	He	F
	Mean	196	6.455	3.259	0.616	0.643	0.041
	SE		0.364	0.208	0.026	0.027	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Samoyed

		N	Na	Ne	Ho	He	F
	Mean	196	6.143	2.093	0.473	0.485	0.022
	SE		0.620	0.207	0.053	0.055	0.009

Standard genetic assessment for individual STR loci

Samoyed

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	196	9	4.609	0.750	0.783	0.042
2	AHT137	196	7	4.503	0.776	0.778	0.003
3	AHTH130	196	4	1.998	0.480	0.500	0.040
4	AHTh171-A	196	5	3.586	0.730	0.721	-0.012
5	AHTh260	196	7	4.269	0.709	0.766	0.074
6	AHTk211	196	3	2.067	0.526	0.516	-0.018
7	AHTk253	196	6	3.523	0.653	0.716	0.088
8	C22.279	196	7	3.749	0.689	0.733	0.061
9	FH2001	196	8	2.942	0.602	0.660	0.088
10	FH2054	196	8	2.247	0.520	0.555	0.062
11	FH2848	196	8	3.548	0.622	0.718	0.133
12	INRA21	196	3	1.126	0.107	0.112	0.042
13	INU005	196	5	3.083	0.617	0.676	0.086
14	INU030	196	4	2.476	0.653	0.596	-0.095
15	INU055	196	5	1.940	0.500	0.485	-0.032
16	LEI004	196	3	1.616	0.388	0.381	-0.017
17	REN105L03	196	10	3.057	0.699	0.673	-0.039
18	REN162C04	196	5	2.451	0.536	0.592	0.095
19	REN169D01	196	8	3.698	0.714	0.730	0.021
20	REN169O18	196	5	2.623	0.566	0.619	0.085
21	REN247M23	196	7	3.606	0.684	0.723	0.054
22	REN54P11	196	5	2.365	0.510	0.577	0.116
23	REN64E19	196	4	2.964	0.679	0.663	-0.024
24	VGL0760	196	9	5.921	0.791	0.831	0.048
25	VGL0910	196	8	4.848	0.770	0.794	0.029
26	VGL1063	196	7	2.271	0.556	0.560	0.006
27	VGL1165	196	9	4.574	0.653	0.781	0.164
28	VGL1828	196	7	1.497	0.281	0.332	0.155
29	VGL2009	196	6	3.813	0.704	0.738	0.046
30	VGL2409	196	7	4.957	0.796	0.798	0.003
31	VGL2918	196	6	2.384	0.602	0.580	-0.037
32	VGL3008	196	12	5.850	0.776	0.829	0.065
33	VGL3235	196	6	3.403	0.684	0.706	0.032

Standard genetic assessment for 7 STRs in the DLA region

Samoyed

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	196	9	2.922	0.641	0.658	0.025
2	DLA I-4ACA	196	6	2.435	0.575	0.589	0.024
3	DLA I-4BCT	196	5	1.611	0.385	0.379	-0.014
4	DLA1131	196	8	1.604	0.378	0.377	-0.002
5	5ACA	196	6	2.453	0.579	0.592	0.022
6	5ACT	196	4	2.329	0.538	0.571	0.057
7	5BCA	196	5	1.293	0.216	0.226	0.044

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Samoyed

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Samoyed

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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