Updated Apr 17, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Samoyed (n=193) |
---|---|---|
1006 | 387 375 293 180 | 0.005 |
1009 | 382 377 277 184 | 0.124 |
1011 | 376 365 281 180 | 0.272 |
1012 | 388 369 289 188 | 0.013 |
1014 | 375 373 287 178 | 0.003 |
1061 | 380 365 281 183 | 0.003 |
1068 | 380 373 287 181 | 0.041 |
1085 | 376 373 277 186 | 0.003 |
1152 | 390 373 281 180 | 0.497 |
1153 | 389 373 287 183 | 0.018 |
1157 | 386 373 281 180 | 0.003 |
1158 | 390 371 281 180 | 0.003 |
1160 | 386 369 289 176 | 0.016 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Samoyed (n=193) |
---|---|---|
2002 | 343 327 280 | 0.003 |
2003 | 343 324 282 | 0.013 |
2007 | 351 327 280 | 0.005 |
2015 | 339 327 280 | 0.016 |
2022 | 339 327 282 | 0.109 |
2024 | 343 323 280 | 0.016 |
2042 | 341 324 286 | 0.003 |
2050 | 341 327 284 | 0.003 |
2053 | 343 324 280 | 0.560 |
2095 | 355 322 280 | 0.161 |
2096 | 351 322 280 | 0.111 |
2099 | 345 324 276 | 0.003 |
Allele Frequencies
# | Locus Name | Allele | Samoyed (n=196) |
---|---|---|---|
1 | AHT121 | 94 | 0.281 |
96 | 0.023 | ||
100 | 0.117 | ||
102 | 0.321 | ||
106 | 0.041 | ||
108 | 0.117 | ||
112 | 0.033 | ||
114 | 0.003 | ||
116 | 0.064 | ||
2 | AHT137 | 131 | 0.054 |
133 | 0.184 | ||
145 | 0.015 | ||
147 | 0.235 | ||
151 | 0.258 | ||
153 | 0.253 | ||
155 | 0.003 | ||
3 | AHTH130 | 119 | 0.196 |
121 | 0.668 | ||
127 | 0.013 | ||
129 | 0.122 | ||
4 | AHTh171-A | 219 | 0.431 |
225 | 0.064 | ||
227 | 0.130 | ||
229 | 0.217 | ||
235 | 0.158 | ||
5 | AHTh260 | 236 | 0.171 |
238 | 0.005 | ||
242 | 0.212 | ||
246 | 0.360 | ||
249 | 0.005 | ||
250 | 0.115 | ||
252 | 0.133 | ||
6 | AHTk211 | 89 | 0.339 |
91 | 0.605 | ||
93 | 0.056 | ||
7 | AHTk253 | 284 | 0.031 |
286 | 0.117 | ||
288 | 0.145 | ||
290 | 0.344 | ||
292 | 0.360 | ||
294 | 0.003 | ||
8 | C22.279 | 116 | 0.296 |
118 | 0.122 | ||
120 | 0.074 | ||
122 | 0.051 | ||
124 | 0.390 | ||
126 | 0.005 | ||
134 | 0.061 | ||
9 | FH2001 | 16 | 0.003 |
132 | 0.018 | ||
136 | 0.099 | ||
140 | 0.026 | ||
144 | 0.508 | ||
148 | 0.008 | ||
152 | 0.087 | ||
156 | 0.253 | ||
10 | FH2054 | 148 | 0.010 |
152 | 0.003 | ||
156 | 0.005 | ||
160 | 0.005 | ||
168 | 0.625 | ||
172 | 0.151 | ||
176 | 0.176 | ||
180 | 0.026 | ||
11 | FH2848 | 232 | 0.003 |
234 | 0.276 | ||
236 | 0.217 | ||
237 | 0.003 | ||
238 | 0.390 | ||
239 | 0.003 | ||
240 | 0.071 | ||
244 | 0.038 | ||
12 | INRA21 | 95 | 0.941 |
97 | 0.043 | ||
101 | 0.015 | ||
13 | INU005 | 110 | 0.158 |
122 | 0.431 | ||
124 | 0.332 | ||
126 | 0.026 | ||
132 | 0.054 | ||
14 | INU030 | 144 | 0.184 |
146 | 0.008 | ||
148 | 0.551 | ||
150 | 0.258 | ||
15 | INU055 | 210 | 0.005 |
212 | 0.005 | ||
214 | 0.130 | ||
216 | 0.176 | ||
218 | 0.684 | ||
16 | LEI004 | 85 | 0.253 |
95 | 0.745 | ||
107 | 0.003 | ||
17 | REN105L03 | 227 | 0.102 |
229 | 0.173 | ||
231 | 0.094 | ||
233 | 0.028 | ||
234 | 0.003 | ||
235 | 0.003 | ||
236 | 0.003 | ||
239 | 0.056 | ||
241 | 0.523 | ||
245 | 0.015 | ||
18 | REN162C04 | 200 | 0.031 |
202 | 0.181 | ||
204 | 0.594 | ||
206 | 0.130 | ||
210 | 0.064 | ||
19 | REN169D01 | 202 | 0.439 |
208 | 0.038 | ||
212 | 0.112 | ||
216 | 0.138 | ||
220 | 0.056 | ||
222 | 0.008 | ||
224 | 0.204 | ||
226 | 0.005 | ||
20 | REN169O18 | 162 | 0.099 |
164 | 0.214 | ||
166 | 0.559 | ||
168 | 0.115 | ||
170 | 0.013 | ||
21 | REN247M23 | 266 | 0.092 |
268 | 0.357 | ||
270 | 0.224 | ||
272 | 0.301 | ||
274 | 0.005 | ||
276 | 0.003 | ||
278 | 0.018 | ||
22 | REN54P11 | 226 | 0.130 |
232 | 0.577 | ||
234 | 0.270 | ||
236 | 0.020 | ||
238 | 0.003 | ||
23 | REN64E19 | 139 | 0.452 |
143 | 0.332 | ||
145 | 0.110 | ||
147 | 0.107 | ||
24 | VGL0760 | 12 | 0.120 |
13 | 0.181 | ||
14 | 0.097 | ||
18.2 | 0.232 | ||
19.2 | 0.020 | ||
20.2 | 0.069 | ||
21.2 | 0.224 | ||
22.2 | 0.054 | ||
26.2 | 0.003 | ||
25 | VGL0910 | 17.1 | 0.232 |
18.1 | 0.069 | ||
19.1 | 0.020 | ||
20.1 | 0.056 | ||
21.1 | 0.324 | ||
22.1 | 0.179 | ||
23.1 | 0.056 | ||
24.1 | 0.064 | ||
26 | VGL1063 | 9 | 0.005 |
11 | 0.005 | ||
12 | 0.592 | ||
13 | 0.013 | ||
14 | 0.066 | ||
17 | 0.291 | ||
18 | 0.028 | ||
27 | VGL1165 | 14 | 0.179 |
15 | 0.133 | ||
17 | 0.003 | ||
19.3 | 0.143 | ||
20 | 0.003 | ||
23 | 0.003 | ||
24 | 0.217 | ||
26 | 0.319 | ||
31 | 0.003 | ||
28 | VGL1828 | 14 | 0.008 |
18 | 0.005 | ||
19 | 0.798 | ||
20 | 0.173 | ||
21 | 0.005 | ||
22 | 0.008 | ||
23 | 0.003 | ||
29 | VGL2009 | 9 | 0.191 |
11 | 0.179 | ||
12 | 0.013 | ||
13 | 0.202 | ||
14 | 0.390 | ||
15 | 0.026 | ||
30 | VGL2409 | 13 | 0.036 |
14 | 0.135 | ||
15 | 0.258 | ||
16 | 0.117 | ||
17 | 0.232 | ||
18 | 0.219 | ||
21 | 0.003 | ||
31 | VGL2918 | 9 | 0.003 |
12 | 0.010 | ||
13 | 0.110 | ||
14 | 0.587 | ||
15 | 0.247 | ||
16 | 0.043 | ||
32 | VGL3008 | 10 | 0.003 |
13 | 0.263 | ||
14 | 0.184 | ||
15 | 0.087 | ||
16 | 0.056 | ||
17 | 0.209 | ||
18 | 0.048 | ||
19 | 0.003 | ||
20 | 0.008 | ||
21 | 0.028 | ||
22 | 0.102 | ||
23 | 0.010 | ||
33 | VGL3235 | 12 | 0.309 |
13 | 0.349 | ||
14 | 0.273 | ||
15 | 0.028 | ||
16 | 0.033 | ||
17 | 0.008 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 196 | 6.455 | 3.259 | 0.616 | 0.643 | 0.041 | |
SE | 0.364 | 0.208 | 0.026 | 0.027 | 0.010 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 196 | 6.143 | 2.093 | 0.473 | 0.485 | 0.022 | |
SE | 0.620 | 0.207 | 0.053 | 0.055 | 0.009 |
Standard genetic assessment for individual STR loci
Samoyed
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 196 | 9 | 4.609 | 0.750 | 0.783 | 0.042 |
2 | AHT137 | 196 | 7 | 4.503 | 0.776 | 0.778 | 0.003 |
3 | AHTH130 | 196 | 4 | 1.998 | 0.480 | 0.500 | 0.040 |
4 | AHTh171-A | 196 | 5 | 3.586 | 0.730 | 0.721 | -0.012 |
5 | AHTh260 | 196 | 7 | 4.269 | 0.709 | 0.766 | 0.074 |
6 | AHTk211 | 196 | 3 | 2.067 | 0.526 | 0.516 | -0.018 |
7 | AHTk253 | 196 | 6 | 3.523 | 0.653 | 0.716 | 0.088 |
8 | C22.279 | 196 | 7 | 3.749 | 0.689 | 0.733 | 0.061 |
9 | FH2001 | 196 | 8 | 2.942 | 0.602 | 0.660 | 0.088 |
10 | FH2054 | 196 | 8 | 2.247 | 0.520 | 0.555 | 0.062 |
11 | FH2848 | 196 | 8 | 3.548 | 0.622 | 0.718 | 0.133 |
12 | INRA21 | 196 | 3 | 1.126 | 0.107 | 0.112 | 0.042 |
13 | INU005 | 196 | 5 | 3.083 | 0.617 | 0.676 | 0.086 |
14 | INU030 | 196 | 4 | 2.476 | 0.653 | 0.596 | -0.095 |
15 | INU055 | 196 | 5 | 1.940 | 0.500 | 0.485 | -0.032 |
16 | LEI004 | 196 | 3 | 1.616 | 0.388 | 0.381 | -0.017 |
17 | REN105L03 | 196 | 10 | 3.057 | 0.699 | 0.673 | -0.039 |
18 | REN162C04 | 196 | 5 | 2.451 | 0.536 | 0.592 | 0.095 |
19 | REN169D01 | 196 | 8 | 3.698 | 0.714 | 0.730 | 0.021 |
20 | REN169O18 | 196 | 5 | 2.623 | 0.566 | 0.619 | 0.085 |
21 | REN247M23 | 196 | 7 | 3.606 | 0.684 | 0.723 | 0.054 |
22 | REN54P11 | 196 | 5 | 2.365 | 0.510 | 0.577 | 0.116 |
23 | REN64E19 | 196 | 4 | 2.964 | 0.679 | 0.663 | -0.024 |
24 | VGL0760 | 196 | 9 | 5.921 | 0.791 | 0.831 | 0.048 |
25 | VGL0910 | 196 | 8 | 4.848 | 0.770 | 0.794 | 0.029 |
26 | VGL1063 | 196 | 7 | 2.271 | 0.556 | 0.560 | 0.006 |
27 | VGL1165 | 196 | 9 | 4.574 | 0.653 | 0.781 | 0.164 |
28 | VGL1828 | 196 | 7 | 1.497 | 0.281 | 0.332 | 0.155 |
29 | VGL2009 | 196 | 6 | 3.813 | 0.704 | 0.738 | 0.046 |
30 | VGL2409 | 196 | 7 | 4.957 | 0.796 | 0.798 | 0.003 |
31 | VGL2918 | 196 | 6 | 2.384 | 0.602 | 0.580 | -0.037 |
32 | VGL3008 | 196 | 12 | 5.850 | 0.776 | 0.829 | 0.065 |
33 | VGL3235 | 196 | 6 | 3.403 | 0.684 | 0.706 | 0.032 |
Standard genetic assessment for 7 STRs in the DLA region
Samoyed
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 196 | 9 | 2.922 | 0.641 | 0.658 | 0.025 |
2 | DLA I-4ACA | 196 | 6 | 2.435 | 0.575 | 0.589 | 0.024 |
3 | DLA I-4BCT | 196 | 5 | 1.611 | 0.385 | 0.379 | -0.014 |
4 | DLA1131 | 196 | 8 | 1.604 | 0.378 | 0.377 | -0.002 |
5 | 5ACA | 196 | 6 | 2.453 | 0.579 | 0.592 | 0.022 |
6 | 5ACT | 196 | 4 | 2.329 | 0.538 | 0.571 | 0.057 |
7 | 5BCA | 196 | 5 | 1.293 | 0.216 | 0.226 | 0.044 |