Updated Mar 28, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Swedish Vallhund (n=553) |
---|---|---|
1006 | 387 375 293 180 | 0.2360 |
1009 | 382 377 277 184 | 0.0561 |
1068 | 380 373 287 181 | 0.3562 |
1177 | 395 373 277 181 | 0.1736 |
1178 | 386 365 277 186 | 0.1609 |
1179 | 395 375 293 180 | 0.0027 |
1259 | 387 373 287 181 | 0.0145 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Swedish Vallhund (n=553) |
---|---|---|
2007 | 351 327 280 | 0.2387 |
2022 | 339 327 282 | 0.0561 |
2053 | 343 324 280 | 0.5316 |
2066 | 339 324 280 | 0.0009 |
2084 | 339 323 268 | 0.1727 |
Allele Frequencies
# | Locus Name | Allele | Swedish Vallhund (n=554) |
---|---|---|---|
1 | AHT121 | 94 | 0.1236 |
96 | 0.3014 | ||
98 | 0.0713 | ||
100 | 0.4296 | ||
102 | 0.0695 | ||
106 | 0.0045 | ||
2 | AHT137 | 131 | 0.3267 |
133 | 0.0208 | ||
135 | 0.1236 | ||
137 | 0.5244 | ||
139 | 0.0018 | ||
147 | 0.0027 | ||
3 | AHTH130 | 119 | 0.1300 |
121 | 0.0857 | ||
127 | 0.0623 | ||
129 | 0.0135 | ||
131 | 0.0009 | ||
133 | 0.0018 | ||
135 | 0.7058 | ||
4 | AHTh171-A | 221 | 0.6570 |
225 | 0.1525 | ||
227 | 0.0289 | ||
229 | 0.0578 | ||
233 | 0.1038 | ||
5 | AHTh260 | 246 | 0.5334 |
248 | 0.3051 | ||
250 | 0.0036 | ||
254 | 0.1579 | ||
6 | AHTk211 | 87 | 0.4188 |
89 | 0.1300 | ||
91 | 0.4513 | ||
7 | AHTk253 | 282 | 0.1958 |
286 | 0.0650 | ||
288 | 0.3610 | ||
290 | 0.0993 | ||
292 | 0.1877 | ||
294 | 0.0912 | ||
8 | C22.279 | 116 | 0.3150 |
118 | 0.0018 | ||
124 | 0.6291 | ||
130 | 0.0542 | ||
9 | FH2001 | 132 | 0.2428 |
140 | 0.0063 | ||
144 | 0.6137 | ||
148 | 0.0731 | ||
152 | 0.0641 | ||
10 | FH2054 | 148 | 0.1363 |
152 | 0.1300 | ||
156 | 0.6363 | ||
160 | 0.0442 | ||
164 | 0.0036 | ||
172 | 0.0487 | ||
176 | 0.0009 | ||
11 | FH2848 | 232 | 0.1588 |
236 | 0.0352 | ||
238 | 0.1110 | ||
240 | 0.6805 | ||
244 | 0.0144 | ||
12 | INRA21 | 95 | 0.0379 |
97 | 0.2383 | ||
99 | 0.0560 | ||
101 | 0.6679 | ||
13 | INU005 | 122 | 0.0478 |
124 | 0.8989 | ||
126 | 0.0532 | ||
14 | INU030 | 144 | 0.2067 |
148 | 0.0451 | ||
150 | 0.6958 | ||
152 | 0.0523 | ||
15 | INU055 | 210 | 0.2780 |
212 | 0.0966 | ||
214 | 0.3511 | ||
216 | 0.2744 | ||
16 | LEI004 | 85 | 0.1354 |
95 | 0.5316 | ||
97 | 0.0578 | ||
105 | 0.1525 | ||
107 | 0.1227 | ||
17 | REN105L03 | 231 | 0.1282 |
233 | 0.1995 | ||
235 | 0.1670 | ||
239 | 0.0966 | ||
241 | 0.4088 | ||
18 | REN162C04 | 200 | 0.2356 |
202 | 0.2789 | ||
204 | 0.2103 | ||
206 | 0.2717 | ||
210 | 0.0036 | ||
19 | REN169D01 | 202 | 0.2527 |
210 | 0.1029 | ||
216 | 0.1534 | ||
218 | 0.4910 | ||
20 | REN169O18 | 162 | 0.6489 |
170 | 0.3466 | ||
174 | 0.0045 | ||
21 | REN247M23 | 268 | 0.8664 |
272 | 0.1336 | ||
22 | REN54P11 | 226 | 0.8953 |
234 | 0.0875 | ||
244 | 0.0171 | ||
23 | REN64E19 | 145 | 0.0776 |
147 | 0.4468 | ||
149 | 0.4738 | ||
153 | 0.0018 | ||
24 | VGL0760 | 12 | 0.0731 |
14 | 0.1038 | ||
15 | 0.0036 | ||
20.2 | 0.2960 | ||
21.2 | 0.2960 | ||
22.2 | 0.0072 | ||
23.2 | 0.0514 | ||
24.2 | 0.1688 | ||
25 | VGL0910 | 18.1 | 0.0018 |
19.1 | 0.1399 | ||
20.1 | 0.4549 | ||
21.1 | 0.3484 | ||
22.1 | 0.0532 | ||
23.1 | 0.0018 | ||
26 | VGL1063 | 8 | 0.0199 |
12 | 0.1209 | ||
13 | 0.1724 | ||
14 | 0.0912 | ||
15 | 0.4567 | ||
16 | 0.0099 | ||
19 | 0.0307 | ||
20 | 0.0731 | ||
21 | 0.0253 | ||
27 | VGL1165 | 18 | 0.0153 |
20 | 0.4395 | ||
22 | 0.0009 | ||
23 | 0.2735 | ||
24 | 0.0280 | ||
25 | 0.1498 | ||
26 | 0.0930 | ||
28 | VGL1828 | 15 | 0.0009 |
16 | 0.0487 | ||
17 | 0.2374 | ||
18 | 0.0009 | ||
19 | 0.6101 | ||
20 | 0.1020 | ||
29 | VGL2009 | 13 | 0.1218 |
14 | 0.0181 | ||
15 | 0.6606 | ||
16 | 0.1949 | ||
17 | 0.0045 | ||
30 | VGL2409 | 14 | 0.2527 |
15 | 0.0018 | ||
16 | 0.4449 | ||
17 | 0.2978 | ||
18 | 0.0018 | ||
19 | 0.0009 | ||
31 | VGL2918 | 13 | 0.2058 |
14 | 0.6715 | ||
15 | 0.0397 | ||
17.3 | 0.0009 | ||
18.3 | 0.0433 | ||
19.3 | 0.0361 | ||
20.3 | 0.0027 | ||
32 | VGL3008 | 16 | 0.2509 |
17 | 0.4919 | ||
18 | 0.1841 | ||
19 | 0.0126 | ||
20 | 0.0605 | ||
33 | VGL3235 | 14 | 0.5993 |
15 | 0.0857 | ||
16 | 0.0081 | ||
17 | 0.0126 | ||
18 | 0.2942 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 554 | 5.091 | 2.590 | 0.565 | 0.569 | 0.010 | |
SE | 0.269 | 0.147 | 0.026 | 0.026 | 0.007 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 554 | 3.571 | 2.679 | 0.623 | 0.603 | -0.034 | |
SE | 0.275 | 0.249 | 0.042 | 0.040 | 0.009 |
Standard genetic assessment for individual STR loci
Swedish Vallhund
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 554 | 6 | 3.326 | 0.666 | 0.699 | 0.048 |
2 | AHT137 | 554 | 6 | 2.516 | 0.561 | 0.603 | 0.068 |
3 | AHTH130 | 554 | 7 | 1.900 | 0.504 | 0.474 | -0.063 |
4 | AHTh171-A | 554 | 5 | 2.128 | 0.536 | 0.530 | -0.011 |
5 | AHTh260 | 554 | 4 | 2.484 | 0.599 | 0.597 | -0.003 |
6 | AHTk211 | 554 | 3 | 2.526 | 0.614 | 0.604 | -0.016 |
7 | AHTk253 | 554 | 6 | 4.419 | 0.798 | 0.774 | -0.031 |
8 | C22.279 | 554 | 4 | 2.009 | 0.477 | 0.502 | 0.051 |
9 | FH2001 | 554 | 5 | 2.247 | 0.543 | 0.555 | 0.021 |
10 | FH2054 | 554 | 7 | 2.249 | 0.597 | 0.555 | -0.076 |
11 | FH2848 | 554 | 5 | 1.992 | 0.496 | 0.498 | 0.003 |
12 | INRA21 | 554 | 4 | 1.971 | 0.495 | 0.493 | -0.004 |
13 | INU005 | 554 | 3 | 1.230 | 0.173 | 0.187 | 0.072 |
14 | INU030 | 554 | 4 | 1.881 | 0.475 | 0.468 | -0.014 |
15 | INU055 | 554 | 4 | 3.507 | 0.695 | 0.715 | 0.028 |
16 | LEI004 | 554 | 5 | 2.919 | 0.621 | 0.657 | 0.055 |
17 | REN105L03 | 554 | 5 | 3.838 | 0.769 | 0.739 | -0.040 |
18 | REN162C04 | 554 | 5 | 3.979 | 0.717 | 0.749 | 0.043 |
19 | REN169D01 | 554 | 4 | 2.949 | 0.635 | 0.661 | 0.039 |
20 | REN169O18 | 554 | 3 | 1.848 | 0.440 | 0.459 | 0.040 |
21 | REN247M23 | 554 | 2 | 1.301 | 0.231 | 0.231 | 0.002 |
22 | REN54P11 | 554 | 3 | 1.235 | 0.184 | 0.190 | 0.033 |
23 | REN64E19 | 554 | 4 | 2.325 | 0.590 | 0.570 | -0.036 |
24 | VGL0760 | 554 | 8 | 4.493 | 0.771 | 0.777 | 0.009 |
25 | VGL0910 | 554 | 6 | 2.852 | 0.625 | 0.649 | 0.038 |
26 | VGL1063 | 554 | 9 | 3.723 | 0.738 | 0.731 | -0.009 |
27 | VGL1165 | 554 | 7 | 3.332 | 0.722 | 0.700 | -0.032 |
28 | VGL1828 | 554 | 6 | 2.266 | 0.547 | 0.559 | 0.021 |
29 | VGL2009 | 554 | 5 | 2.042 | 0.523 | 0.510 | -0.026 |
30 | VGL2409 | 554 | 6 | 2.853 | 0.637 | 0.649 | 0.019 |
31 | VGL2918 | 554 | 7 | 2.008 | 0.496 | 0.502 | 0.011 |
32 | VGL3008 | 554 | 5 | 2.919 | 0.666 | 0.657 | -0.013 |
33 | VGL3235 | 554 | 5 | 2.206 | 0.495 | 0.547 | 0.095 |
Standard genetic assessment for 7 STRs in the DLA region
Swedish Vallhund
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 554 | 5 | 4.003 | 0.787 | 0.750 | -0.049 |
2 | DLA I-4ACA | 554 | 4 | 2.612 | 0.619 | 0.617 | -0.003 |
3 | DLA I-4BCT | 554 | 3 | 2.881 | 0.699 | 0.653 | -0.070 |
4 | DLA1131 | 554 | 4 | 2.612 | 0.619 | 0.617 | -0.003 |
5 | 5ACA | 554 | 3 | 2.549 | 0.626 | 0.608 | -0.031 |
6 | 5ACT | 554 | 3 | 2.499 | 0.617 | 0.600 | -0.029 |
7 | 5BCA | 554 | 3 | 1.594 | 0.392 | 0.373 | -0.051 |