Statistics and Breed-wide Allele Frequency - German Pinscher

Updated Nov 21, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Pinscher (n=97)
1030	380 373 293 178	0.082
1036	389 365 289 180	0.531
1052	380 372 289 184	0.057
1062	382 371 277 183	0.129
1073	388 369 289 186	0.005
1094	395 375 277 176	0.010
1293	386 373 291 182	0.186

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Pinscher (n=97)
2021	339 324 268	0.129
2023	341 323 282	0.026
2041	349 321 280	0.531
2054	343 322 268	0.005
2067	343 322 284	0.242
2089	343 331 276	0.010
2100	341 324 282	0.057

Allele Frequencies

#	Locus Name	Allele	German Pinscher (n=97)
1	AHT121	92	0.206
		94	0.021
		96	0.144
		98	0.015
		102	0.026
		104	0.165
		106	0.418
		110	0.005
2	AHT137	131	0.670
		137	0.103
		147	0.216
		149	0.005
		151	0.005
3	AHTH130	121	0.479
		127	0.103
		129	0.418
4	AHTh171-A	219	0.284
		225	0.036
		227	0.521
		233	0.119
		237	0.041
5	AHTh260	238	0.227
		246	0.031
		250	0.716
		252	0.026
6	AHTk211	87	0.119
		89	0.144
		91	0.732
		95	0.005
7	AHTk253	286	0.015
		288	0.216
		290	0.418
		292	0.351
8	C22.279	116	0.258
		118	0.381
		120	0.021
		124	0.340
9	FH2001	132	0.314
		144	0.371
		148	0.077
		152	0.237
10	FH2054	148	0.082
		152	0.428
		156	0.351
		160	0.026
		168	0.113
11	FH2848	232	0.222
		236	0.052
		238	0.062
		240	0.649
		244	0.015
12	INRA21	99	0.500
12	INRA21	101	0.500
13	INU005	110	0.052
		122	0.005
		124	0.804
		132	0.139
14	INU030	144	0.170
		148	0.170
		150	0.206
		152	0.454
15	INU055	210	0.335
		212	0.268
		214	0.015
		218	0.381
16	LEI004	85	0.237
		95	0.098
		97	0.665
17	REN105L03	227	0.005
		231	0.165
		233	0.134
		235	0.531
		239	0.119
		241	0.046
18	REN162C04	202	0.088
		204	0.289
		206	0.588
		208	0.005
		210	0.031
19	REN169D01	212	0.041
		216	0.175
		220	0.784
20	REN169O18	162	0.036
		164	0.443
		168	0.077
		170	0.443
21	REN247M23	268	0.686
		270	0.015
		272	0.299
22	REN54P11	222	0.376
		226	0.258
		232	0.278
		234	0.088
23	REN64E19	139	0.263
		145	0.237
		147	0.495
		153	0.005
24	VGL0760	12	0.077
		21.2	0.082
		22.2	0.454
		23.2	0.381
		24.2	0.005
25	VGL0910	17.1	0.093
		18.1	0.216
		19.1	0.134
		20.1	0.165
		21.1	0.088
		22.1	0.021
		23.1	0.010
		24.1	0.170
		25.1	0.103
26	VGL1063	8	0.320
		13	0.021
		14	0.428
		15	0.021
		17	0.211
27	VGL1165	15	0.046
		20	0.036
		23	0.036
		24	0.273
		26	0.036
		27	0.433
		28	0.052
		30	0.088
28	VGL1828	15	0.284
		16	0.031
		17	0.093
		18	0.005
		19	0.098
		20	0.021
		21	0.067
		22	0.289
		23	0.113
29	VGL2009	11	0.026
		13	0.108
		14	0.015
		15	0.448
		16	0.387
		17	0.015
30	VGL2409	14	0.067
		15	0.500
		16	0.371
		18	0.062
31	VGL2918	12	0.010
		13	0.737
		14	0.139
		15	0.108
		16	0.005
32	VGL3008	13	0.593
		14	0.010
		15	0.144
		17	0.021
		18	0.144
		19	0.036
		20	0.036
		21	0.010
		22	0.005
33	VGL3235	13	0.170
		14	0.005
		15	0.144
		16	0.655
		18	0.026

Standard genetic assessment based on 33 autosomal STR loci

German Pinscher

		N	Na	Ne	Ho	He	F
	Mean	97	4.909	2.741	0.597	0.595	-0.000
	SE		0.310	0.177	0.024	0.021	0.012

Standard genetic assessment based on 7 STRs in the DLA region

German Pinscher

		N	Na	Ne	Ho	He	F
	Mean	97	5.286	2.704	0.651	0.629	-0.035
	SE		0.389	0.054	0.006	0.008	0.006

Standard genetic assessment for individual STR loci

German Pinscher

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	97	8	3.756	0.670	0.734	0.087
2	AHT137	97	5	1.974	0.536	0.493	-0.086
3	AHTH130	97	3	2.411	0.567	0.585	0.031
4	AHTh171-A	97	5	2.714	0.567	0.632	0.102
5	AHTh260	97	4	1.765	0.381	0.434	0.120
6	AHTk211	97	4	1.752	0.433	0.429	-0.009
7	AHTk253	97	4	2.904	0.577	0.656	0.120
8	C22.279	97	4	3.048	0.660	0.672	0.018
9	FH2001	97	4	3.347	0.691	0.701	0.015
10	FH2054	97	5	3.065	0.649	0.674	0.036
11	FH2848	97	5	2.093	0.495	0.522	0.053
12	INRA21	97	2	2.000	0.485	0.500	0.031
13	INU005	97	4	1.496	0.351	0.331	-0.058
14	INU030	97	4	3.266	0.742	0.694	-0.070
15	INU055	97	4	3.032	0.722	0.670	-0.077
16	LEI004	97	3	1.969	0.495	0.492	-0.006
17	REN105L03	97	6	2.913	0.670	0.657	-0.020
18	REN162C04	97	5	2.287	0.557	0.563	0.011
19	REN169D01	97	3	1.547	0.340	0.354	0.038
20	REN169O18	97	4	2.498	0.619	0.600	-0.031
21	REN247M23	97	3	1.787	0.412	0.440	0.064
22	REN54P11	97	4	3.411	0.742	0.707	-0.050
23	REN64E19	97	4	2.701	0.660	0.630	-0.048
24	VGL0760	97	5	2.747	0.722	0.636	-0.135
25	VGL0910	97	9	6.738	0.866	0.852	-0.017
26	VGL1063	97	5	3.024	0.742	0.669	-0.109
27	VGL1165	97	8	3.591	0.711	0.721	0.014
28	VGL1828	97	9	4.984	0.845	0.799	-0.058
29	VGL2009	97	6	2.752	0.639	0.637	-0.004
30	VGL2409	97	4	2.525	0.649	0.604	-0.075
31	VGL2918	97	5	1.740	0.402	0.425	0.055
32	VGL3008	97	9	2.523	0.660	0.604	-0.093
33	VGL3235	97	5	2.088	0.443	0.521	0.149

Standard genetic assessment for 7 STRs in the DLA region

German Pinscher

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	97	6	2.837	0.670	0.648	-0.035
2	DLA I-4ACA	97	6	2.676	0.639	0.626	-0.021
3	DLA I-4BCT	97	4	2.427	0.629	0.588	-0.069
4	DLA1131	97	7	2.915	0.680	0.657	-0.036
5	5ACA	97	4	2.690	0.639	0.628	-0.017
6	5ACT	97	5	2.643	0.649	0.622	-0.045
7	5BCA	97	5	2.736	0.649	0.635	-0.024

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Pinscher

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Pinscher

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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