Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Sep 23, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=80)
1006	387 375 293 180	0.038
1045	376 371 277 186	0.031
1052	380 372 289 184	0.531
1054	382 379 277 184	0.044
1066	376 375 277 178	0.013
1068	380 373 287 181	0.244
1091	381 371 277 181	0.006
1165	392 369 281 182	0.006
1166	388 379 277 184	0.081
1297	388 379 287 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=80)
2002	343 327 280	0.006
2003	343 324 282	0.006
2007	351 327 280	0.038
2017	343 322 280	0.488
2022	339 327 282	0.125
2039	345 327 276	0.031
2047	339 331 280	0.013
2053	343 324 280	0.244
2067	343 322 284	0.038
2080	339 325 276	0.013

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=80)
1	AHT121	80	0.019
		88	0.006
		94	0.044
		100	0.188
		102	0.631
		104	0.069
		106	0.013
		108	0.019
		112	0.013
2	AHT137	131	0.406
		133	0.069
		135	0.006
		137	0.475
		141	0.006
		147	0.006
		151	0.019
		155	0.013
3	AHTH130	123	0.100
		125	0.038
		127	0.388
		129	0.056
		131	0.419
4	AHTh171-A	219	0.088
		223	0.513
		225	0.038
		233	0.363
5	AHTh260	238	0.338
		242	0.238
		244	0.013
		246	0.169
		248	0.025
		252	0.213
		254	0.006
6	AHTk211	87	0.200
		89	0.363
		91	0.094
		95	0.344
7	AHTk253	280	0.006
		286	0.075
		288	0.731
		290	0.063
		292	0.013
		294	0.113
8	C22.279	116	0.456
		118	0.156
		120	0.006
		122	0.006
		124	0.019
		126	0.356
9	FH2001	132	0.369
		140	0.006
		144	0.331
		148	0.275
		152	0.019
10	FH2054	152	0.456
		156	0.050
		160	0.063
		164	0.169
		168	0.244
		172	0.019
11	FH2848	232	0.031
		236	0.025
		238	0.031
		240	0.419
		242	0.475
		244	0.019
12	INRA21	91	0.056
		95	0.575
		97	0.069
		99	0.150
		101	0.150
13	INU005	110	0.188
		124	0.281
		126	0.506
		128	0.019
		130	0.006
14	INU030	144	0.013
		146	0.381
		150	0.538
		152	0.069
15	INU055	210	0.256
		214	0.081
		218	0.438
		220	0.225
16	LEI004	85	0.450
		95	0.500
		103	0.013
		107	0.038
17	REN105L03	227	0.338
		229	0.006
		231	0.231
		233	0.075
		235	0.138
		241	0.213
18	REN162C04	200	0.113
		204	0.069
		206	0.406
		208	0.031
		212	0.381
19	REN169D01	212	0.413
		216	0.550
		218	0.006
		220	0.031
20	REN169O18	158	0.063
		162	0.288
		164	0.131
		166	0.131
		168	0.338
		172	0.006
		174	0.031
		178	0.013
21	REN247M23	268	0.138
		270	0.769
		272	0.013
		276	0.006
		278	0.075
22	REN54P11	226	0.419
		232	0.069
		234	0.431
		236	0.025
		238	0.056
23	REN64E19	139	0.013
		143	0.031
		145	0.019
		147	0.050
		153	0.225
		155	0.663
24	VGL0760	12	0.144
		13	0.306
		14	0.013
		18.2	0.063
		19.2	0.013
		20	0.006
		20.2	0.106
		21.2	0.256
		22.2	0.075
		23.2	0.019
25	VGL0910	16.1	0.006
		17.1	0.244
		18.1	0.081
		19.1	0.363
		20.1	0.138
		21.1	0.138
		22.1	0.031
26	VGL1063	8	0.006
		9	0.044
		10	0.144
		11	0.063
		12	0.338
		13	0.325
		14	0.063
		18	0.006
		19	0.006
		20	0.006
27	VGL1165	14	0.013
		15	0.194
		16	0.069
		17	0.206
		18	0.013
		21	0.006
		22	0.038
		23	0.025
		25	0.044
		26	0.256
		27	0.081
		28	0.056
28	VGL1828	15	0.044
		16	0.056
		17	0.038
		18	0.006
		19	0.831
		20	0.006
		22	0.019
29	VGL2009	9	0.025
		11	0.269
		13	0.206
		14	0.219
		15	0.275
		16	0.006
30	VGL2409	15	0.375
		16	0.275
		17	0.131
		18	0.163
		19	0.056
31	VGL2918	12	0.013
		13	0.106
		14	0.181
		15	0.181
		16.3	0.006
		18.3	0.038
		19.3	0.056
		20.3	0.038
		21.3	0.294
		22.3	0.088
32	VGL3008	10	0.038
		13	0.013
		15	0.588
		16	0.019
		17	0.044
		18	0.175
		19	0.094
		20	0.025
		21	0.006
33	VGL3235	13	0.019
		14	0.394
		15	0.375
		16	0.163
		17	0.006
		18	0.006
		19	0.038

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	80	6.364	3.152	0.622	0.645	0.038
	SE		0.361	0.190	0.022	0.021	0.012

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	80	5.286	2.117	0.482	0.499	0.040
	SE		0.389	0.193	0.048	0.045	0.014

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	80	9	2.266	0.525	0.559	0.060
2	AHT137	80	8	2.525	0.613	0.604	-0.014
3	AHTH130	80	5	2.941	0.688	0.660	-0.042
4	AHTh171-A	80	4	2.481	0.538	0.597	0.099
5	AHTh260	80	7	4.086	0.688	0.755	0.090
6	AHTk211	80	4	3.352	0.663	0.702	0.056
7	AHTk253	80	6	1.795	0.438	0.443	0.012
8	C22.279	80	6	2.778	0.563	0.640	0.121
9	FH2001	80	5	3.108	0.663	0.678	0.023
10	FH2054	80	6	3.302	0.725	0.697	-0.040
11	FH2848	80	6	2.476	0.688	0.596	-0.153
12	INRA21	80	5	2.607	0.613	0.616	0.006
13	INU005	80	5	2.696	0.625	0.629	0.006
14	INU030	80	4	2.277	0.500	0.561	0.109
15	INU055	80	4	3.182	0.650	0.686	0.052
16	LEI004	80	4	2.202	0.513	0.546	0.061
17	REN105L03	80	6	4.217	0.700	0.763	0.082
18	REN162C04	80	5	3.042	0.638	0.671	0.050
19	REN169D01	80	4	2.111	0.450	0.526	0.145
20	REN169O18	80	8	4.236	0.775	0.764	-0.015
21	REN247M23	80	5	1.624	0.288	0.384	0.252
22	REN54P11	80	5	2.704	0.650	0.630	-0.031
23	REN64E19	80	6	2.026	0.463	0.506	0.087
24	VGL0760	80	10	4.959	0.763	0.798	0.045
25	VGL0910	80	7	4.233	0.738	0.764	0.034
26	VGL1063	80	10	3.999	0.750	0.750	-0.000
27	VGL1165	80	12	6.078	0.850	0.835	-0.017
28	VGL1828	80	7	1.433	0.325	0.302	-0.076
29	VGL2009	80	6	4.186	0.713	0.761	0.064
30	VGL2409	80	5	3.802	0.688	0.737	0.067
31	VGL2918	80	10	5.646	0.813	0.823	0.013
32	VGL3008	80	9	2.570	0.588	0.611	0.038
33	VGL3235	80	7	3.087	0.638	0.676	0.057

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	80	7	1.630	0.375	0.386	0.030
2	DLA I-4ACA	80	6	2.756	0.625	0.637	0.019
3	DLA I-4BCT	80	5	2.654	0.613	0.623	0.017
4	DLA1131	80	6	2.004	0.488	0.501	0.027
5	5ACA	80	4	1.574	0.350	0.365	0.040
6	5ACT	80	5	2.642	0.613	0.622	0.015
7	5BCA	80	4	1.561	0.313	0.359	0.130

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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