Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Sep 5, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=61)
1006	387 375 293 180	0.041
1045	376 371 277 186	0.025
1052	380 372 289 184	0.525
1054	382 379 277 184	0.049
1068	380 373 287 181	0.254
1091	381 371 277 181	0.008
1165	392 369 281 182	0.008
1166	388 379 277 184	0.082
1297	388 379 287 181	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=61)
2002	343 327 280	0.008
2003	343 324 282	0.008
2007	351 327 280	0.041
2017	343 322 280	0.475
2022	339 327 282	0.131
2039	345 327 276	0.025
2053	343 324 280	0.254
2067	343 322 284	0.041
2080	339 325 276	0.016

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=61)
1	AHT121	80	0.025
		88	0.008
		94	0.049
		100	0.189
		102	0.607
		104	0.082
		106	0.008
		108	0.016
		112	0.016
2	AHT137	131	0.410
		133	0.041
		135	0.008
		137	0.484
		141	0.008
		147	0.008
		151	0.025
		155	0.016
3	AHTH130	123	0.090
		125	0.049
		127	0.377
		129	0.049
		131	0.434
4	AHTh171-A	219	0.082
		223	0.451
		225	0.049
		233	0.418
5	AHTh260	238	0.369
		242	0.262
		244	0.016
		246	0.180
		248	0.025
		252	0.139
		254	0.008
6	AHTk211	87	0.221
		89	0.361
		91	0.098
		95	0.320
7	AHTk253	280	0.008
		286	0.066
		288	0.738
		290	0.066
		292	0.016
		294	0.107
8	C22.279	116	0.451
		118	0.139
		120	0.008
		122	0.008
		124	0.025
		126	0.369
9	FH2001	132	0.303
		140	0.008
		144	0.352
		148	0.311
		152	0.025
10	FH2054	152	0.426
		156	0.066
		160	0.057
		164	0.148
		168	0.279
		172	0.025
11	FH2848	232	0.033
		236	0.025
		238	0.041
		240	0.426
		242	0.451
		244	0.025
12	INRA21	91	0.057
		95	0.598
		97	0.057
		99	0.172
		101	0.115
13	INU005	110	0.197
		124	0.295
		126	0.475
		128	0.025
		130	0.008
14	INU030	144	0.016
		146	0.385
		150	0.533
		152	0.066
15	INU055	210	0.279
		214	0.066
		218	0.410
		220	0.246
16	LEI004	85	0.500
		95	0.451
		103	0.016
		107	0.033
17	REN105L03	227	0.393
		229	0.008
		231	0.189
		233	0.066
		235	0.148
		241	0.197
18	REN162C04	200	0.082
		204	0.074
		206	0.443
		208	0.033
		212	0.369
19	REN169D01	212	0.410
		216	0.541
		218	0.008
		220	0.041
20	REN169O18	158	0.057
		162	0.254
		164	0.156
		166	0.156
		168	0.344
		172	0.008
		174	0.008
		178	0.016
21	REN247M23	268	0.164
		270	0.746
		272	0.008
		278	0.082
22	REN54P11	226	0.467
		232	0.057
		234	0.410
		236	0.008
		238	0.057
23	REN64E19	139	0.016
		143	0.033
		145	0.016
		147	0.066
		153	0.197
		155	0.672
24	VGL0760	12	0.156
		13	0.320
		14	0.008
		18.2	0.074
		19.2	0.016
		20	0.008
		20.2	0.090
		21.2	0.221
		22.2	0.098
		23.2	0.008
25	VGL0910	16.1	0.008
		17.1	0.246
		18.1	0.066
		19.1	0.344
		20.1	0.156
		21.1	0.139
		22.1	0.041
26	VGL1063	8	0.008
		9	0.041
		10	0.131
		11	0.041
		12	0.369
		13	0.320
		14	0.066
		18	0.008
		19	0.008
		20	0.008
27	VGL1165	14	0.016
		15	0.172
		16	0.074
		17	0.246
		18	0.008
		21	0.008
		22	0.049
		23	0.008
		25	0.033
		26	0.221
		27	0.098
		28	0.066
28	VGL1828	15	0.041
		16	0.041
		17	0.033
		19	0.852
		20	0.008
		22	0.025
29	VGL2009	9	0.025
		11	0.303
		13	0.205
		14	0.164
		15	0.295
		16	0.008
30	VGL2409	15	0.352
		16	0.230
		17	0.148
		18	0.197
		19	0.074
31	VGL2918	12	0.016
		13	0.107
		14	0.164
		15	0.180
		16.3	0.008
		18.3	0.049
		19.3	0.057
		20.3	0.049
		21.3	0.295
		22.3	0.074
32	VGL3008	10	0.041
		13	0.008
		15	0.607
		16	0.025
		17	0.033
		18	0.180
		19	0.082
		20	0.016
		21	0.008
33	VGL3235	13	0.025
		14	0.426
		15	0.402
		16	0.123
		17	0.008
		19	0.016

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	61	6.273	3.147	0.629	0.643	0.023
	SE		0.364	0.193	0.024	0.021	0.015

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	61	5.000	2.119	0.515	0.499	-0.026
	SE		0.404	0.196	0.053	0.046	0.017

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	61	9	2.416	0.574	0.586	0.021
2	AHT137	61	8	2.472	0.623	0.595	-0.046
3	AHTH130	61	5	2.908	0.705	0.656	-0.074
4	AHTh171-A	61	4	2.583	0.557	0.613	0.091
5	AHTh260	61	7	3.880	0.721	0.742	0.028
6	AHTk211	61	4	3.437	0.689	0.709	0.029
7	AHTk253	61	6	1.771	0.426	0.436	0.021
8	C22.279	61	6	2.782	0.541	0.641	0.155
9	FH2001	61	5	3.186	0.705	0.686	-0.027
10	FH2054	61	6	3.457	0.770	0.711	-0.084
11	FH2848	61	6	2.572	0.721	0.611	-0.180
12	INRA21	61	5	2.454	0.574	0.593	0.032
13	INU005	61	5	2.837	0.689	0.648	-0.063
14	INU030	61	4	2.289	0.492	0.563	0.127
15	INU055	61	4	3.222	0.590	0.690	0.144
16	LEI004	61	4	2.200	0.557	0.545	-0.022
17	REN105L03	61	6	3.919	0.705	0.745	0.054
18	REN162C04	61	5	2.897	0.656	0.655	-0.001
19	REN169D01	61	4	2.163	0.492	0.538	0.085
20	REN169O18	61	8	4.250	0.803	0.765	-0.050
21	REN247M23	61	4	1.695	0.295	0.410	0.280
22	REN54P11	61	5	2.545	0.607	0.607	0.001
23	REN64E19	61	6	2.015	0.475	0.504	0.056
24	VGL0760	61	10	5.022	0.770	0.801	0.038
25	VGL0910	61	7	4.373	0.705	0.771	0.086
26	VGL1063	61	10	3.797	0.705	0.737	0.043
27	VGL1165	61	12	6.156	0.885	0.838	-0.057
28	VGL1828	61	6	1.367	0.295	0.268	-0.100
29	VGL2009	61	6	4.023	0.689	0.751	0.084
30	VGL2409	61	5	4.118	0.721	0.757	0.047
31	VGL2918	61	10	5.823	0.836	0.828	-0.009
32	VGL3008	61	9	2.434	0.557	0.589	0.054
33	VGL3235	61	6	2.785	0.639	0.641	0.003

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	61	7	1.615	0.393	0.381	-0.034
2	DLA I-4ACA	61	6	2.762	0.672	0.638	-0.053
3	DLA I-4BCT	61	5	2.684	0.656	0.627	-0.045
4	DLA1131	61	5	1.978	0.508	0.494	-0.028
5	5ACA	61	4	1.555	0.361	0.357	-0.011
6	5ACT	61	4	2.647	0.672	0.622	-0.080
7	5BCA	61	4	1.589	0.344	0.371	0.072

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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