Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Jun 15, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=59)
1006	387 375 293 180	0.042
1045	376 371 277 186	0.025
1052	380 372 289 184	0.517
1054	382 379 277 184	0.042
1068	380 373 287 181	0.263
1091	381 371 277 181	0.008
1165	392 369 281 182	0.008
1166	388 379 277 184	0.085
1297	388 379 287 181	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=59)
2002	343 327 280	0.008
2003	343 324 282	0.008
2007	351 327 280	0.042
2017	343 322 280	0.475
2022	339 327 282	0.127
2039	345 327 276	0.025
2053	343 324 280	0.263
2067	343 322 284	0.034
2080	339 325 276	0.017

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=59)
1	AHT121	80	0.017
		88	0.008
		94	0.042
		100	0.195
		102	0.610
		104	0.085
		106	0.008
		108	0.017
		112	0.017
2	AHT137	131	0.398
		133	0.042
		135	0.008
		137	0.492
		141	0.008
		147	0.008
		151	0.025
		155	0.017
3	AHTH130	123	0.093
		125	0.042
		127	0.381
		129	0.042
		131	0.441
4	AHTh171-A	219	0.085
		223	0.441
		225	0.051
		233	0.424
5	AHTh260	238	0.364
		242	0.271
		244	0.017
		246	0.169
		248	0.025
		252	0.144
		254	0.008
6	AHTk211	87	0.212
		89	0.364
		91	0.102
		95	0.322
7	AHTk253	280	0.008
		286	0.068
		288	0.754
		290	0.059
		292	0.017
		294	0.093
8	C22.279	116	0.441
		118	0.136
		120	0.008
		122	0.008
		124	0.025
		126	0.381
9	FH2001	132	0.297
		140	0.008
		144	0.356
		148	0.314
		152	0.025
10	FH2054	152	0.424
		156	0.068
		160	0.059
		164	0.153
		168	0.271
		172	0.025
11	FH2848	232	0.025
		236	0.025
		238	0.042
		240	0.424
		242	0.458
		244	0.025
12	INRA21	91	0.059
		95	0.593
		97	0.059
		99	0.178
		101	0.110
13	INU005	110	0.203
		124	0.288
		126	0.475
		128	0.025
		130	0.008
14	INU030	144	0.017
		146	0.373
		150	0.542
		152	0.068
15	INU055	210	0.280
		214	0.068
		218	0.398
		220	0.254
16	LEI004	85	0.517
		95	0.432
		103	0.017
		107	0.034
17	REN105L03	227	0.390
		229	0.008
		231	0.195
		233	0.068
		235	0.144
		241	0.195
18	REN162C04	200	0.085
		204	0.076
		206	0.449
		208	0.034
		212	0.356
19	REN169D01	212	0.415
		216	0.542
		218	0.008
		220	0.034
20	REN169O18	158	0.059
		162	0.254
		164	0.161
		166	0.153
		168	0.339
		172	0.008
		174	0.008
		178	0.017
21	REN247M23	268	0.169
		270	0.737
		272	0.008
		278	0.085
22	REN54P11	226	0.475
		232	0.059
		234	0.398
		236	0.008
		238	0.059
23	REN64E19	139	0.017
		143	0.034
		145	0.017
		147	0.068
		153	0.195
		155	0.669
24	VGL0760	12	0.153
		13	0.322
		14	0.008
		18.2	0.076
		19.2	0.017
		20	0.008
		20.2	0.093
		21.2	0.212
		22.2	0.102
		23.2	0.008
25	VGL0910	16.1	0.008
		17.1	0.254
		18.1	0.068
		19.1	0.331
		20.1	0.153
		21.1	0.144
		22.1	0.042
26	VGL1063	8	0.008
		9	0.042
		10	0.127
		11	0.042
		12	0.364
		13	0.331
		14	0.059
		18	0.008
		19	0.008
		20	0.008
27	VGL1165	14	0.008
		15	0.178
		16	0.076
		17	0.254
		18	0.008
		21	0.008
		22	0.051
		23	0.008
		25	0.034
		26	0.220
		27	0.085
		28	0.068
28	VGL1828	15	0.042
		16	0.034
		17	0.034
		19	0.856
		20	0.008
		22	0.025
29	VGL2009	9	0.025
		11	0.305
		13	0.203
		14	0.169
		15	0.288
		16	0.008
30	VGL2409	15	0.339
		16	0.237
		17	0.153
		18	0.195
		19	0.076
31	VGL2918	12	0.017
		13	0.110
		14	0.169
		15	0.178
		16.3	0.008
		18.3	0.051
		19.3	0.059
		20.3	0.051
		21.3	0.280
		22.3	0.076
32	VGL3008	10	0.042
		13	0.008
		15	0.602
		16	0.025
		17	0.034
		18	0.186
		19	0.076
		20	0.017
		21	0.008
33	VGL3235	13	0.025
		14	0.432
		15	0.407
		16	0.110
		17	0.008
		19	0.017

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	59	6.273	3.158	0.628	0.643	0.025
	SE		0.364	0.196	0.024	0.022	0.015

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	59	5.000	2.132	0.516	0.500	-0.022
	SE		0.404	0.203	0.056	0.047	0.021

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	59	9	2.379	0.559	0.580	0.035
2	AHT137	59	8	2.480	0.627	0.597	-0.051
3	AHTH130	59	5	2.842	0.695	0.648	-0.072
4	AHTh171-A	59	4	2.607	0.559	0.616	0.093
5	AHTh260	59	7	3.894	0.712	0.743	0.042
6	AHTk211	59	4	3.428	0.678	0.708	0.043
7	AHTk253	59	6	1.706	0.407	0.414	0.017
8	C22.279	59	6	2.787	0.542	0.641	0.154
9	FH2001	59	5	3.188	0.695	0.686	-0.013
10	FH2054	59	6	3.507	0.763	0.715	-0.067
11	FH2848	59	6	2.546	0.712	0.607	-0.172
12	INRA21	59	5	2.483	0.576	0.597	0.035
13	INU005	59	5	2.854	0.678	0.650	-0.044
14	INU030	59	4	2.283	0.492	0.562	0.125
15	INU055	59	4	3.267	0.593	0.694	0.145
16	LEI004	59	4	2.196	0.576	0.545	-0.058
17	REN105L03	59	6	3.947	0.695	0.747	0.069
18	REN162C04	59	5	2.919	0.661	0.657	-0.005
19	REN169D01	59	4	2.138	0.475	0.532	0.108
20	REN169O18	59	8	4.298	0.814	0.767	-0.060
21	REN247M23	59	4	1.725	0.305	0.420	0.274
22	REN54P11	59	5	2.558	0.610	0.609	-0.002
23	REN64E19	59	6	2.030	0.475	0.507	0.065
24	VGL0760	59	10	5.071	0.763	0.803	0.050
25	VGL0910	59	7	4.457	0.712	0.776	0.082
26	VGL1063	59	10	3.765	0.712	0.734	0.031
27	VGL1165	59	12	6.007	0.881	0.834	-0.057
28	VGL1828	59	6	1.356	0.288	0.263	-0.097
29	VGL2009	59	6	4.050	0.678	0.753	0.100
30	VGL2409	59	5	4.197	0.729	0.762	0.043
31	VGL2918	59	10	6.038	0.847	0.834	-0.016
32	VGL3008	59	9	2.459	0.559	0.593	0.057
33	VGL3235	59	6	2.737	0.644	0.635	-0.015

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	59	7	1.610	0.390	0.379	-0.028
2	DLA I-4ACA	59	6	2.796	0.678	0.642	-0.055
3	DLA I-4BCT	59	5	2.713	0.661	0.631	-0.047
4	DLA1131	59	5	2.018	0.525	0.504	-0.042
5	5ACA	59	4	1.552	0.356	0.356	-0.001
6	5ACT	59	4	2.676	0.678	0.626	-0.083
7	5BCA	59	4	1.556	0.322	0.358	0.099

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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