Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Jun 6, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=77)
1006	387 375 293 180	0.039
1045	376 371 277 186	0.032
1052	380 372 289 184	0.526
1054	382 379 277 184	0.045
1066	376 375 277 178	0.013
1068	380 373 287 181	0.247
1091	381 371 277 181	0.006
1165	392 369 281 182	0.006
1166	388 379 277 184	0.078
1297	388 379 287 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=77)
2002	343 327 280	0.006
2003	343 324 282	0.006
2007	351 327 280	0.039
2017	343 322 280	0.481
2022	339 327 282	0.123
2039	345 327 276	0.032
2047	339 331 280	0.013
2053	343 324 280	0.247
2067	343 322 284	0.039
2080	339 325 276	0.013

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=77)
1	AHT121	80	0.019
		88	0.006
		94	0.045
		100	0.195
		102	0.617
		104	0.071
		106	0.013
		108	0.019
		112	0.013
2	AHT137	131	0.409
		133	0.065
		135	0.006
		137	0.474
		141	0.006
		147	0.006
		151	0.019
		155	0.013
3	AHTH130	123	0.097
		125	0.039
		127	0.383
		129	0.052
		131	0.429
4	AHTh171-A	219	0.091
		223	0.506
		225	0.039
		233	0.364
5	AHTh260	238	0.344
		242	0.240
		244	0.013
		246	0.175
		248	0.019
		252	0.201
		254	0.006
6	AHTk211	87	0.208
		89	0.351
		91	0.097
		95	0.344
7	AHTk253	280	0.006
		286	0.065
		288	0.740
		290	0.065
		292	0.013
		294	0.110
8	C22.279	116	0.455
		118	0.162
		120	0.006
		122	0.006
		124	0.019
		126	0.351
9	FH2001	132	0.364
		140	0.006
		144	0.331
		148	0.279
		152	0.019
10	FH2054	152	0.448
		156	0.052
		160	0.058
		164	0.169
		168	0.253
		172	0.019
11	FH2848	232	0.032
		236	0.026
		238	0.032
		240	0.409
		242	0.481
		244	0.019
12	INRA21	91	0.058
		95	0.591
		97	0.065
		99	0.156
		101	0.130
13	INU005	110	0.188
		124	0.286
		126	0.500
		128	0.019
		130	0.006
14	INU030	144	0.013
		146	0.370
		150	0.545
		152	0.071
15	INU055	210	0.260
		214	0.084
		218	0.435
		220	0.221
16	LEI004	85	0.448
		95	0.506
		103	0.013
		107	0.032
17	REN105L03	227	0.351
		229	0.006
		231	0.234
		233	0.071
		235	0.136
		241	0.201
18	REN162C04	200	0.117
		204	0.071
		206	0.409
		208	0.026
		212	0.377
19	REN169D01	212	0.403
		216	0.558
		218	0.006
		220	0.032
20	REN169O18	158	0.065
		162	0.273
		164	0.130
		166	0.136
		168	0.351
		172	0.006
		174	0.026
		178	0.013
21	REN247M23	268	0.136
		270	0.779
		272	0.013
		276	0.006
		278	0.065
22	REN54P11	226	0.429
		232	0.071
		234	0.422
		236	0.026
		238	0.052
23	REN64E19	139	0.013
		143	0.032
		145	0.019
		147	0.052
		153	0.208
		155	0.675
24	VGL0760	12	0.143
		13	0.299
		14	0.013
		18.2	0.065
		19.2	0.013
		20	0.006
		20.2	0.110
		21.2	0.253
		22.2	0.078
		23.2	0.019
25	VGL0910	16.1	0.006
		17.1	0.234
		18.1	0.084
		19.1	0.364
		20.1	0.136
		21.1	0.143
		22.1	0.032
26	VGL1063	8	0.006
		9	0.045
		10	0.130
		11	0.058
		12	0.344
		13	0.331
		14	0.065
		18	0.006
		19	0.006
		20	0.006
27	VGL1165	14	0.013
		15	0.195
		16	0.071
		17	0.208
		18	0.006
		21	0.006
		22	0.039
		23	0.019
		25	0.045
		26	0.253
		27	0.084
		28	0.058
28	VGL1828	15	0.045
		16	0.052
		17	0.039
		19	0.838
		20	0.006
		22	0.019
29	VGL2009	9	0.019
		11	0.273
		13	0.208
		14	0.214
		15	0.279
		16	0.006
30	VGL2409	15	0.370
		16	0.273
		17	0.136
		18	0.162
		19	0.058
31	VGL2918	12	0.013
		13	0.110
		14	0.188
		15	0.188
		16.3	0.006
		18.3	0.039
		19.3	0.058
		20.3	0.039
		21.3	0.273
		22.3	0.084
32	VGL3008	10	0.039
		13	0.013
		15	0.604
		16	0.019
		17	0.039
		18	0.175
		19	0.091
		20	0.013
		21	0.006
33	VGL3235	13	0.019
		14	0.403
		15	0.383
		16	0.156
		17	0.006
		19	0.032

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	77	6.303	3.148	0.622	0.643	0.034
	SE		0.360	0.193	0.023	0.022	0.013

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	77	5.286	2.137	0.482	0.503	0.047
	SE		0.389	0.196	0.047	0.045	0.015

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	77	9	2.343	0.545	0.573	0.048
2	AHT137	77	8	2.519	0.623	0.603	-0.034
3	AHTH130	77	5	2.906	0.688	0.656	-0.050
4	AHTh171-A	77	4	2.509	0.532	0.601	0.115
5	AHTh260	77	7	4.032	0.688	0.752	0.085
6	AHTk211	77	4	3.401	0.662	0.706	0.062
7	AHTk253	77	6	1.758	0.416	0.431	0.036
8	C22.279	77	6	2.806	0.571	0.644	0.112
9	FH2001	77	5	3.122	0.675	0.680	0.006
10	FH2054	77	6	3.335	0.727	0.700	-0.039
11	FH2848	77	6	2.491	0.688	0.599	-0.150
12	INRA21	77	5	2.513	0.610	0.602	-0.014
13	INU005	77	5	2.721	0.623	0.632	0.014
14	INU030	77	4	2.274	0.519	0.560	0.073
15	INU055	77	4	3.199	0.636	0.687	0.074
16	LEI004	77	4	2.181	0.519	0.541	0.041
17	REN105L03	77	6	4.135	0.701	0.758	0.075
18	REN162C04	77	5	3.043	0.649	0.671	0.033
19	REN169D01	77	4	2.105	0.442	0.525	0.159
20	REN169O18	77	8	4.203	0.792	0.762	-0.040
21	REN247M23	77	5	1.587	0.273	0.370	0.262
22	REN54P11	77	5	2.701	0.649	0.630	-0.031
23	REN64E19	77	6	1.986	0.455	0.496	0.084
24	VGL0760	77	10	5.076	0.779	0.803	0.030
25	VGL0910	77	7	4.272	0.727	0.766	0.050
26	VGL1063	77	10	3.924	0.753	0.745	-0.011
27	VGL1165	77	12	6.056	0.844	0.835	-0.011
28	VGL1828	77	6	1.412	0.312	0.292	-0.069
29	VGL2009	77	6	4.135	0.701	0.758	0.075
30	VGL2409	77	5	3.850	0.701	0.740	0.053
31	VGL2918	77	10	5.839	0.831	0.829	-0.003
32	VGL3008	77	9	2.454	0.571	0.593	0.036
33	VGL3235	77	6	2.988	0.623	0.665	0.063

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	77	7	1.639	0.377	0.390	0.034
2	DLA I-4ACA	77	6	2.788	0.623	0.641	0.028
3	DLA I-4BCT	77	5	2.680	0.610	0.627	0.026
4	DLA1131	77	6	2.033	0.494	0.508	0.029
5	5ACA	77	4	1.582	0.351	0.368	0.047
6	5ACT	77	5	2.668	0.610	0.625	0.024
7	5BCA	77	4	1.568	0.312	0.362	0.139

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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