Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Nov 23, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=47)
1006	387 375 293 180	0.05
1045	376 371 277 186	0.02
1052	380 372 289 184	0.50
1054	382 379 277 184	0.05
1068	380 373 287 181	0.30
1091	381 371 277 181	0.01
1165	392 369 281 182	0.01
1166	388 379 277 184	0.05

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=47)
2002	343 327 280	0.01
2003	343 324 282	0.01
2007	351 327 280	0.05
2017	343 322 280	0.45
2022	339 327 282	0.11
2039	345 327 276	0.02
2053	343 324 280	0.29
2067	343 322 284	0.04
2080	339 325 276	0.02

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=47)
1	AHT121	80	0.02
		88	0.01
		94	0.05
		100	0.18
		102	0.59
		104	0.10
		106	0.01
		108	0.02
		112	0.02
2	AHT137	131	0.37
		133	0.04
		135	0.01
		137	0.52
		141	0.01
		147	0.01
		151	0.02
		155	0.01
3	AHTH130	123	0.11
		125	0.03
		127	0.39
		129	0.04
		131	0.43
4	AHTh171-A	219	0.10
		223	0.43
		225	0.02
		233	0.46
5	AHTh260	238	0.38
		242	0.27
		244	0.02
		246	0.17
		248	0.03
		252	0.13
6	AHTk211	87	0.24
		89	0.35
		91	0.12
		95	0.29
7	AHTk253	280	0.01
		286	0.07
		288	0.72
		290	0.06
		292	0.02
		294	0.11
8	C22.279	116	0.40
		118	0.13
		120	0.01
		122	0.01
		124	0.03
		126	0.41
9	FH2001	132	0.31
		140	0.01
		144	0.37
		148	0.29
		152	0.02
10	FH2054	152	0.39
		156	0.06
		160	0.05
		164	0.14
		168	0.32
		172	0.03
11	FH2848	232	0.03
		236	0.03
		238	0.04
		240	0.44
		242	0.43
		244	0.03
12	INRA21	91	0.07
		95	0.55
		97	0.04
		99	0.20
		101	0.13
13	INU005	110	0.20
		124	0.29
		126	0.49
		128	0.02
14	INU030	144	0.01
		146	0.41
		150	0.53
		152	0.04
15	INU055	210	0.22
		214	0.06
		218	0.45
		220	0.27
16	LEI004	85	0.50
		95	0.45
		103	0.02
		107	0.03
17	REN105L03	227	0.43
		229	0.01
		231	0.20
		233	0.09
		235	0.09
		241	0.19
18	REN162C04	200	0.10
		204	0.10
		206	0.41
		208	0.04
		212	0.35
19	REN169D01	212	0.39
		216	0.56
		218	0.01
		220	0.03
20	REN169O18	158	0.06
		162	0.23
		164	0.16
		166	0.15
		168	0.36
		172	0.01
		178	0.02
21	REN247M23	268	0.17
		270	0.73
		272	0.01
		278	0.09
22	REN54P11	226	0.44
		232	0.05
		234	0.45
		236	0.01
		238	0.05
23	REN64E19	139	0.01
		143	0.04
		145	0.02
		147	0.07
		153	0.20
		155	0.65
24	VGL0760	12	0.15
		13	0.35
		14	0.01
		18.2	0.05
		19.2	0.02
		20	0.01
		20.2	0.11
		21.2	0.20
		22.2	0.09
		23.2	0.01
25	VGL0910	16.1	0.01
		17.1	0.30
		18.1	0.05
		19.1	0.33
		20.1	0.12
		21.1	0.15
		22.1	0.04
26	VGL1063	8	0.01
		9	0.02
		10	0.13
		11	0.04
		12	0.38
		13	0.31
		14	0.07
		18	0.01
		19	0.01
		20	0.01
27	VGL1165	14	0.01
		15	0.19
		16	0.05
		17	0.22
		18	0.01
		21	0.01
		22	0.06
		23	0.01
		25	0.02
		26	0.22
		27	0.11
		28	0.07
28	VGL1828	15	0.03
		16	0.04
		17	0.04
		19	0.85
		20	0.01
		22	0.02
29	VGL2009	9	0.03
		11	0.29
		13	0.19
		14	0.19
		15	0.29
		16	0.01
30	VGL2409	15	0.31
		16	0.22
		17	0.16
		18	0.21
		19	0.10
31	VGL2918	12	0.02
		13	0.12
		14	0.19
		15	0.19
		16.3	0.01
		18.3	0.02
		19.3	0.07
		20.3	0.04
		21.3	0.26
		22.3	0.07
32	VGL3008	10	0.03
		13	0.01
		15	0.64
		16	0.02
		17	0.04
		18	0.19
		19	0.05
		20	0.01
33	VGL3235	13	0.01
		14	0.45
		15	0.37
		16	0.14
		17	0.01
		19	0.02

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	47	6.152	3.157	0.634	0.645	0.017
	SE		0.359	0.194	0.023	0.021	0.014

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	47	5.000	2.154	0.505	0.500	0.010
	SE		0.404	0.218	0.064	0.051	0.037

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	47	9	2.573	0.596	0.611	0.026
2	AHT137	47	8	2.421	0.574	0.587	0.021
3	AHTH130	47	5	2.856	0.702	0.650	-0.080
4	AHTh171-A	47	4	2.500	0.617	0.600	-0.028
5	AHTh260	47	6	3.786	0.702	0.736	0.046
6	AHTk211	47	4	3.580	0.681	0.721	0.055
7	AHTk253	47	6	1.835	0.447	0.455	0.018
8	C22.279	47	6	2.832	0.574	0.647	0.112
9	FH2001	47	5	3.156	0.681	0.683	0.003
10	FH2054	47	6	3.523	0.787	0.716	-0.099
11	FH2848	47	6	2.658	0.723	0.624	-0.160
12	INRA21	47	5	2.699	0.638	0.629	-0.014
13	INU005	47	4	2.753	0.660	0.637	-0.036
14	INU030	47	4	2.188	0.532	0.543	0.020
15	INU055	47	4	3.083	0.638	0.676	0.055
16	LEI004	47	4	2.217	0.532	0.549	0.031
17	REN105L03	47	6	3.660	0.660	0.727	0.092
18	REN162C04	47	5	3.169	0.723	0.684	-0.057
19	REN169D01	47	4	2.110	0.426	0.526	0.191
20	REN169O18	47	7	4.204	0.787	0.762	-0.033
21	REN247M23	47	4	1.739	0.383	0.425	0.099
22	REN54P11	47	5	2.527	0.638	0.604	-0.056
23	REN64E19	47	6	2.128	0.468	0.530	0.117
24	VGL0760	47	10	4.797	0.723	0.792	0.086
25	VGL0910	47	7	4.200	0.660	0.762	0.134
26	VGL1063	47	10	3.754	0.723	0.734	0.014
27	VGL1165	47	12	6.205	0.872	0.839	-0.040
28	VGL1828	47	6	1.371	0.298	0.270	-0.101
29	VGL2009	47	6	4.176	0.660	0.761	0.133
30	VGL2409	47	5	4.445	0.809	0.775	-0.043
31	VGL2918	47	10	6.019	0.851	0.834	-0.021
32	VGL3008	47	8	2.220	0.489	0.550	0.110
33	VGL3235	47	6	2.793	0.660	0.642	-0.028

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	47	7	1.549	0.340	0.354	0.039
2	DLA I-4ACA	47	6	2.825	0.660	0.646	-0.021
3	DLA I-4BCT	47	5	2.772	0.660	0.639	-0.032
4	DLA1131	47	5	2.145	0.596	0.534	-0.116
5	5ACA	47	4	1.524	0.319	0.344	0.072
6	5ACT	47	4	2.737	0.681	0.635	-0.073
7	5BCA	47	4	1.529	0.277	0.346	0.201

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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