Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Feb 20, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=52)
1006	387 375 293 180	0.048
1045	376 371 277 186	0.029
1052	380 372 289 184	0.510
1054	382 379 277 184	0.048
1068	380 373 287 181	0.288
1091	381 371 277 181	0.010
1165	392 369 281 182	0.010
1166	388 379 277 184	0.048
1297	388 379 287 181	0.010

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=52)
2002	343 327 280	0.010
2003	343 324 282	0.010
2007	351 327 280	0.048
2017	343 322 280	0.462
2022	339 327 282	0.096
2039	345 327 276	0.029
2053	343 324 280	0.288
2067	343 322 284	0.038
2080	339 325 276	0.019

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=52)
1	AHT121	80	0.019
		88	0.010
		94	0.048
		100	0.192
		102	0.587
		104	0.096
		106	0.010
		108	0.019
		112	0.019
2	AHT137	131	0.375
		133	0.038
		135	0.010
		137	0.510
		141	0.010
		147	0.010
		151	0.029
		155	0.019
3	AHTH130	123	0.106
		125	0.029
		127	0.365
		129	0.038
		131	0.462
4	AHTh171-A	219	0.087
		223	0.452
		225	0.038
		233	0.423
5	AHTh260	238	0.365
		242	0.260
		244	0.019
		246	0.173
		248	0.029
		252	0.144
		254	0.010
6	AHTk211	87	0.240
		89	0.356
		91	0.115
		95	0.288
7	AHTk253	280	0.010
		286	0.077
		288	0.721
		290	0.067
		292	0.019
		294	0.106
8	C22.279	116	0.413
		118	0.125
		120	0.010
		122	0.010
		124	0.029
		126	0.413
9	FH2001	132	0.298
		140	0.010
		144	0.356
		148	0.317
		152	0.019
10	FH2054	152	0.404
		156	0.067
		160	0.058
		164	0.144
		168	0.298
		172	0.029
11	FH2848	232	0.029
		236	0.029
		238	0.048
		240	0.423
		242	0.442
		244	0.029
12	INRA21	91	0.067
		95	0.567
		97	0.067
		99	0.183
		101	0.115
13	INU005	110	0.202
		124	0.279
		126	0.500
		128	0.019
14	INU030	144	0.019
		146	0.394
		150	0.510
		152	0.077
15	INU055	210	0.231
		214	0.058
		218	0.442
		220	0.269
16	LEI004	85	0.500
		95	0.442
		103	0.019
		107	0.038
17	REN105L03	227	0.413
		229	0.010
		231	0.192
		233	0.077
		235	0.115
		241	0.192
18	REN162C04	200	0.096
		204	0.087
		206	0.404
		208	0.038
		212	0.375
19	REN169D01	212	0.394
		216	0.567
		218	0.010
		220	0.029
20	REN169O18	158	0.058
		162	0.250
		164	0.173
		166	0.144
		168	0.337
		172	0.010
		174	0.010
		178	0.019
21	REN247M23	268	0.173
		270	0.740
		272	0.010
		278	0.077
22	REN54P11	226	0.413
		232	0.067
		234	0.442
		236	0.010
		238	0.067
23	REN64E19	139	0.019
		143	0.038
		145	0.019
		147	0.067
		153	0.202
		155	0.654
24	VGL0760	12	0.144
		13	0.327
		14	0.010
		18.2	0.048
		19.2	0.019
		20	0.010
		20.2	0.096
		21.2	0.231
		22.2	0.106
		23.2	0.010
25	VGL0910	16.1	0.010
		17.1	0.269
		18.1	0.058
		19.1	0.327
		20.1	0.125
		21.1	0.163
		22.1	0.048
26	VGL1063	8	0.010
		9	0.019
		10	0.125
		11	0.048
		12	0.404
		13	0.298
		14	0.067
		18	0.010
		19	0.010
		20	0.010
27	VGL1165	14	0.010
		15	0.192
		16	0.048
		17	0.221
		18	0.010
		21	0.010
		22	0.058
		23	0.010
		25	0.038
		26	0.231
		27	0.096
		28	0.077
28	VGL1828	15	0.048
		16	0.038
		17	0.038
		19	0.837
		20	0.010
		22	0.029
29	VGL2009	9	0.029
		11	0.279
		13	0.202
		14	0.192
		15	0.288
		16	0.010
30	VGL2409	15	0.298
		16	0.250
		17	0.163
		18	0.202
		19	0.087
31	VGL2918	12	0.019
		13	0.115
		14	0.183
		15	0.202
		16.3	0.010
		18.3	0.019
		19.3	0.067
		20.3	0.048
		21.3	0.260
		22.3	0.077
32	VGL3008	10	0.048
		13	0.010
		15	0.615
		16	0.019
		17	0.038
		18	0.183
		19	0.077
		20	0.010
33	VGL3235	13	0.010
		14	0.471
		15	0.365
		16	0.125
		17	0.010
		19	0.019

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	52	6.212	3.176	0.639	0.647	0.012
	SE		0.363	0.194	0.022	0.021	0.014

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	52	5.000	2.126	0.492	0.493	0.020
	SE		0.404	0.213	0.061	0.052	0.031

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	52	9	2.539	0.615	0.606	-0.015
2	AHT137	52	8	2.480	0.615	0.597	-0.031
3	AHTH130	52	5	2.778	0.673	0.640	-0.052
4	AHTh171-A	52	4	2.550	0.596	0.608	0.019
5	AHTh260	52	7	3.953	0.712	0.747	0.048
6	AHTk211	52	4	3.560	0.692	0.719	0.037
7	AHTk253	52	6	1.844	0.462	0.458	-0.008
8	C22.279	52	6	2.789	0.558	0.641	0.131
9	FH2001	52	5	3.159	0.673	0.683	0.015
10	FH2054	52	6	3.553	0.769	0.719	-0.071
11	FH2848	52	6	2.635	0.731	0.621	-0.178
12	INRA21	52	5	2.648	0.635	0.622	-0.020
13	INU005	52	4	2.711	0.673	0.631	-0.067
14	INU030	52	4	2.373	0.538	0.579	0.069
15	INU055	52	4	3.080	0.596	0.675	0.117
16	LEI004	52	4	2.235	0.558	0.553	-0.009
17	REN105L03	52	6	3.784	0.673	0.736	0.085
18	REN162C04	52	5	3.106	0.731	0.678	-0.078
19	REN169D01	52	4	2.091	0.462	0.522	0.116
20	REN169O18	52	8	4.340	0.788	0.770	-0.025
21	REN247M23	52	4	1.712	0.346	0.416	0.168
22	REN54P11	52	5	2.661	0.673	0.624	-0.078
23	REN64E19	52	6	2.105	0.481	0.525	0.084
24	VGL0760	52	10	4.894	0.750	0.796	0.057
25	VGL0910	52	7	4.397	0.692	0.773	0.104
26	VGL1063	52	10	3.634	0.712	0.725	0.018
27	VGL1165	52	12	6.181	0.885	0.838	-0.055
28	VGL1828	52	6	1.416	0.327	0.294	-0.112
29	VGL2009	52	6	4.173	0.673	0.760	0.115
30	VGL2409	52	5	4.418	0.788	0.774	-0.019
31	VGL2918	52	10	5.936	0.846	0.832	-0.018
32	VGL3008	52	8	2.368	0.519	0.578	0.101
33	VGL3235	52	6	2.691	0.654	0.628	-0.041

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	52	7	1.548	0.346	0.354	0.022
2	DLA I-4ACA	52	6	2.793	0.654	0.642	-0.018
3	DLA I-4BCT	52	5	2.709	0.635	0.631	-0.006
4	DLA1131	52	5	2.151	0.577	0.535	-0.078
5	5ACA	52	4	1.495	0.308	0.331	0.071
6	5ACT	52	4	2.684	0.654	0.627	-0.042
7	5BCA	52	4	1.498	0.269	0.333	0.191

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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