Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Jul 24, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=77)
1006	387 375 293 180	0.039
1045	376 371 277 186	0.032
1052	380 372 289 184	0.526
1054	382 379 277 184	0.045
1066	376 375 277 178	0.013
1068	380 373 287 181	0.247
1091	381 371 277 181	0.006
1165	392 369 281 182	0.006
1166	388 379 277 184	0.078
1297	388 379 287 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=77)
2002	343 327 280	0.006
2003	343 324 282	0.006
2007	351 327 280	0.039
2017	343 322 280	0.481
2022	339 327 282	0.123
2039	345 327 276	0.032
2047	339 331 280	0.013
2053	343 324 280	0.247
2067	343 322 284	0.039
2080	339 325 276	0.013

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=78)
1	AHT121	80	0.019
		88	0.006
		94	0.045
		100	0.192
		102	0.622
		104	0.071
		106	0.013
		108	0.019
		112	0.013
2	AHT137	131	0.404
		133	0.064
		135	0.006
		137	0.481
		141	0.006
		147	0.006
		151	0.019
		155	0.013
3	AHTH130	123	0.096
		125	0.038
		127	0.385
		129	0.058
		131	0.423
4	AHTh171-A	219	0.090
		223	0.513
		225	0.038
		233	0.359
5	AHTh260	238	0.340
		242	0.237
		244	0.013
		246	0.173
		248	0.019
		252	0.212
		254	0.006
6	AHTk211	87	0.205
		89	0.353
		91	0.096
		95	0.346
7	AHTk253	280	0.006
		286	0.071
		288	0.737
		290	0.064
		292	0.013
		294	0.109
8	C22.279	116	0.455
		118	0.160
		120	0.006
		122	0.006
		124	0.019
		126	0.353
9	FH2001	132	0.372
		140	0.006
		144	0.327
		148	0.276
		152	0.019
10	FH2054	152	0.449
		156	0.051
		160	0.058
		164	0.173
		168	0.250
		172	0.019
11	FH2848	232	0.032
		236	0.026
		238	0.032
		240	0.410
		242	0.481
		244	0.019
12	INRA21	91	0.058
		95	0.583
		97	0.071
		99	0.154
		101	0.135
13	INU005	110	0.186
		124	0.282
		126	0.506
		128	0.019
		130	0.006
14	INU030	144	0.013
		146	0.365
		150	0.551
		152	0.071
15	INU055	210	0.256
		214	0.083
		218	0.436
		220	0.224
16	LEI004	85	0.455
		95	0.500
		103	0.013
		107	0.032
17	REN105L03	227	0.346
		229	0.006
		231	0.237
		233	0.071
		235	0.141
		241	0.199
18	REN162C04	200	0.115
		204	0.071
		206	0.404
		208	0.032
		212	0.378
19	REN169D01	212	0.404
		216	0.558
		218	0.006
		220	0.032
20	REN169O18	158	0.064
		162	0.282
		164	0.128
		166	0.135
		168	0.346
		172	0.006
		174	0.026
		178	0.013
21	REN247M23	268	0.135
		270	0.776
		272	0.013
		276	0.006
		278	0.071
22	REN54P11	226	0.429
		232	0.071
		234	0.423
		236	0.026
		238	0.051
23	REN64E19	139	0.013
		143	0.032
		145	0.019
		147	0.051
		153	0.218
		155	0.667
24	VGL0760	12	0.141
		13	0.295
		14	0.013
		18.2	0.064
		19.2	0.013
		20	0.006
		20.2	0.109
		21.2	0.263
		22.2	0.077
		23.2	0.019
25	VGL0910	16.1	0.006
		17.1	0.237
		18.1	0.083
		19.1	0.365
		20.1	0.135
		21.1	0.141
		22.1	0.032
26	VGL1063	8	0.006
		9	0.045
		10	0.141
		11	0.058
		12	0.340
		13	0.327
		14	0.064
		18	0.006
		19	0.006
		20	0.006
27	VGL1165	14	0.013
		15	0.192
		16	0.071
		17	0.205
		18	0.013
		21	0.006
		22	0.038
		23	0.019
		25	0.045
		26	0.256
		27	0.083
		28	0.058
28	VGL1828	15	0.045
		16	0.051
		17	0.038
		18	0.006
		19	0.833
		20	0.006
		22	0.019
29	VGL2009	9	0.019
		11	0.269
		13	0.205
		14	0.218
		15	0.282
		16	0.006
30	VGL2409	15	0.372
		16	0.269
		17	0.135
		18	0.167
		19	0.058
31	VGL2918	12	0.013
		13	0.109
		14	0.186
		15	0.186
		16.3	0.006
		18.3	0.038
		19.3	0.058
		20.3	0.038
		21.3	0.282
		22.3	0.083
32	VGL3008	10	0.038
		13	0.013
		15	0.596
		16	0.019
		17	0.045
		18	0.179
		19	0.090
		20	0.013
		21	0.006
33	VGL3235	13	0.019
		14	0.397
		15	0.385
		16	0.160
		17	0.006
		19	0.032

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	78	6.333	3.148	0.622	0.643	0.035
	SE		0.360	0.192	0.023	0.021	0.012

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	78	5.286	2.132	0.483	0.501	0.044
	SE		0.389	0.198	0.049	0.046	0.016

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	78	9	2.316	0.538	0.568	0.052
2	AHT137	78	8	2.506	0.615	0.601	-0.024
3	AHTH130	78	5	2.933	0.692	0.659	-0.051
4	AHTh171-A	78	4	2.491	0.526	0.599	0.122
5	AHTh260	78	7	4.049	0.679	0.753	0.098
6	AHTk211	78	4	3.385	0.667	0.705	0.054
7	AHTk253	78	6	1.771	0.423	0.435	0.028
8	C22.279	78	6	2.797	0.577	0.642	0.102
9	FH2001	78	5	3.110	0.667	0.679	0.017
10	FH2054	78	6	3.332	0.731	0.700	-0.044
11	FH2848	78	6	2.484	0.692	0.597	-0.159
12	INRA21	78	5	2.562	0.615	0.610	-0.009
13	INU005	78	5	2.696	0.615	0.629	0.022
14	INU030	78	4	2.260	0.513	0.557	0.080
15	INU055	78	4	3.195	0.641	0.687	0.067
16	LEI004	78	4	2.182	0.513	0.542	0.053
17	REN105L03	78	6	4.159	0.705	0.760	0.072
18	REN162C04	78	5	3.073	0.654	0.675	0.031
19	REN169D01	78	4	2.104	0.449	0.525	0.145
20	REN169O18	78	8	4.186	0.782	0.761	-0.028
21	REN247M23	78	5	1.600	0.282	0.375	0.248
22	REN54P11	78	5	2.690	0.654	0.628	-0.041
23	REN64E19	78	6	2.016	0.449	0.504	0.109
24	VGL0760	78	10	5.036	0.769	0.801	0.040
25	VGL0910	78	7	4.241	0.731	0.764	0.044
26	VGL1063	78	10	3.971	0.744	0.748	0.006
27	VGL1165	78	12	6.087	0.846	0.836	-0.012
28	VGL1828	78	7	1.426	0.321	0.299	-0.072
29	VGL2009	78	6	4.132	0.705	0.758	0.070
30	VGL2409	78	5	3.847	0.705	0.740	0.047
31	VGL2918	78	10	5.748	0.821	0.826	0.007
32	VGL3008	78	9	2.501	0.577	0.600	0.039
33	VGL3235	78	6	3.003	0.628	0.667	0.058

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	78	7	1.628	0.372	0.386	0.036
2	DLA I-4ACA	78	6	2.788	0.623	0.641	0.028
3	DLA I-4BCT	78	5	2.677	0.615	0.626	0.018
4	DLA1131	78	6	2.037	0.500	0.509	0.018
5	5ACA	78	4	1.573	0.346	0.364	0.049
6	5ACT	78	5	2.665	0.615	0.625	0.015
7	5BCA	78	4	1.559	0.308	0.358	0.141

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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