Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Jul 13, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=60)
1006	387 375 293 180	0.042
1045	376 371 277 186	0.025
1052	380 372 289 184	0.517
1054	382 379 277 184	0.050
1068	380 373 287 181	0.258
1091	381 371 277 181	0.008
1165	392 369 281 182	0.008
1166	388 379 277 184	0.083
1297	388 379 287 181	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=60)
2002	343 327 280	0.008
2003	343 324 282	0.008
2007	351 327 280	0.042
2017	343 322 280	0.475
2022	339 327 282	0.133
2039	345 327 276	0.025
2053	343 324 280	0.258
2067	343 322 284	0.033
2080	339 325 276	0.017

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=60)
1	AHT121	80	0.025
		88	0.008
		94	0.042
		100	0.192
		102	0.608
		104	0.083
		106	0.008
		108	0.017
		112	0.017
2	AHT137	131	0.400
		133	0.042
		135	0.008
		137	0.492
		141	0.008
		147	0.008
		151	0.025
		155	0.017
3	AHTH130	123	0.092
		125	0.050
		127	0.383
		129	0.042
		131	0.433
4	AHTh171-A	219	0.083
		223	0.442
		225	0.050
		233	0.425
5	AHTh260	238	0.367
		242	0.267
		244	0.017
		246	0.175
		248	0.025
		252	0.142
		254	0.008
6	AHTk211	87	0.217
		89	0.358
		91	0.100
		95	0.325
7	AHTk253	280	0.008
		286	0.067
		288	0.742
		290	0.067
		292	0.017
		294	0.100
8	C22.279	116	0.450
		118	0.133
		120	0.008
		122	0.008
		124	0.025
		126	0.375
9	FH2001	132	0.300
		140	0.008
		144	0.350
		148	0.317
		152	0.025
10	FH2054	152	0.425
		156	0.067
		160	0.058
		164	0.150
		168	0.275
		172	0.025
11	FH2848	232	0.025
		236	0.025
		238	0.042
		240	0.425
		242	0.458
		244	0.025
12	INRA21	91	0.058
		95	0.600
		97	0.058
		99	0.175
		101	0.108
13	INU005	110	0.200
		124	0.292
		126	0.475
		128	0.025
		130	0.008
14	INU030	144	0.017
		146	0.375
		150	0.542
		152	0.067
15	INU055	210	0.275
		214	0.067
		218	0.408
		220	0.250
16	LEI004	85	0.508
		95	0.442
		103	0.017
		107	0.033
17	REN105L03	227	0.392
		229	0.008
		231	0.192
		233	0.067
		235	0.142
		241	0.200
18	REN162C04	200	0.083
		204	0.075
		206	0.442
		208	0.033
		212	0.367
19	REN169D01	212	0.417
		216	0.542
		218	0.008
		220	0.033
20	REN169O18	158	0.058
		162	0.250
		164	0.158
		166	0.150
		168	0.350
		172	0.008
		174	0.008
		178	0.017
21	REN247M23	268	0.167
		270	0.742
		272	0.008
		278	0.083
22	REN54P11	226	0.467
		232	0.058
		234	0.408
		236	0.008
		238	0.058
23	REN64E19	139	0.017
		143	0.033
		145	0.017
		147	0.067
		153	0.192
		155	0.675
24	VGL0760	12	0.158
		13	0.317
		14	0.008
		18.2	0.075
		19.2	0.017
		20	0.008
		20.2	0.092
		21.2	0.217
		22.2	0.100
		23.2	0.008
25	VGL0910	16.1	0.008
		17.1	0.250
		18.1	0.067
		19.1	0.333
		20.1	0.158
		21.1	0.142
		22.1	0.042
26	VGL1063	8	0.008
		9	0.042
		10	0.133
		11	0.042
		12	0.358
		13	0.325
		14	0.067
		18	0.008
		19	0.008
		20	0.008
27	VGL1165	14	0.017
		15	0.175
		16	0.075
		17	0.250
		18	0.008
		21	0.008
		22	0.050
		23	0.008
		25	0.033
		26	0.217
		27	0.092
		28	0.067
28	VGL1828	15	0.042
		16	0.033
		17	0.033
		19	0.858
		20	0.008
		22	0.025
29	VGL2009	9	0.025
		11	0.300
		13	0.208
		14	0.167
		15	0.292
		16	0.008
30	VGL2409	15	0.342
		16	0.233
		17	0.150
		18	0.200
		19	0.075
31	VGL2918	12	0.017
		13	0.108
		14	0.167
		15	0.183
		16.3	0.008
		18.3	0.050
		19.3	0.058
		20.3	0.050
		21.3	0.283
		22.3	0.075
32	VGL3008	10	0.042
		13	0.008
		15	0.600
		16	0.025
		17	0.033
		18	0.183
		19	0.083
		20	0.017
		21	0.008
33	VGL3235	13	0.025
		14	0.425
		15	0.400
		16	0.125
		17	0.008
		19	0.017

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	60	6.273	3.158	0.628	0.643	0.025
	SE		0.364	0.196	0.024	0.022	0.015

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	60	5.000	2.138	0.521	0.502	-0.030
	SE		0.404	0.202	0.055	0.046	0.019

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	60	9	2.399	0.567	0.583	0.028
2	AHT137	60	8	2.472	0.633	0.595	-0.064
3	AHTH130	60	5	2.879	0.700	0.653	-0.073
4	AHTh171-A	60	4	2.596	0.567	0.615	0.078
5	AHTh260	60	7	3.888	0.717	0.743	0.035
6	AHTk211	60	4	3.437	0.683	0.709	0.036
7	AHTk253	60	6	1.757	0.417	0.431	0.033
8	C22.279	60	6	2.765	0.533	0.638	0.164
9	FH2001	60	5	3.190	0.700	0.687	-0.020
10	FH2054	60	6	3.482	0.767	0.713	-0.076
11	FH2848	60	6	2.536	0.717	0.606	-0.183
12	INRA21	60	5	2.444	0.567	0.591	0.041
13	INU005	60	5	2.846	0.683	0.649	-0.054
14	INU030	60	4	2.279	0.500	0.561	0.109
15	INU055	60	4	3.233	0.583	0.691	0.155
16	LEI004	60	4	2.198	0.567	0.545	-0.039
17	REN105L03	60	6	3.926	0.700	0.745	0.061
18	REN162C04	60	5	2.914	0.650	0.657	0.010
19	REN169D01	60	4	2.136	0.483	0.532	0.091
20	REN169O18	60	8	4.230	0.800	0.764	-0.048
21	REN247M23	60	4	1.710	0.300	0.415	0.277
22	REN54P11	60	5	2.555	0.600	0.609	0.014
23	REN64E19	60	6	2.006	0.467	0.502	0.070
24	VGL0760	60	10	5.081	0.767	0.803	0.045
25	VGL0910	60	7	4.444	0.717	0.775	0.075
26	VGL1063	60	10	3.846	0.717	0.740	0.032
27	VGL1165	60	12	6.149	0.883	0.837	-0.055
28	VGL1828	60	6	1.349	0.283	0.259	-0.096
29	VGL2009	60	6	4.049	0.683	0.753	0.093
30	VGL2409	60	5	4.179	0.733	0.761	0.036
31	VGL2918	60	10	5.960	0.850	0.832	-0.021
32	VGL3008	60	9	2.473	0.567	0.596	0.049
33	VGL3235	60	6	2.799	0.633	0.643	0.015

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	60	7	1.629	0.400	0.386	-0.036
2	DLA I-4ACA	60	6	2.804	0.683	0.643	-0.062
3	DLA I-4BCT	60	5	2.720	0.667	0.632	-0.054
4	DLA1131	60	5	1.998	0.517	0.499	-0.034
5	5ACA	60	4	1.566	0.367	0.362	-0.014
6	5ACT	60	4	2.680	0.683	0.627	-0.090
7	5BCA	60	4	1.571	0.333	0.363	0.083

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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