Statistics and Breed-wide Allele Frequency - Great Dane

Updated Apr 19, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Great Dane (n=75)
1006	387 375 293 180	0.013
1009	382 377 277 184	0.100
1016	382 371 277 178	0.207
1030	380 373 293 178	0.260
1066	376 375 277 178	0.160
1068	380 373 287 181	0.007
1091	381 371 277 181	0.060
1094	395 375 277 176	0.033
1129	382 371 277 181	0.087
1273	376 375 277 176	0.007
1274	385 371 277 181	0.007
1275	387 371 277 181	0.020
1276	392 373 281 182	0.020
1277	394 369 277 183	0.007
1278	399 373 277 181	0.013

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Great Dane (n=75)
2003	343 324 282	0.007
2005	339 322 280	0.053
2007	351 327 280	0.013
2014	339 322 284	0.033
2022	339 327 282	0.100
2023	341 323 282	0.260
2033	339 323 282	0.180
2046	339 329 280	0.320
2053	343 324 280	0.007
2086	339 329 284	0.007
2136	353 324 280	0.020

Allele Frequencies

#	Locus Name	Allele	Great Dane (n=75)
1	AHT121	80	0.020
		94	0.087
		98	0.307
		100	0.007
		102	0.027
		104	0.007
		106	0.120
		108	0.013
		110	0.053
		112	0.020
		114	0.233
		118	0.107
2	AHT137	129	0.007
		131	0.140
		133	0.033
		137	0.080
		141	0.193
		147	0.540
		151	0.007
3	AHTH130	117	0.020
		119	0.127
		121	0.193
		123	0.033
		125	0.007
		127	0.440
		131	0.047
		133	0.133
4	AHTh171-A	219	0.320
		221	0.013
		225	0.033
		227	0.167
		229	0.200
		233	0.167
		235	0.100
5	AHTh260	238	0.013
		242	0.007
		244	0.307
		246	0.540
		248	0.080
		250	0.047
		254	0.007
6	AHTk211	87	0.020
		89	0.320
		91	0.400
		95	0.260
7	AHTk253	286	0.207
		288	0.533
		290	0.233
		292	0.027
8	C22.279	116	0.047
		118	0.600
		120	0.100
		122	0.040
		124	0.213
9	FH2001	128	0.007
		132	0.147
		136	0.047
		144	0.567
		148	0.167
		152	0.053
		158	0.013
10	FH2054	148	0.020
		152	0.007
		156	0.460
		160	0.220
		164	0.167
		168	0.073
		172	0.020
		176	0.033
11	FH2848	232	0.053
		234	0.660
		238	0.213
		240	0.053
		242	0.020
12	INRA21	91	0.047
		95	0.393
		99	0.327
		101	0.213
		105	0.020
13	INU005	110	0.020
		122	0.073
		124	0.340
		126	0.553
		132	0.013
14	INU030	144	0.040
		146	0.007
		150	0.673
		152	0.280
15	INU055	204	0.027
		208	0.073
		210	0.167
		212	0.280
		216	0.347
		218	0.107
16	LEI004	85	0.133
		95	0.773
		97	0.040
		107	0.007
		111	0.047
17	REN105L03	227	0.067
		231	0.220
		233	0.080
		235	0.467
		241	0.067
		245	0.100
18	REN162C04	192	0.080
		194	0.007
		202	0.280
		204	0.093
		206	0.120
		208	0.420
19	REN169D01	202	0.033
		212	0.227
		216	0.427
		220	0.313
20	REN169O18	164	0.040
		166	0.120
		168	0.413
		170	0.420
		172	0.007
21	REN247M23	268	0.200
		272	0.793
		278	0.007
22	REN54P11	222	0.007
		226	0.167
		228	0.127
		232	0.047
		234	0.233
		238	0.420
23	REN64E19	139	0.147
		143	0.127
		145	0.133
		147	0.140
		149	0.360
		153	0.093
24	VGL0760	12	0.147
		13	0.020
		19.2	0.067
		20.2	0.040
		21.2	0.020
		22.2	0.153
		23.2	0.253
		24.2	0.273
		25.2	0.027
25	VGL0910	12	0.020
		14	0.033
		17.1	0.013
		18.1	0.013
		19	0.007
		19.1	0.067
		20.1	0.347
		21.1	0.347
		22.1	0.093
		23.1	0.040
		24.1	0.020
26	VGL1063	12	0.007
		13	0.067
		14	0.420
		15	0.373
		16	0.053
		17	0.053
		18	0.013
		19	0.013
27	VGL1165	15	0.007
		18	0.047
		19	0.040
		21	0.020
		22	0.007
		25	0.007
		26	0.180
		27	0.527
		28	0.033
		29	0.127
		31	0.007
28	VGL1828	14	0.027
		15	0.073
		16	0.327
		17	0.053
		19	0.167
		20	0.147
		21	0.033
		22	0.173
29	VGL2009	9	0.273
		13	0.013
		14	0.033
		15	0.640
		16	0.040
30	VGL2409	13	0.200
		14	0.007
		15	0.100
		16	0.060
		17	0.353
		18	0.240
		19	0.040
31	VGL2918	11	0.013
		12	0.020
		13	0.633
		14	0.113
		15	0.033
		16	0.047
		18.3	0.060
		19.3	0.040
		21.3	0.040
32	VGL3008	13	0.040
		14	0.033
		15	0.020
		16	0.120
		17	0.320
		18	0.287
		19	0.087
		20	0.040
		21	0.053
33	VGL3235	12	0.293
		13	0.047
		14	0.587
		16	0.007
		17	0.020
		18	0.047

Standard genetic assessment based on 33 autosomal STR loci

Great Dane

		N	Na	Ne	Ho	He	F
	Mean	75	6.606	3.239	0.620	0.655	0.057
	SE		0.376	0.183	0.024	0.021	0.016

Standard genetic assessment based on 7 STRs in the DLA region

Great Dane

		N	Na	Ne	Ho	He	F
	Mean	75	5.571	2.625	0.571	0.586	0.018
	SE		0.805	0.291	0.037	0.044	0.024

Standard genetic assessment for individual STR loci

Great Dane

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	75	12	5.365	0.867	0.814	-0.065
2	AHT137	75	7	2.808	0.547	0.644	0.151
3	AHTH130	75	8	3.724	0.547	0.731	0.253
4	AHTh171-A	75	7	4.779	0.693	0.791	0.123
5	AHTh260	75	7	2.535	0.573	0.606	0.053
6	AHTk211	75	4	3.027	0.680	0.670	-0.016
7	AHTk253	75	4	2.616	0.627	0.618	-0.015
8	C22.279	75	5	2.385	0.547	0.581	0.059
9	FH2001	75	7	2.662	0.627	0.624	-0.004
10	FH2054	75	8	3.389	0.707	0.705	-0.003
11	FH2848	75	5	2.053	0.400	0.513	0.220
12	INRA21	75	5	3.231	0.707	0.690	-0.023
13	INU005	75	5	2.338	0.480	0.572	0.161
14	INU030	75	4	1.875	0.507	0.467	-0.086
15	INU055	75	6	4.101	0.800	0.756	-0.058
16	LEI004	75	5	1.614	0.347	0.380	0.089
17	REN105L03	75	6	3.431	0.640	0.709	0.097
18	REN162C04	75	6	3.517	0.720	0.716	-0.006
19	REN169D01	75	4	3.006	0.507	0.667	0.241
20	REN169O18	75	5	2.753	0.667	0.637	-0.047
21	REN247M23	75	3	1.494	0.280	0.331	0.153
22	REN54P11	75	6	3.612	0.720	0.723	0.004
23	REN64E19	75	6	4.689	0.707	0.787	0.102
24	VGL0760	75	9	5.223	0.773	0.809	0.044
25	VGL0910	75	11	3.885	0.667	0.743	0.102
26	VGL1063	75	8	3.065	0.507	0.674	0.248
27	VGL1165	75	11	3.019	0.680	0.669	-0.017
28	VGL1828	75	8	5.100	0.827	0.804	-0.028
29	VGL2009	75	5	2.053	0.493	0.513	0.038
30	VGL2409	75	7	4.207	0.747	0.762	0.021
31	VGL2918	75	9	2.355	0.533	0.575	0.073
32	VGL3008	75	9	4.672	0.787	0.786	-0.001
33	VGL3235	75	6	2.299	0.547	0.565	0.032

Standard genetic assessment for 7 STRs in the DLA region

Great Dane

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	75	10	3.845	0.653	0.740	0.117
2	DLA I-4ACA	75	5	3.449	0.680	0.710	0.042
3	DLA I-4BCT	75	4	1.769	0.440	0.435	-0.012
4	DLA1131	75	7	2.261	0.507	0.558	0.091
5	5ACA	75	5	1.821	0.467	0.451	-0.035
6	5ACT	75	5	3.108	0.693	0.678	-0.022
7	5BCA	75	3	2.122	0.560	0.529	-0.059

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Great Dane

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Great Dane

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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