Statistics and Breed-wide Allele Frequency - Havana Silk

Updated Apr 17, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Havana Silk (n=53)
1003	387 375 277 186	0.066
1006	387 375 293 180	0.028
1016	382 371 277 178	0.094
1029	380 365 281 182	0.009
1030	380 373 293 178	0.038
1040	380 371 277 186	0.019
1054	382 379 277 184	0.066
1068	380 373 287 181	0.236
1092	376 379 277 181	0.189
1093	386 379 277 180	0.028
1115	386 371 277 182	0.057
1116	380 365 289 186	0.057
1117	376 373 277 180	0.075
1140	376 379 301 180	0.009
1262	382 377 289 180	0.028

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Havana Silk (n=53)
2001	343 324 284	0.066
2003	343 324 282	0.245
2005	339 322 280	0.028
2007	351 327 280	0.028
2016	339 323 284	0.009
2022	339 327 282	0.066
2023	341 323 282	0.038
2032	339 323 280	0.028
2053	343 324 280	0.255
2066	339 324 280	0.094
2070	347 324 282	0.057
2074	341 324 284	0.075
2075	341 327 282	0.009

Allele Frequencies

#	Locus Name	Allele	Havana Silk (n=53)
1	AHT121	92	0.094
		94	0.028
		96	0.038
		100	0.170
		102	0.094
		104	0.245
		106	0.075
		108	0.255
2	AHT137	131	0.245
		133	0.019
		137	0.151
		141	0.377
		143	0.028
		147	0.151
		149	0.028
3	AHTH130	119	0.236
		121	0.160
		125	0.283
		127	0.226
		129	0.066
		131	0.028
4	AHTh171-A	219	0.170
		225	0.094
		227	0.075
		229	0.358
		231	0.264
		233	0.028
		235	0.009
5	AHTh260	238	0.019
		244	0.113
		246	0.236
		248	0.425
		250	0.075
		254	0.132
6	AHTk211	87	0.387
		89	0.245
		91	0.009
		95	0.358
7	AHTk253	286	0.085
		288	0.519
		290	0.057
		292	0.340
8	C22.279	116	0.085
		118	0.330
		120	0.009
		124	0.264
		126	0.113
		130	0.198
9	FH2001	124	0.028
		132	0.717
		144	0.217
		148	0.009
		152	0.028
10	FH2054	152	0.047
		156	0.387
		160	0.019
		164	0.132
		168	0.245
		172	0.038
		176	0.132
11	FH2848	232	0.217
		236	0.368
		238	0.057
		240	0.113
		242	0.245
12	INRA21	91	0.066
		95	0.274
		97	0.453
		99	0.019
		101	0.160
		103	0.028
13	INU005	124	0.698
		126	0.142
		128	0.019
		132	0.028
		138	0.113
14	INU030	144	0.594
		148	0.009
		150	0.075
		152	0.321
15	INU055	210	0.349
		212	0.283
		214	0.198
		216	0.028
		218	0.142
16	LEI004	85	0.915
		95	0.038
		97	0.009
		107	0.038
17	REN105L03	227	0.009
		229	0.028
		231	0.321
		233	0.123
		237	0.160
		241	0.358
18	REN162C04	202	0.075
		204	0.075
		206	0.472
		208	0.292
		210	0.085
19	REN169D01	202	0.075
		210	0.349
		212	0.028
		214	0.085
		216	0.283
		218	0.028
		220	0.151
20	REN169O18	160	0.066
		162	0.613
		164	0.142
		166	0.066
		168	0.047
		170	0.066
21	REN247M23	268	0.245
		270	0.274
		272	0.264
		274	0.009
		276	0.179
		278	0.028
22	REN54P11	222	0.160
		226	0.189
		228	0.094
		232	0.189
		236	0.208
		238	0.160
23	REN64E19	139	0.066
		143	0.038
		145	0.038
		147	0.245
		149	0.198
		153	0.368
		155	0.047
24	VGL0760	12	0.038
		13	0.066
		14	0.057
		18.2	0.085
		20.2	0.019
		21.2	0.094
		22.2	0.340
		23.2	0.226
		24.2	0.075
25	VGL0910	16.1	0.094
		17.1	0.358
		18	0.009
		18.1	0.057
		19.1	0.151
		20.1	0.019
		21.1	0.179
		22	0.057
		22.1	0.057
		23.1	0.019
26	VGL1063	8	0.151
		12	0.066
		13	0.028
		14	0.104
		15	0.066
		16	0.009
		17	0.113
		18	0.038
		19	0.057
		20	0.198
		21	0.075
		22	0.094
27	VGL1165	18	0.151
		19	0.160
		21	0.113
		22	0.009
		26	0.321
		27	0.085
		28	0.094
		29	0.047
		31	0.009
		32	0.009
28	VGL1828	15	0.075
		16	0.462
		19	0.047
		20	0.104
		21	0.292
		23	0.019
29	VGL2009	11	0.292
		12	0.047
		13	0.179
		14	0.283
		15	0.179
		16	0.019
30	VGL2409	14	0.019
		16	0.330
		17	0.349
		18	0.255
		20	0.047
31	VGL2918	12	0.066
		13	0.594
		14	0.123
		15	0.009
		16	0.075
		18.3	0.028
		19.3	0.019
		22.3	0.085
32	VGL3008	13	0.085
		15	0.019
		17	0.019
		18	0.208
		19	0.217
		20	0.028
		21	0.396
		22	0.028
33	VGL3235	13	0.538
		14	0.113
		15	0.113
		16	0.009
		17	0.009
		18	0.123
		19	0.094

Standard genetic assessment based on 33 autosomal STR loci

Havana Silk

		N	Na	Ne	Ho	He	F
	Mean	53	6.455	3.800	0.735	0.696	-0.054
	SE		0.318	0.242	0.027	0.024	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Havana Silk

		N	Na	Ne	Ho	He	F
	Mean	53	5.000	2.990	0.682	0.628	-0.076
	SE		0.404	0.336	0.063	0.049	0.034

Standard genetic assessment for individual STR loci

Havana Silk

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	53	8	5.568	0.811	0.820	0.011
2	AHT137	53	7	3.999	0.906	0.750	-0.208
3	AHTH130	53	6	4.590	0.792	0.782	-0.013
4	AHTh171-A	53	7	4.122	0.717	0.757	0.053
5	AHTh260	53	6	3.674	0.774	0.728	-0.063
6	AHTk211	53	4	2.955	0.755	0.662	-0.141
7	AHTk253	53	4	2.532	0.566	0.605	0.064
8	C22.279	53	6	4.199	0.830	0.762	-0.090
9	FH2001	53	5	1.777	0.453	0.437	-0.036
10	FH2054	53	7	4.021	0.906	0.751	-0.205
11	FH2848	53	5	3.866	0.811	0.741	-0.094
12	INRA21	53	6	3.214	0.698	0.689	-0.013
13	INU005	53	5	1.918	0.528	0.479	-0.104
14	INU030	53	4	2.165	0.604	0.538	-0.122
15	INU055	53	5	3.817	0.811	0.738	-0.099
16	LEI004	53	4	1.190	0.151	0.160	0.055
17	REN105L03	53	6	3.662	0.811	0.727	-0.116
18	REN162C04	53	5	3.062	0.679	0.673	-0.009
19	REN169D01	53	7	4.180	0.849	0.761	-0.116
20	REN169O18	53	6	2.431	0.547	0.589	0.070
21	REN247M23	53	6	4.205	0.849	0.762	-0.114
22	REN54P11	53	6	5.727	0.811	0.825	0.017
23	REN64E19	53	7	4.095	0.792	0.756	-0.049
24	VGL0760	53	9	5.057	0.849	0.802	-0.058
25	VGL0910	53	10	4.932	0.792	0.797	0.006
26	VGL1063	53	12	8.737	0.943	0.886	-0.065
27	VGL1165	53	10	5.470	0.887	0.817	-0.085
28	VGL1828	53	6	3.142	0.755	0.682	-0.107
29	VGL2009	53	6	4.302	0.811	0.768	-0.057
30	VGL2409	53	5	3.352	0.736	0.702	-0.049
31	VGL2918	53	8	2.585	0.698	0.613	-0.138
32	VGL3008	53	8	3.896	0.660	0.743	0.112
33	VGL3235	53	7	2.951	0.679	0.661	-0.027

Standard genetic assessment for 7 STRs in the DLA region

Havana Silk

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	53	5	3.920	0.887	0.745	-0.190
2	DLA I-4ACA	53	6	3.996	0.830	0.750	-0.107
3	DLA I-4BCT	53	6	2.377	0.642	0.579	-0.107
4	DLA1131	53	6	3.918	0.736	0.745	0.012
5	5ACA	53	5	2.559	0.604	0.609	0.009
6	5ACT	53	4	1.550	0.340	0.355	0.043
7	5BCA	53	3	2.608	0.736	0.617	-0.193

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Havana Silk

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Havana Silk

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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