Updated Apr 17, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Havana Silk (n=53) |
---|---|---|
1003 | 387 375 277 186 | 0.066 |
1006 | 387 375 293 180 | 0.028 |
1016 | 382 371 277 178 | 0.094 |
1029 | 380 365 281 182 | 0.009 |
1030 | 380 373 293 178 | 0.038 |
1040 | 380 371 277 186 | 0.019 |
1054 | 382 379 277 184 | 0.066 |
1068 | 380 373 287 181 | 0.236 |
1092 | 376 379 277 181 | 0.189 |
1093 | 386 379 277 180 | 0.028 |
1115 | 386 371 277 182 | 0.057 |
1116 | 380 365 289 186 | 0.057 |
1117 | 376 373 277 180 | 0.075 |
1140 | 376 379 301 180 | 0.009 |
1262 | 382 377 289 180 | 0.028 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Havana Silk (n=53) |
---|---|---|
2001 | 343 324 284 | 0.066 |
2003 | 343 324 282 | 0.245 |
2005 | 339 322 280 | 0.028 |
2007 | 351 327 280 | 0.028 |
2016 | 339 323 284 | 0.009 |
2022 | 339 327 282 | 0.066 |
2023 | 341 323 282 | 0.038 |
2032 | 339 323 280 | 0.028 |
2053 | 343 324 280 | 0.255 |
2066 | 339 324 280 | 0.094 |
2070 | 347 324 282 | 0.057 |
2074 | 341 324 284 | 0.075 |
2075 | 341 327 282 | 0.009 |
Allele Frequencies
# | Locus Name | Allele | Havana Silk (n=53) |
---|---|---|---|
1 | AHT121 | 92 | 0.094 |
94 | 0.028 | ||
96 | 0.038 | ||
100 | 0.170 | ||
102 | 0.094 | ||
104 | 0.245 | ||
106 | 0.075 | ||
108 | 0.255 | ||
2 | AHT137 | 131 | 0.245 |
133 | 0.019 | ||
137 | 0.151 | ||
141 | 0.377 | ||
143 | 0.028 | ||
147 | 0.151 | ||
149 | 0.028 | ||
3 | AHTH130 | 119 | 0.236 |
121 | 0.160 | ||
125 | 0.283 | ||
127 | 0.226 | ||
129 | 0.066 | ||
131 | 0.028 | ||
4 | AHTh171-A | 219 | 0.170 |
225 | 0.094 | ||
227 | 0.075 | ||
229 | 0.358 | ||
231 | 0.264 | ||
233 | 0.028 | ||
235 | 0.009 | ||
5 | AHTh260 | 238 | 0.019 |
244 | 0.113 | ||
246 | 0.236 | ||
248 | 0.425 | ||
250 | 0.075 | ||
254 | 0.132 | ||
6 | AHTk211 | 87 | 0.387 |
89 | 0.245 | ||
91 | 0.009 | ||
95 | 0.358 | ||
7 | AHTk253 | 286 | 0.085 |
288 | 0.519 | ||
290 | 0.057 | ||
292 | 0.340 | ||
8 | C22.279 | 116 | 0.085 |
118 | 0.330 | ||
120 | 0.009 | ||
124 | 0.264 | ||
126 | 0.113 | ||
130 | 0.198 | ||
9 | FH2001 | 124 | 0.028 |
132 | 0.717 | ||
144 | 0.217 | ||
148 | 0.009 | ||
152 | 0.028 | ||
10 | FH2054 | 152 | 0.047 |
156 | 0.387 | ||
160 | 0.019 | ||
164 | 0.132 | ||
168 | 0.245 | ||
172 | 0.038 | ||
176 | 0.132 | ||
11 | FH2848 | 232 | 0.217 |
236 | 0.368 | ||
238 | 0.057 | ||
240 | 0.113 | ||
242 | 0.245 | ||
12 | INRA21 | 91 | 0.066 |
95 | 0.274 | ||
97 | 0.453 | ||
99 | 0.019 | ||
101 | 0.160 | ||
103 | 0.028 | ||
13 | INU005 | 124 | 0.698 |
126 | 0.142 | ||
128 | 0.019 | ||
132 | 0.028 | ||
138 | 0.113 | ||
14 | INU030 | 144 | 0.594 |
148 | 0.009 | ||
150 | 0.075 | ||
152 | 0.321 | ||
15 | INU055 | 210 | 0.349 |
212 | 0.283 | ||
214 | 0.198 | ||
216 | 0.028 | ||
218 | 0.142 | ||
16 | LEI004 | 85 | 0.915 |
95 | 0.038 | ||
97 | 0.009 | ||
107 | 0.038 | ||
17 | REN105L03 | 227 | 0.009 |
229 | 0.028 | ||
231 | 0.321 | ||
233 | 0.123 | ||
237 | 0.160 | ||
241 | 0.358 | ||
18 | REN162C04 | 202 | 0.075 |
204 | 0.075 | ||
206 | 0.472 | ||
208 | 0.292 | ||
210 | 0.085 | ||
19 | REN169D01 | 202 | 0.075 |
210 | 0.349 | ||
212 | 0.028 | ||
214 | 0.085 | ||
216 | 0.283 | ||
218 | 0.028 | ||
220 | 0.151 | ||
20 | REN169O18 | 160 | 0.066 |
162 | 0.613 | ||
164 | 0.142 | ||
166 | 0.066 | ||
168 | 0.047 | ||
170 | 0.066 | ||
21 | REN247M23 | 268 | 0.245 |
270 | 0.274 | ||
272 | 0.264 | ||
274 | 0.009 | ||
276 | 0.179 | ||
278 | 0.028 | ||
22 | REN54P11 | 222 | 0.160 |
226 | 0.189 | ||
228 | 0.094 | ||
232 | 0.189 | ||
236 | 0.208 | ||
238 | 0.160 | ||
23 | REN64E19 | 139 | 0.066 |
143 | 0.038 | ||
145 | 0.038 | ||
147 | 0.245 | ||
149 | 0.198 | ||
153 | 0.368 | ||
155 | 0.047 | ||
24 | VGL0760 | 12 | 0.038 |
13 | 0.066 | ||
14 | 0.057 | ||
18.2 | 0.085 | ||
20.2 | 0.019 | ||
21.2 | 0.094 | ||
22.2 | 0.340 | ||
23.2 | 0.226 | ||
24.2 | 0.075 | ||
25 | VGL0910 | 16.1 | 0.094 |
17.1 | 0.358 | ||
18 | 0.009 | ||
18.1 | 0.057 | ||
19.1 | 0.151 | ||
20.1 | 0.019 | ||
21.1 | 0.179 | ||
22 | 0.057 | ||
22.1 | 0.057 | ||
23.1 | 0.019 | ||
26 | VGL1063 | 8 | 0.151 |
12 | 0.066 | ||
13 | 0.028 | ||
14 | 0.104 | ||
15 | 0.066 | ||
16 | 0.009 | ||
17 | 0.113 | ||
18 | 0.038 | ||
19 | 0.057 | ||
20 | 0.198 | ||
21 | 0.075 | ||
22 | 0.094 | ||
27 | VGL1165 | 18 | 0.151 |
19 | 0.160 | ||
21 | 0.113 | ||
22 | 0.009 | ||
26 | 0.321 | ||
27 | 0.085 | ||
28 | 0.094 | ||
29 | 0.047 | ||
31 | 0.009 | ||
32 | 0.009 | ||
28 | VGL1828 | 15 | 0.075 |
16 | 0.462 | ||
19 | 0.047 | ||
20 | 0.104 | ||
21 | 0.292 | ||
23 | 0.019 | ||
29 | VGL2009 | 11 | 0.292 |
12 | 0.047 | ||
13 | 0.179 | ||
14 | 0.283 | ||
15 | 0.179 | ||
16 | 0.019 | ||
30 | VGL2409 | 14 | 0.019 |
16 | 0.330 | ||
17 | 0.349 | ||
18 | 0.255 | ||
20 | 0.047 | ||
31 | VGL2918 | 12 | 0.066 |
13 | 0.594 | ||
14 | 0.123 | ||
15 | 0.009 | ||
16 | 0.075 | ||
18.3 | 0.028 | ||
19.3 | 0.019 | ||
22.3 | 0.085 | ||
32 | VGL3008 | 13 | 0.085 |
15 | 0.019 | ||
17 | 0.019 | ||
18 | 0.208 | ||
19 | 0.217 | ||
20 | 0.028 | ||
21 | 0.396 | ||
22 | 0.028 | ||
33 | VGL3235 | 13 | 0.538 |
14 | 0.113 | ||
15 | 0.113 | ||
16 | 0.009 | ||
17 | 0.009 | ||
18 | 0.123 | ||
19 | 0.094 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 53 | 6.455 | 3.800 | 0.735 | 0.696 | -0.054 | |
SE | 0.318 | 0.242 | 0.027 | 0.024 | 0.013 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 53 | 5.000 | 2.990 | 0.682 | 0.628 | -0.076 | |
SE | 0.404 | 0.336 | 0.063 | 0.049 | 0.034 |
Standard genetic assessment for individual STR loci
Havana Silk
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 53 | 8 | 5.568 | 0.811 | 0.820 | 0.011 |
2 | AHT137 | 53 | 7 | 3.999 | 0.906 | 0.750 | -0.208 |
3 | AHTH130 | 53 | 6 | 4.590 | 0.792 | 0.782 | -0.013 |
4 | AHTh171-A | 53 | 7 | 4.122 | 0.717 | 0.757 | 0.053 |
5 | AHTh260 | 53 | 6 | 3.674 | 0.774 | 0.728 | -0.063 |
6 | AHTk211 | 53 | 4 | 2.955 | 0.755 | 0.662 | -0.141 |
7 | AHTk253 | 53 | 4 | 2.532 | 0.566 | 0.605 | 0.064 |
8 | C22.279 | 53 | 6 | 4.199 | 0.830 | 0.762 | -0.090 |
9 | FH2001 | 53 | 5 | 1.777 | 0.453 | 0.437 | -0.036 |
10 | FH2054 | 53 | 7 | 4.021 | 0.906 | 0.751 | -0.205 |
11 | FH2848 | 53 | 5 | 3.866 | 0.811 | 0.741 | -0.094 |
12 | INRA21 | 53 | 6 | 3.214 | 0.698 | 0.689 | -0.013 |
13 | INU005 | 53 | 5 | 1.918 | 0.528 | 0.479 | -0.104 |
14 | INU030 | 53 | 4 | 2.165 | 0.604 | 0.538 | -0.122 |
15 | INU055 | 53 | 5 | 3.817 | 0.811 | 0.738 | -0.099 |
16 | LEI004 | 53 | 4 | 1.190 | 0.151 | 0.160 | 0.055 |
17 | REN105L03 | 53 | 6 | 3.662 | 0.811 | 0.727 | -0.116 |
18 | REN162C04 | 53 | 5 | 3.062 | 0.679 | 0.673 | -0.009 |
19 | REN169D01 | 53 | 7 | 4.180 | 0.849 | 0.761 | -0.116 |
20 | REN169O18 | 53 | 6 | 2.431 | 0.547 | 0.589 | 0.070 |
21 | REN247M23 | 53 | 6 | 4.205 | 0.849 | 0.762 | -0.114 |
22 | REN54P11 | 53 | 6 | 5.727 | 0.811 | 0.825 | 0.017 |
23 | REN64E19 | 53 | 7 | 4.095 | 0.792 | 0.756 | -0.049 |
24 | VGL0760 | 53 | 9 | 5.057 | 0.849 | 0.802 | -0.058 |
25 | VGL0910 | 53 | 10 | 4.932 | 0.792 | 0.797 | 0.006 |
26 | VGL1063 | 53 | 12 | 8.737 | 0.943 | 0.886 | -0.065 |
27 | VGL1165 | 53 | 10 | 5.470 | 0.887 | 0.817 | -0.085 |
28 | VGL1828 | 53 | 6 | 3.142 | 0.755 | 0.682 | -0.107 |
29 | VGL2009 | 53 | 6 | 4.302 | 0.811 | 0.768 | -0.057 |
30 | VGL2409 | 53 | 5 | 3.352 | 0.736 | 0.702 | -0.049 |
31 | VGL2918 | 53 | 8 | 2.585 | 0.698 | 0.613 | -0.138 |
32 | VGL3008 | 53 | 8 | 3.896 | 0.660 | 0.743 | 0.112 |
33 | VGL3235 | 53 | 7 | 2.951 | 0.679 | 0.661 | -0.027 |
Standard genetic assessment for 7 STRs in the DLA region
Havana Silk
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 53 | 5 | 3.920 | 0.887 | 0.745 | -0.190 |
2 | DLA I-4ACA | 53 | 6 | 3.996 | 0.830 | 0.750 | -0.107 |
3 | DLA I-4BCT | 53 | 6 | 2.377 | 0.642 | 0.579 | -0.107 |
4 | DLA1131 | 53 | 6 | 3.918 | 0.736 | 0.745 | 0.012 |
5 | 5ACA | 53 | 5 | 2.559 | 0.604 | 0.609 | 0.009 |
6 | 5ACT | 53 | 4 | 1.550 | 0.340 | 0.355 | 0.043 |
7 | 5BCA | 53 | 3 | 2.608 | 0.736 | 0.617 | -0.193 |