Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Feb 22, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=303)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.007
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.373
1068	380 373 287 181	0.257
1152	390 373 281 180	0.007
1165	392 369 281 182	0.215
1166	388 379 277 184	0.041
1167	397 381 277 184	0.084
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=303)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.373
2022	339 327 282	0.048
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.348
2080	339 325 276	0.215

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=303)
1	AHT121	88	0.002
		92	0.005
		94	0.007
		98	0.158
		102	0.624
		104	0.097
		106	0.007
		108	0.101
2	AHT137	131	0.200
		137	0.771
		139	0.007
		141	0.003
		145	0.005
		147	0.007
		153	0.008
3	AHTH130	119	0.002
		123	0.168
		125	0.018
		127	0.688
		129	0.012
		131	0.112
4	AHTh171-A	219	0.099
		223	0.342
		225	0.208
		229	0.008
		233	0.338
		235	0.005
5	AHTh260	238	0.074
		242	0.759
		246	0.091
		250	0.008
		252	0.068
6	AHTk211	87	0.129
		89	0.221
		91	0.083
		95	0.564
		97	0.003
7	AHTk253	288	0.871
7	AHTk253	292	0.129
8	C22.279	116	0.706
		118	0.012
		120	0.010
		124	0.050
		126	0.218
		134	0.005
9	FH2001	124	0.122
		132	0.254
		140	0.012
		144	0.389
		148	0.221
		152	0.002
10	FH2054	148	0.053
		152	0.175
		156	0.292
		160	0.036
		164	0.094
		168	0.257
		172	0.002
		176	0.091
11	FH2848	234	0.002
		236	0.017
		238	0.492
		240	0.413
		242	0.076
		244	0.002
12	INRA21	91	0.002
		93	0.020
		95	0.079
		97	0.043
		99	0.219
		101	0.637
13	INU005	110	0.017
		122	0.013
		124	0.338
		126	0.632
14	INU030	144	0.017
		146	0.064
		148	0.069
		150	0.629
		152	0.221
15	INU055	210	0.490
		212	0.003
		214	0.036
		218	0.444
		220	0.026
16	LEI004	85	0.574
16	LEI004	95	0.426
17	REN105L03	227	0.041
		231	0.145
		233	0.111
		235	0.277
		241	0.426
18	REN162C04	200	0.109
		204	0.046
		206	0.597
		208	0.013
		212	0.234
19	REN169D01	202	0.010
		208	0.003
		212	0.226
		214	0.005
		216	0.744
		218	0.012
20	REN169O18	136	0.005
		162	0.375
		164	0.125
		166	0.215
		168	0.279
		174	0.002
21	REN247M23	268	0.389
		270	0.102
		272	0.142
		274	0.005
		278	0.361
22	REN54P11	226	0.540
		232	0.007
		234	0.454
23	REN64E19	139	0.116
		143	0.005
		147	0.013
		151	0.233
		153	0.107
		155	0.526
24	VGL0760	12	0.021
		13	0.056
		15	0.005
		18.2	0.030
		19.2	0.282
		20.2	0.137
		21.2	0.167
		22.2	0.272
		23.2	0.030
25	VGL0910	13	0.007
		17.1	0.152
		18.1	0.002
		19.1	0.058
		20.1	0.444
		21.1	0.322
		22.1	0.015
		24.1	0.002
26	VGL1063	10	0.119
		12	0.795
		13	0.007
		14	0.068
		15	0.012
27	VGL1165	14	0.010
		15	0.134
		16	0.035
		17	0.147
		19	0.008
		22	0.106
		25	0.307
		26	0.048
		27	0.002
		28	0.205
28	VGL1828	17	0.008
		19	0.975
		21	0.017
29	VGL2009	9	0.013
		10	0.010
		11	0.776
		12	0.101
		13	0.007
		14	0.094
30	VGL2409	14	0.013
		15	0.649
		16	0.180
		17	0.050
		18	0.107
		19	0.002
31	VGL2918	13	0.046
		14	0.175
		18.3	0.002
		19.3	0.107
		20.3	0.256
		21.3	0.383
		22.3	0.031
32	VGL3008	10	0.003
		14	0.041
		15	0.229
		16	0.109
		17	0.236
		18	0.068
		19	0.005
		20	0.107
		21	0.198
		22	0.003
33	VGL3235	12	0.015
		14	0.512
		15	0.188
		16	0.271
		17	0.015

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	303	5.818	2.693	0.579	0.562	-0.031
	SE		0.328	0.202	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	303	5.286	2.667	0.611	0.589	-0.035
	SE		0.596	0.291	0.051	0.048	0.004

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	303	8	2.305	0.561	0.566	0.009
2	AHT137	303	7	1.577	0.373	0.366	-0.019
3	AHTH130	303	6	1.942	0.518	0.485	-0.068
4	AHTh171-A	303	6	3.518	0.759	0.716	-0.061
5	AHTh260	303	5	1.682	0.432	0.405	-0.066
6	AHTk211	303	5	2.559	0.604	0.609	0.009
7	AHTk253	303	2	1.289	0.244	0.224	-0.089
8	C22.279	303	6	1.822	0.482	0.451	-0.068
9	FH2001	303	6	3.569	0.736	0.720	-0.022
10	FH2054	303	8	4.917	0.795	0.797	0.002
11	FH2848	303	6	2.392	0.597	0.582	-0.026
12	INRA21	303	6	2.163	0.538	0.538	-0.001
13	INU005	303	4	1.944	0.551	0.486	-0.135
14	INU030	303	5	2.206	0.502	0.547	0.082
15	INU055	303	5	2.277	0.617	0.561	-0.101
16	LEI004	303	2	1.957	0.475	0.489	0.028
17	REN105L03	303	5	3.412	0.736	0.707	-0.041
18	REN162C04	303	5	2.348	0.597	0.574	-0.041
19	REN169D01	303	6	1.652	0.409	0.395	-0.037
20	REN169O18	303	6	3.573	0.736	0.720	-0.022
21	REN247M23	303	5	3.196	0.743	0.687	-0.081
22	REN54P11	303	3	2.011	0.554	0.503	-0.103
23	REN64E19	303	6	2.807	0.683	0.644	-0.061
24	VGL0760	303	9	4.862	0.842	0.794	-0.060
25	VGL0910	303	8	3.056	0.680	0.673	-0.011
26	VGL1063	303	5	1.535	0.333	0.349	0.044
27	VGL1165	303	10	5.254	0.822	0.810	-0.015
28	VGL1828	303	3	1.051	0.050	0.049	-0.020
29	VGL2009	303	6	1.611	0.389	0.379	-0.027
30	VGL2409	303	6	2.141	0.548	0.533	-0.028
31	VGL2918	303	7	3.888	0.756	0.743	-0.017
32	VGL3008	303	10	5.643	0.848	0.823	-0.031
33	VGL3235	303	5	2.697	0.594	0.629	0.056

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	303	8	2.190	0.561	0.543	-0.033
2	DLA I-4ACA	303	7	3.693	0.752	0.729	-0.032
3	DLA I-4BCT	303	4	3.563	0.749	0.719	-0.042
4	DLA1131	303	6	2.687	0.647	0.628	-0.030
5	5ACA	303	4	1.651	0.403	0.394	-0.021
6	5ACT	303	4	3.131	0.719	0.681	-0.057
7	5BCA	303	4	1.755	0.442	0.430	-0.028

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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