Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Oct 24, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=336)
1001	380 373 281 182	0.012
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.001
1052	380 372 289 184	0.357
1068	380 373 287 181	0.262
1152	390 373 281 180	0.009
1165	392 369 281 182	0.210
1166	388 379 277 184	0.037
1167	397 381 277 184	0.094
1172	390 369 289 188	0.009

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=336)
2001	343 324 284	0.012
2003	343 324 282	0.009
2017	343 322 280	0.357
2022	339 327 282	0.043
2026	351 324 284	0.003
2039	345 327 276	0.001
2053	343 324 280	0.365
2080	339 325 276	0.210

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=336)
1	AHT121	88	0.001
		92	0.006
		94	0.007
		98	0.165
		102	0.607
		104	0.097
		106	0.007
		108	0.109
2	AHT137	131	0.211
		137	0.757
		139	0.006
		141	0.004
		145	0.004
		147	0.006
		153	0.010
3	AHTH130	119	0.001
		123	0.173
		125	0.016
		127	0.690
		129	0.013
		131	0.106
4	AHTh171-A	219	0.095
		223	0.333
		225	0.225
		229	0.007
		233	0.335
		235	0.004
5	AHTh260	238	0.070
		242	0.766
		246	0.089
		250	0.009
		252	0.065
6	AHTk211	87	0.126
		89	0.217
		91	0.089
		95	0.564
		97	0.003
7	AHTk253	288	0.878
7	AHTk253	292	0.122
8	C22.279	116	0.699
		118	0.010
		120	0.010
		124	0.058
		126	0.214
		134	0.007
9	FH2001	124	0.124
		132	0.249
		140	0.013
		144	0.376
		148	0.237
		152	0.001
10	FH2054	148	0.049
		152	0.183
		156	0.281
		160	0.037
		164	0.095
		168	0.249
		172	0.001
		176	0.104
11	FH2848	234	0.004
		236	0.024
		238	0.484
		240	0.399
		242	0.088
		244	0.001
12	INRA21	91	0.001
		93	0.019
		95	0.079
		97	0.043
		99	0.211
		101	0.646
13	INU005	110	0.015
		122	0.015
		124	0.333
		126	0.637
14	INU030	144	0.019
		146	0.063
		148	0.067
		150	0.637
		152	0.214
15	INU055	210	0.487
		212	0.007
		214	0.036
		218	0.442
		220	0.028
16	LEI004	85	0.573
16	LEI004	95	0.427
17	REN105L03	227	0.042
		231	0.150
		233	0.122
		235	0.274
		241	0.412
18	REN162C04	200	0.109
		204	0.048
		206	0.595
		208	0.012
		212	0.237
19	REN169D01	202	0.012
		208	0.003
		212	0.219
		214	0.004
		216	0.749
		218	0.013
20	REN169O18	136	0.004
		162	0.390
		164	0.124
		166	0.208
		168	0.272
		174	0.001
21	REN247M23	268	0.366
		270	0.112
		272	0.144
		274	0.004
		278	0.374
22	REN54P11	226	0.552
		232	0.009
		234	0.439
23	REN64E19	139	0.109
		143	0.007
		147	0.021
		151	0.229
		153	0.110
		155	0.524
24	VGL0760	12	0.019
		13	0.063
		15	0.004
		18.2	0.027
		19.2	0.281
		20.2	0.141
		21.2	0.161
		22.2	0.275
		23.2	0.028
25	VGL0910	13	0.006
		17.1	0.144
		18.1	0.001
		19.1	0.060
		20.1	0.440
		21.1	0.330
		22.1	0.013
		24.1	0.004
26	VGL1063	10	0.119
		12	0.798
		13	0.006
		14	0.061
		15	0.016
27	VGL1165	14	0.010
		15	0.135
		16	0.031
		17	0.168
		19	0.010
		22	0.098
		25	0.296
		26	0.054
		27	0.001
		28	0.195
28	VGL1828	17	0.007
		19	0.966
		21	0.027
29	VGL2009	9	0.015
		10	0.010
		11	0.771
		12	0.106
		13	0.012
		14	0.086
30	VGL2409	14	0.013
		15	0.650
		16	0.174
		17	0.051
		18	0.103
		19	0.009
31	VGL2918	13	0.051
		14	0.186
		18.3	0.001
		19.3	0.103
		20.3	0.254
		21.3	0.376
		22.3	0.028
32	VGL3008	10	0.003
		14	0.039
		15	0.213
		16	0.115
		17	0.247
		18	0.071
		19	0.004
		20	0.113
		21	0.192
		22	0.003
33	VGL3235	12	0.016
		14	0.504
		15	0.192
		16	0.268
		17	0.019

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	336	5.818	2.717	0.581	0.565	-0.029
	SE		0.328	0.205	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	336	5.286	2.683	0.614	0.590	-0.039
	SE		0.596	0.299	0.052	0.049	0.005

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	336	8	2.397	0.563	0.583	0.035
2	AHT137	336	7	1.617	0.378	0.381	0.009
3	AHTH130	336	6	1.930	0.521	0.482	-0.081
4	AHTh171-A	336	6	3.535	0.759	0.717	-0.058
5	AHTh260	336	5	1.654	0.420	0.395	-0.061
6	AHTk211	336	5	2.569	0.607	0.611	0.006
7	AHTk253	336	2	1.273	0.232	0.214	-0.083
8	C22.279	336	6	1.856	0.497	0.461	-0.078
9	FH2001	336	6	3.637	0.732	0.725	-0.010
10	FH2054	336	8	5.048	0.813	0.802	-0.013
11	FH2848	336	6	2.492	0.607	0.599	-0.014
12	INRA21	336	6	2.127	0.530	0.530	0.000
13	INU005	336	4	1.933	0.542	0.483	-0.122
14	INU030	336	5	2.172	0.500	0.540	0.074
15	INU055	336	5	2.303	0.643	0.566	-0.136
16	LEI004	336	2	1.958	0.467	0.489	0.045
17	REN105L03	336	5	3.520	0.738	0.716	-0.031
18	REN162C04	336	5	2.356	0.595	0.575	-0.034
19	REN169D01	336	6	1.643	0.396	0.392	-0.011
20	REN169O18	336	6	3.511	0.720	0.715	-0.007
21	REN247M23	336	5	3.259	0.741	0.693	-0.069
22	REN54P11	336	3	2.010	0.548	0.502	-0.090
23	REN64E19	336	6	2.846	0.693	0.649	-0.069
24	VGL0760	336	9	4.842	0.833	0.793	-0.050
25	VGL0910	336	8	3.051	0.690	0.672	-0.027
26	VGL1063	336	5	1.528	0.336	0.346	0.027
27	VGL1165	336	10	5.376	0.818	0.814	-0.005
28	VGL1828	336	3	1.071	0.068	0.067	-0.029
29	VGL2009	336	6	1.631	0.399	0.387	-0.031
30	VGL2409	336	6	2.143	0.554	0.533	-0.038
31	VGL2918	336	7	3.922	0.771	0.745	-0.035
32	VGL3008	336	10	5.691	0.842	0.824	-0.022
33	VGL3235	336	5	2.749	0.607	0.636	0.046

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	336	8	2.209	0.568	0.547	-0.039
2	DLA I-4ACA	336	7	3.742	0.759	0.733	-0.036
3	DLA I-4BCT	336	4	3.626	0.762	0.724	-0.052
4	DLA1131	336	6	2.740	0.667	0.635	-0.050
5	5ACA	336	4	1.625	0.390	0.385	-0.014
6	5ACT	336	4	3.082	0.708	0.676	-0.048
7	5BCA	336	4	1.759	0.446	0.432	-0.035

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Connect with us on social media