Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Jun 14, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=308)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.372
1068	380 373 287 181	0.260
1152	390 373 281 180	0.010
1165	392 369 281 182	0.211
1166	388 379 277 184	0.041
1167	397 381 277 184	0.084
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=308)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.372
2022	339 327 282	0.047
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.354
2080	339 325 276	0.211

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=308)
1	AHT121	88	0.002
		92	0.005
		94	0.008
		98	0.157
		102	0.625
		104	0.096
		106	0.008
		108	0.099
2	AHT137	131	0.198
		137	0.769
		139	0.006
		141	0.003
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.167
		125	0.018
		127	0.687
		129	0.015
		131	0.112
4	AHTh171-A	219	0.101
		223	0.341
		225	0.209
		229	0.008
		233	0.336
		235	0.005
5	AHTh260	238	0.073
		242	0.758
		246	0.091
		250	0.010
		252	0.068
6	AHTk211	87	0.130
		89	0.226
		91	0.084
		95	0.557
		97	0.003
7	AHTk253	288	0.869
7	AHTk253	292	0.131
8	C22.279	116	0.706
		118	0.011
		120	0.010
		124	0.049
		126	0.216
		134	0.008
9	FH2001	124	0.123
		132	0.253
		140	0.011
		144	0.388
		148	0.222
		152	0.002
10	FH2054	148	0.052
		152	0.179
		156	0.287
		160	0.036
		164	0.094
		168	0.256
		172	0.002
		176	0.094
11	FH2848	234	0.005
		236	0.016
		238	0.490
		240	0.412
		242	0.075
		244	0.002
12	INRA21	91	0.002
		93	0.019
		95	0.081
		97	0.042
		99	0.218
		101	0.638
13	INU005	110	0.016
		122	0.016
		124	0.338
		126	0.630
14	INU030	144	0.019
		146	0.063
		148	0.070
		150	0.627
		152	0.221
15	INU055	210	0.490
		212	0.003
		214	0.036
		218	0.445
		220	0.026
16	LEI004	85	0.571
16	LEI004	95	0.429
17	REN105L03	227	0.042
		231	0.146
		233	0.110
		235	0.278
		241	0.424
18	REN162C04	200	0.110
		204	0.049
		206	0.593
		208	0.013
		212	0.235
19	REN169D01	202	0.013
		208	0.003
		212	0.226
		214	0.005
		216	0.742
		218	0.011
20	REN169O18	136	0.005
		162	0.373
		164	0.127
		166	0.216
		168	0.278
		174	0.002
21	REN247M23	268	0.391
		270	0.102
		272	0.143
		274	0.005
		278	0.359
22	REN54P11	226	0.537
		232	0.010
		234	0.453
23	REN64E19	139	0.115
		143	0.008
		147	0.013
		151	0.234
		153	0.110
		155	0.519
24	VGL0760	12	0.021
		13	0.058
		15	0.005
		18.2	0.029
		19.2	0.281
		20.2	0.136
		21.2	0.166
		22.2	0.274
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.149
		18.1	0.002
		19.1	0.058
		20.1	0.443
		21.1	0.321
		22.1	0.015
		24.1	0.005
26	VGL1063	10	0.119
		12	0.795
		13	0.006
		14	0.067
		15	0.013
27	VGL1165	14	0.011
		15	0.133
		16	0.034
		17	0.148
		19	0.010
		22	0.106
		25	0.307
		26	0.049
		27	0.002
		28	0.201
28	VGL1828	17	0.008
		19	0.972
		21	0.019
29	VGL2009	9	0.016
		10	0.010
		11	0.776
		12	0.099
		13	0.006
		14	0.093
30	VGL2409	14	0.013
		15	0.646
		16	0.180
		17	0.050
		18	0.109
		19	0.002
31	VGL2918	13	0.045
		14	0.179
		18.3	0.002
		19.3	0.107
		20.3	0.256
		21.3	0.380
		22.3	0.031
32	VGL3008	10	0.003
		14	0.041
		15	0.227
		16	0.110
		17	0.234
		18	0.070
		19	0.005
		20	0.110
		21	0.196
		22	0.003
33	VGL3235	12	0.018
		14	0.506
		15	0.188
		16	0.273
		17	0.015

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	308	5.818	2.705	0.582	0.564	-0.032
	SE		0.328	0.203	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	308	5.286	2.663	0.609	0.588	-0.034
	SE		0.596	0.292	0.052	0.048	0.005

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	308	8	2.301	0.562	0.565	0.007
2	AHT137	308	7	1.583	0.377	0.368	-0.022
3	AHTH130	308	6	1.951	0.523	0.487	-0.072
4	AHTh171-A	308	6	3.531	0.760	0.717	-0.060
5	AHTh260	308	5	1.686	0.435	0.407	-0.069
6	AHTk211	308	5	2.598	0.604	0.615	0.018
7	AHTk253	308	2	1.296	0.250	0.228	-0.095
8	C22.279	308	6	1.825	0.484	0.452	-0.070
9	FH2001	308	6	3.578	0.740	0.721	-0.027
10	FH2054	308	8	4.952	0.799	0.798	-0.001
11	FH2848	308	6	2.402	0.601	0.584	-0.029
12	INRA21	308	6	2.159	0.539	0.537	-0.004
13	INU005	308	4	1.956	0.552	0.489	-0.129
14	INU030	308	5	2.219	0.503	0.549	0.084
15	INU055	308	5	2.272	0.623	0.560	-0.114
16	LEI004	308	2	1.960	0.481	0.490	0.019
17	REN105L03	308	5	3.426	0.740	0.708	-0.045
18	REN162C04	308	5	2.374	0.601	0.579	-0.038
19	REN169D01	308	6	1.662	0.412	0.398	-0.035
20	REN169O18	308	6	3.582	0.734	0.721	-0.018
21	REN247M23	308	5	3.198	0.744	0.687	-0.082
22	REN54P11	308	3	2.024	0.558	0.506	-0.104
23	REN64E19	308	6	2.855	0.688	0.650	-0.059
24	VGL0760	308	9	4.860	0.844	0.794	-0.063
25	VGL0910	308	8	3.070	0.679	0.674	-0.006
26	VGL1063	308	5	1.535	0.334	0.349	0.041
27	VGL1165	308	10	5.288	0.825	0.811	-0.017
28	VGL1828	308	3	1.057	0.055	0.054	-0.022
29	VGL2009	308	6	1.611	0.390	0.379	-0.028
30	VGL2409	308	6	2.153	0.552	0.536	-0.031
31	VGL2918	308	7	3.899	0.760	0.744	-0.022
32	VGL3008	308	10	5.688	0.851	0.824	-0.032
33	VGL3235	308	5	2.725	0.597	0.633	0.056

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	308	8	2.190	0.562	0.543	-0.034
2	DLA I-4ACA	308	7	3.687	0.750	0.729	-0.029
3	DLA I-4BCT	308	4	3.564	0.753	0.719	-0.047
4	DLA1131	308	6	2.702	0.649	0.630	-0.031
5	5ACA	308	4	1.640	0.396	0.390	-0.015
6	5ACT	308	4	3.116	0.718	0.679	-0.057
7	5BCA	308	4	1.739	0.435	0.425	-0.023

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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