Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Jul 31, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=310)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.374
1068	380 373 287 181	0.258
1152	390 373 281 180	0.010
1165	392 369 281 182	0.210
1166	388 379 277 184	0.040
1167	397 381 277 184	0.085
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=310)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.374
2022	339 327 282	0.047
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.353
2080	339 325 276	0.210

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=310)
1	AHT121	88	0.002
		92	0.005
		94	0.008
		98	0.158
		102	0.626
		104	0.095
		106	0.008
		108	0.098
2	AHT137	131	0.200
		137	0.768
		139	0.006
		141	0.003
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.169
		125	0.018
		127	0.685
		129	0.015
		131	0.111
4	AHTh171-A	219	0.102
		223	0.340
		225	0.211
		229	0.008
		233	0.334
		235	0.005
5	AHTh260	238	0.073
		242	0.760
		246	0.090
		250	0.010
		252	0.068
6	AHTk211	87	0.129
		89	0.224
		91	0.087
		95	0.556
		97	0.003
7	AHTk253	288	0.869
7	AHTk253	292	0.131
8	C22.279	116	0.703
		118	0.011
		120	0.010
		124	0.048
		126	0.219
		134	0.008
9	FH2001	124	0.124
		132	0.252
		140	0.011
		144	0.387
		148	0.224
		152	0.002
10	FH2054	148	0.052
		152	0.177
		156	0.285
		160	0.035
		164	0.095
		168	0.258
		172	0.002
		176	0.095
11	FH2848	234	0.005
		236	0.016
		238	0.492
		240	0.410
		242	0.076
		244	0.002
12	INRA21	91	0.002
		93	0.019
		95	0.081
		97	0.042
		99	0.216
		101	0.640
13	INU005	110	0.016
		122	0.016
		124	0.335
		126	0.632
14	INU030	144	0.019
		146	0.063
		148	0.069
		150	0.629
		152	0.219
15	INU055	210	0.490
		212	0.003
		214	0.035
		218	0.445
		220	0.026
16	LEI004	85	0.569
16	LEI004	95	0.431
17	REN105L03	227	0.042
		231	0.145
		233	0.113
		235	0.277
		241	0.423
18	REN162C04	200	0.111
		204	0.048
		206	0.592
		208	0.013
		212	0.235
19	REN169D01	202	0.013
		208	0.003
		212	0.226
		214	0.005
		216	0.742
		218	0.011
20	REN169O18	136	0.005
		162	0.374
		164	0.126
		166	0.216
		168	0.277
		174	0.002
21	REN247M23	268	0.389
		270	0.103
		272	0.145
		274	0.005
		278	0.358
22	REN54P11	226	0.535
		232	0.010
		234	0.455
23	REN64E19	139	0.115
		143	0.008
		147	0.013
		151	0.235
		153	0.113
		155	0.516
24	VGL0760	12	0.021
		13	0.058
		15	0.005
		18.2	0.029
		19.2	0.284
		20.2	0.135
		21.2	0.165
		22.2	0.274
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.150
		18.1	0.002
		19.1	0.058
		20.1	0.442
		21.1	0.323
		22.1	0.015
		24.1	0.005
26	VGL1063	10	0.118
		12	0.797
		13	0.006
		14	0.066
		15	0.013
27	VGL1165	14	0.011
		15	0.135
		16	0.034
		17	0.148
		19	0.010
		22	0.105
		25	0.306
		26	0.048
		27	0.002
		28	0.200
28	VGL1828	17	0.008
		19	0.973
		21	0.019
29	VGL2009	9	0.016
		10	0.010
		11	0.777
		12	0.098
		13	0.006
		14	0.092
30	VGL2409	14	0.013
		15	0.647
		16	0.181
		17	0.050
		18	0.108
		19	0.002
31	VGL2918	13	0.045
		14	0.179
		18.3	0.002
		19.3	0.106
		20.3	0.255
		21.3	0.382
		22.3	0.031
32	VGL3008	10	0.003
		14	0.040
		15	0.227
		16	0.110
		17	0.232
		18	0.071
		19	0.005
		20	0.111
		21	0.197
		22	0.003
33	VGL3235	12	0.018
		14	0.508
		15	0.189
		16	0.271
		17	0.015

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	310	5.818	2.706	0.582	0.564	-0.033
	SE		0.328	0.203	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	310	5.286	2.657	0.607	0.587	-0.032
	SE		0.596	0.292	0.052	0.049	0.005

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	310	8	2.296	0.561	0.564	0.006
2	AHT137	310	7	1.588	0.381	0.370	-0.028
3	AHTH130	310	6	1.955	0.526	0.489	-0.076
4	AHTh171-A	310	6	3.542	0.761	0.718	-0.061
5	AHTh260	310	5	1.680	0.432	0.405	-0.068
6	AHTk211	310	5	2.603	0.606	0.616	0.015
7	AHTk253	310	2	1.294	0.248	0.227	-0.093
8	C22.279	310	6	1.834	0.484	0.455	-0.064
9	FH2001	310	6	3.585	0.742	0.721	-0.029
10	FH2054	310	8	4.960	0.800	0.798	-0.002
11	FH2848	310	6	2.405	0.600	0.584	-0.027
12	INRA21	310	6	2.149	0.535	0.535	-0.002
13	INU005	310	4	1.950	0.548	0.487	-0.126
14	INU030	310	5	2.208	0.500	0.547	0.086
15	INU055	310	5	2.270	0.626	0.559	-0.119
16	LEI004	310	2	1.962	0.481	0.490	0.020
17	REN105L03	310	5	3.435	0.742	0.709	-0.047
18	REN162C04	310	5	2.377	0.603	0.579	-0.041
19	REN169D01	310	6	1.662	0.413	0.398	-0.037
20	REN169O18	310	6	3.577	0.735	0.720	-0.021
21	REN247M23	310	5	3.215	0.745	0.689	-0.082
22	REN54P11	310	3	2.025	0.558	0.506	-0.102
23	REN64E19	310	6	2.874	0.690	0.652	-0.059
24	VGL0760	310	9	4.838	0.842	0.793	-0.061
25	VGL0910	310	8	3.072	0.681	0.674	-0.009
26	VGL1063	310	5	1.531	0.332	0.347	0.042
27	VGL1165	310	10	5.291	0.826	0.811	-0.018
28	VGL1828	310	3	1.057	0.055	0.054	-0.022
29	VGL2009	310	6	1.605	0.387	0.377	-0.027
30	VGL2409	310	6	2.149	0.552	0.535	-0.032
31	VGL2918	310	7	3.885	0.758	0.743	-0.021
32	VGL3008	310	10	5.698	0.852	0.824	-0.033
33	VGL3235	310	5	2.720	0.597	0.632	0.056

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	310	8	2.188	0.561	0.543	-0.034
2	DLA I-4ACA	310	7	3.682	0.748	0.728	-0.027
3	DLA I-4BCT	310	4	3.558	0.752	0.719	-0.045
4	DLA1131	310	6	2.689	0.645	0.628	-0.027
5	5ACA	310	4	1.635	0.394	0.389	-0.013
6	5ACT	310	4	3.110	0.716	0.678	-0.056
7	5BCA	310	4	1.734	0.432	0.423	-0.021

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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