Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Sep 12, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=326)
1001	380 373 281 182	0.005
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.367
1068	380 373 287 181	0.267
1152	390 373 281 180	0.009
1165	392 369 281 182	0.210
1166	388 379 277 184	0.038
1167	397 381 277 184	0.086
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=326)
2001	343 324 284	0.005
2003	343 324 282	0.008
2017	343 322 280	0.367
2022	339 327 282	0.044
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.362
2080	339 325 276	0.210

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=327)
1	AHT121	88	0.002
		92	0.006
		94	0.008
		98	0.159
		102	0.615
		104	0.098
		106	0.008
		108	0.106
2	AHT137	131	0.199
		137	0.769
		139	0.006
		141	0.005
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.168
		125	0.017
		127	0.691
		129	0.014
		131	0.109
4	AHTh171-A	219	0.098
		223	0.342
		225	0.218
		229	0.008
		233	0.330
		235	0.005
5	AHTh260	238	0.072
		242	0.763
		246	0.089
		250	0.009
		252	0.067
6	AHTk211	87	0.130
		89	0.223
		91	0.084
		95	0.560
		97	0.003
7	AHTk253	288	0.875
7	AHTk253	292	0.125
8	C22.279	116	0.705
		118	0.011
		120	0.011
		124	0.047
		126	0.219
		134	0.008
9	FH2001	124	0.125
		132	0.249
		140	0.012
		144	0.387
		148	0.225
		152	0.002
10	FH2054	148	0.050
		152	0.183
		156	0.278
		160	0.037
		164	0.096
		168	0.255
		172	0.002
		176	0.098
11	FH2848	234	0.005
		236	0.017
		238	0.489
		240	0.405
		242	0.083
		244	0.002
12	INRA21	91	0.002
		93	0.020
		95	0.081
		97	0.044
		99	0.216
		101	0.638
13	INU005	110	0.015
		122	0.015
		124	0.336
		126	0.633
14	INU030	144	0.020
		146	0.063
		148	0.069
		150	0.633
		152	0.216
15	INU055	210	0.486
		212	0.003
		214	0.037
		218	0.445
		220	0.029
16	LEI004	85	0.564
16	LEI004	95	0.436
17	REN105L03	227	0.041
		231	0.144
		233	0.118
		235	0.274
		241	0.424
18	REN162C04	200	0.112
		204	0.049
		206	0.592
		208	0.012
		212	0.235
19	REN169D01	202	0.012
		208	0.003
		212	0.225
		214	0.005
		216	0.745
		218	0.011
20	REN169O18	136	0.005
		162	0.376
		164	0.124
		166	0.214
		168	0.280
		174	0.002
21	REN247M23	268	0.375
		270	0.109
		272	0.147
		274	0.005
		278	0.365
22	REN54P11	226	0.541
		232	0.009
		234	0.450
23	REN64E19	139	0.112
		143	0.008
		147	0.012
		151	0.234
		153	0.113
		155	0.521
24	VGL0760	12	0.020
		13	0.057
		15	0.005
		18.2	0.028
		19.2	0.289
		20.2	0.135
		21.2	0.161
		22.2	0.278
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.148
		18.1	0.002
		19.1	0.061
		20.1	0.440
		21.1	0.324
		22.1	0.014
		24.1	0.005
26	VGL1063	10	0.116
		12	0.798
		13	0.006
		14	0.063
		15	0.017
27	VGL1165	14	0.011
		15	0.138
		16	0.032
		17	0.156
		19	0.011
		22	0.101
		25	0.303
		26	0.047
		27	0.002
		28	0.200
28	VGL1828	17	0.008
		19	0.972
		21	0.020
29	VGL2009	9	0.015
		10	0.011
		11	0.777
		12	0.102
		13	0.006
		14	0.089
30	VGL2409	14	0.014
		15	0.648
		16	0.177
		17	0.052
		18	0.106
		19	0.003
31	VGL2918	13	0.044
		14	0.179
		18.3	0.002
		19.3	0.106
		20.3	0.257
		21.3	0.384
		22.3	0.029
32	VGL3008	10	0.003
		14	0.040
		15	0.219
		16	0.115
		17	0.235
		18	0.069
		19	0.005
		20	0.115
		21	0.197
		22	0.003
33	VGL3235	12	0.017
		14	0.509
		15	0.193
		16	0.268
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	326	5.818	2.705	0.580	0.563	-0.031
	SE		0.328	0.203	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	326	5.286	2.659	0.609	0.587	-0.035
	SE		0.596	0.295	0.053	0.049	0.006

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	326	8	2.359	0.557	0.576	0.034
2	AHT137	326	7	1.584	0.376	0.369	-0.020
3	AHTH130	326	6	1.930	0.517	0.482	-0.073
4	AHTh171-A	326	6	3.535	0.758	0.717	-0.057
5	AHTh260	326	5	1.667	0.425	0.400	-0.062
6	AHTk211	326	5	2.584	0.609	0.613	0.007
7	AHTk253	326	2	1.281	0.239	0.219	-0.088
8	C22.279	326	6	1.827	0.483	0.453	-0.067
9	FH2001	326	6	3.595	0.737	0.722	-0.021
10	FH2054	326	8	5.023	0.807	0.801	-0.008
11	FH2848	326	6	2.435	0.599	0.589	-0.017
12	INRA21	326	6	2.165	0.541	0.538	-0.006
13	INU005	326	4	1.944	0.544	0.486	-0.121
14	INU030	326	5	2.192	0.502	0.544	0.078
15	INU055	326	5	2.290	0.633	0.563	-0.124
16	LEI004	326	2	1.968	0.480	0.492	0.024
17	REN105L03	326	5	3.442	0.734	0.709	-0.034
18	REN162C04	326	5	2.377	0.596	0.579	-0.029
19	REN169D01	326	6	1.652	0.401	0.395	-0.015
20	REN169O18	326	6	3.559	0.734	0.719	-0.021
21	REN247M23	326	5	3.255	0.746	0.693	-0.077
22	REN54P11	326	3	2.020	0.560	0.505	-0.109
23	REN64E19	326	6	2.840	0.694	0.648	-0.071
24	VGL0760	326	9	4.761	0.832	0.790	-0.053
25	VGL0910	326	8	3.077	0.691	0.675	-0.024
26	VGL1063	326	5	1.527	0.333	0.345	0.034
27	VGL1165	326	10	5.298	0.823	0.811	-0.014
28	VGL1828	326	3	1.057	0.055	0.054	-0.022
29	VGL2009	326	6	1.607	0.385	0.378	-0.020
30	VGL2409	326	6	2.147	0.554	0.534	-0.036
31	VGL2918	326	7	3.858	0.765	0.741	-0.032
32	VGL3008	326	10	5.720	0.850	0.825	-0.030
33	VGL3235	326	5	2.714	0.596	0.632	0.056

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	326	8	2.172	0.558	0.540	-0.035
2	DLA I-4ACA	326	7	3.687	0.755	0.729	-0.035
3	DLA I-4BCT	326	4	3.576	0.758	0.720	-0.052
4	DLA1131	326	6	2.721	0.656	0.633	-0.038
5	5ACA	326	4	1.630	0.390	0.386	-0.008
6	5ACT	326	4	3.096	0.715	0.677	-0.056
7	5BCA	326	4	1.729	0.429	0.422	-0.018

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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