Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Jun 21, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=324)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.369
1068	380 373 287 181	0.269
1152	390 373 281 180	0.009
1165	392 369 281 182	0.208
1166	388 379 277 184	0.039
1167	397 381 277 184	0.085
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=324)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.369
2022	339 327 282	0.045
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.363
2080	339 325 276	0.208

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=325)
1	AHT121	88	0.002
		92	0.005
		94	0.008
		98	0.157
		102	0.617
		104	0.099
		106	0.008
		108	0.105
2	AHT137	131	0.195
		137	0.774
		139	0.006
		141	0.003
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.170
		125	0.017
		127	0.688
		129	0.014
		131	0.110
4	AHTh171-A	219	0.099
		223	0.344
		225	0.216
		229	0.008
		233	0.329
		235	0.005
5	AHTh260	238	0.072
		242	0.762
		246	0.089
		250	0.009
		252	0.068
6	AHTk211	87	0.131
		89	0.223
		91	0.083
		95	0.560
		97	0.003
7	AHTk253	288	0.873
7	AHTk253	292	0.127
8	C22.279	116	0.708
		118	0.011
		120	0.009
		124	0.046
		126	0.218
		134	0.008
9	FH2001	124	0.125
		132	0.252
		140	0.011
		144	0.388
		148	0.223
		152	0.002
10	FH2054	148	0.049
		152	0.186
		156	0.277
		160	0.037
		164	0.098
		168	0.255
		172	0.002
		176	0.095
11	FH2848	234	0.005
		236	0.015
		238	0.489
		240	0.407
		242	0.082
		244	0.002
12	INRA21	91	0.002
		93	0.020
		95	0.082
		97	0.045
		99	0.215
		101	0.637
13	INU005	110	0.015
		122	0.015
		124	0.338
		126	0.631
14	INU030	144	0.018
		146	0.065
		148	0.069
		150	0.631
		152	0.217
15	INU055	210	0.488
		212	0.003
		214	0.035
		218	0.445
		220	0.029
16	LEI004	85	0.563
16	LEI004	95	0.437
17	REN105L03	227	0.042
		231	0.144
		233	0.116
		235	0.275
		241	0.424
18	REN162C04	200	0.112
		204	0.049
		206	0.589
		208	0.012
		212	0.237
19	REN169D01	202	0.012
		208	0.003
		212	0.227
		214	0.005
		216	0.742
		218	0.011
20	REN169O18	136	0.005
		162	0.373
		164	0.125
		166	0.215
		168	0.281
		174	0.002
21	REN247M23	268	0.378
		270	0.106
		272	0.145
		274	0.005
		278	0.366
22	REN54P11	226	0.537
		232	0.009
		234	0.454
23	REN64E19	139	0.112
		143	0.008
		147	0.012
		151	0.235
		153	0.114
		155	0.518
24	VGL0760	12	0.020
		13	0.055
		15	0.005
		18.2	0.028
		19.2	0.288
		20.2	0.135
		21.2	0.160
		22.2	0.280
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.151
		18.1	0.002
		19.1	0.060
		20.1	0.440
		21.1	0.323
		22.1	0.014
		24.1	0.005
26	VGL1063	10	0.118
		12	0.794
		13	0.006
		14	0.063
		15	0.018
27	VGL1165	14	0.011
		15	0.137
		16	0.032
		17	0.154
		19	0.011
		22	0.102
		25	0.306
		26	0.046
		27	0.002
		28	0.200
28	VGL1828	17	0.008
		19	0.974
		21	0.018
29	VGL2009	9	0.015
		10	0.011
		11	0.775
		12	0.102
		13	0.006
		14	0.091
30	VGL2409	14	0.012
		15	0.652
		16	0.177
		17	0.051
		18	0.106
		19	0.002
31	VGL2918	13	0.045
		14	0.178
		18.3	0.002
		19.3	0.106
		20.3	0.258
		21.3	0.382
		22.3	0.029
32	VGL3008	10	0.003
		14	0.040
		15	0.220
		16	0.112
		17	0.235
		18	0.071
		19	0.005
		20	0.115
		21	0.195
		22	0.003
33	VGL3235	12	0.017
		14	0.511
		15	0.189
		16	0.269
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	325	5.818	2.705	0.580	0.564	-0.031
	SE		0.328	0.203	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	325	5.286	2.649	0.611	0.585	-0.041
	SE		0.596	0.294	0.054	0.049	0.006

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	325	8	2.343	0.556	0.573	0.031
2	AHT137	325	7	1.569	0.372	0.363	-0.026
3	AHTH130	325	6	1.942	0.522	0.485	-0.076
4	AHTh171-A	325	6	3.534	0.756	0.717	-0.055
5	AHTh260	325	5	1.673	0.428	0.402	-0.063
6	AHTk211	325	5	2.581	0.606	0.613	0.011
7	AHTk253	325	2	1.284	0.241	0.221	-0.089
8	C22.279	325	6	1.813	0.478	0.449	-0.067
9	FH2001	325	6	3.579	0.732	0.721	-0.016
10	FH2054	325	8	5.022	0.806	0.801	-0.007
11	FH2848	325	6	2.426	0.599	0.588	-0.019
12	INRA21	325	6	2.169	0.542	0.539	-0.005
13	INU005	325	4	1.950	0.542	0.487	-0.112
14	INU030	325	5	2.202	0.505	0.546	0.075
15	INU055	325	5	2.285	0.628	0.562	-0.116
16	LEI004	325	2	1.968	0.478	0.492	0.028
17	REN105L03	325	5	3.433	0.735	0.709	-0.036
18	REN162C04	325	5	2.389	0.600	0.581	-0.032
19	REN169D01	325	6	1.659	0.404	0.397	-0.018
20	REN169O18	325	6	3.571	0.735	0.720	-0.020
21	REN247M23	325	5	3.235	0.747	0.691	-0.081
22	REN54P11	325	3	2.023	0.565	0.506	-0.117
23	REN64E19	325	6	2.857	0.695	0.650	-0.070
24	VGL0760	325	9	4.757	0.834	0.790	-0.056
25	VGL0910	325	8	3.081	0.692	0.675	-0.025
26	VGL1063	325	5	1.542	0.338	0.351	0.037
27	VGL1165	325	10	5.267	0.818	0.810	-0.010
28	VGL1828	325	3	1.054	0.052	0.051	-0.021
29	VGL2009	325	6	1.612	0.388	0.380	-0.021
30	VGL2409	325	6	2.124	0.548	0.529	-0.035
31	VGL2918	325	7	3.871	0.766	0.742	-0.033
32	VGL3008	325	10	5.729	0.852	0.825	-0.033
33	VGL3235	325	5	2.705	0.597	0.630	0.053

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	325	8	2.162	0.559	0.537	-0.040
2	DLA I-4ACA	325	7	3.676	0.756	0.728	-0.039
3	DLA I-4BCT	325	4	3.560	0.760	0.719	-0.057
4	DLA1131	325	6	2.713	0.658	0.631	-0.043
5	5ACA	325	4	1.626	0.392	0.385	-0.018
6	5ACT	325	4	3.090	0.720	0.676	-0.065
7	5BCA	325	4	1.718	0.429	0.418	-0.026

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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