Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Oct 1, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=315)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.373
1068	380 373 287 181	0.262
1152	390 373 281 180	0.010
1165	392 369 281 182	0.208
1166	388 379 277 184	0.040
1167	397 381 277 184	0.086
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=315)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.373
2022	339 327 282	0.046
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.357
2080	339 325 276	0.208

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=315)
1	AHT121	88	0.002
		92	0.005
		94	0.008
		98	0.159
		102	0.624
		104	0.095
		106	0.008
		108	0.100
2	AHT137	131	0.198
		137	0.770
		139	0.006
		141	0.003
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.173
		125	0.017
		127	0.683
		129	0.014
		131	0.111
4	AHTh171-A	219	0.100
		223	0.341
		225	0.216
		229	0.008
		233	0.330
		235	0.005
5	AHTh260	238	0.071
		242	0.763
		246	0.089
		250	0.010
		252	0.067
6	AHTk211	87	0.129
		89	0.222
		91	0.086
		95	0.560
		97	0.003
7	AHTk253	288	0.871
7	AHTk253	292	0.129
8	C22.279	116	0.703
		118	0.011
		120	0.010
		124	0.048
		126	0.221
		134	0.008
9	FH2001	124	0.127
		132	0.252
		140	0.011
		144	0.386
		148	0.222
		152	0.002
10	FH2054	148	0.051
		152	0.181
		156	0.281
		160	0.038
		164	0.095
		168	0.257
		172	0.002
		176	0.095
11	FH2848	234	0.005
		236	0.016
		238	0.490
		240	0.410
		242	0.078
		244	0.002
12	INRA21	91	0.002
		93	0.019
		95	0.079
		97	0.043
		99	0.214
		101	0.643
13	INU005	110	0.016
		122	0.016
		124	0.335
		126	0.633
14	INU030	144	0.019
		146	0.065
		148	0.068
		150	0.630
		152	0.217
15	INU055	210	0.492
		212	0.003
		214	0.037
		218	0.443
		220	0.025
16	LEI004	85	0.565
16	LEI004	95	0.435
17	REN105L03	227	0.043
		231	0.144
		233	0.111
		235	0.278
		241	0.424
18	REN162C04	200	0.113
		204	0.048
		206	0.587
		208	0.013
		212	0.240
19	REN169D01	202	0.013
		208	0.003
		212	0.224
		214	0.005
		216	0.744
		218	0.011
20	REN169O18	136	0.005
		162	0.371
		164	0.127
		166	0.217
		168	0.278
		174	0.002
21	REN247M23	268	0.386
		270	0.103
		272	0.144
		274	0.005
		278	0.362
22	REN54P11	226	0.538
		232	0.010
		234	0.452
23	REN64E19	139	0.113
		143	0.008
		147	0.013
		151	0.235
		153	0.113
		155	0.519
24	VGL0760	12	0.021
		13	0.057
		15	0.005
		18.2	0.029
		19.2	0.283
		20.2	0.137
		21.2	0.162
		22.2	0.279
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.149
		18.1	0.002
		19.1	0.057
		20.1	0.444
		21.1	0.322
		22.1	0.014
		24.1	0.005
26	VGL1063	10	0.117
		12	0.797
		13	0.006
		14	0.065
		15	0.014
27	VGL1165	14	0.011
		15	0.135
		16	0.033
		17	0.152
		19	0.011
		22	0.105
		25	0.303
		26	0.048
		27	0.002
		28	0.200
28	VGL1828	17	0.008
		19	0.973
		21	0.019
29	VGL2009	9	0.016
		10	0.010
		11	0.779
		12	0.098
		13	0.006
		14	0.090
30	VGL2409	14	0.013
		15	0.648
		16	0.181
		17	0.051
		18	0.106
		19	0.002
31	VGL2918	13	0.044
		14	0.183
		18.3	0.002
		19.3	0.108
		20.3	0.256
		21.3	0.378
		22.3	0.030
32	VGL3008	10	0.003
		14	0.040
		15	0.224
		16	0.111
		17	0.235
		18	0.070
		19	0.005
		20	0.113
		21	0.197
		22	0.003
33	VGL3235	12	0.017
		14	0.506
		15	0.189
		16	0.273
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	315	5.818	2.706	0.581	0.563	-0.032
	SE		0.328	0.204	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	315	5.286	2.651	0.608	0.586	-0.035
	SE		0.596	0.293	0.053	0.049	0.006

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	315	8	2.307	0.562	0.566	0.008
2	AHT137	315	7	1.582	0.378	0.368	-0.027
3	AHTH130	315	6	1.966	0.530	0.491	-0.079
4	AHTh171-A	315	6	3.544	0.756	0.718	-0.053
5	AHTh260	315	5	1.665	0.425	0.400	-0.065
6	AHTk211	315	5	2.582	0.600	0.613	0.021
7	AHTk253	315	2	1.289	0.244	0.224	-0.091
8	C22.279	315	6	1.833	0.486	0.454	-0.069
9	FH2001	315	6	3.596	0.746	0.722	-0.033
10	FH2054	315	8	5.001	0.800	0.800	0.000
11	FH2848	315	6	2.412	0.603	0.585	-0.030
12	INRA21	315	6	2.138	0.533	0.532	-0.002
13	INU005	315	4	1.946	0.543	0.486	-0.117
14	INU030	315	5	2.204	0.502	0.546	0.082
15	INU055	315	5	2.272	0.629	0.560	-0.123
16	LEI004	315	2	1.967	0.476	0.492	0.031
17	REN105L03	315	5	3.427	0.740	0.708	-0.044
18	REN162C04	315	5	2.395	0.597	0.582	-0.025
19	REN169D01	315	6	1.654	0.410	0.395	-0.036
20	REN169O18	315	6	3.590	0.733	0.721	-0.016
21	REN247M23	315	5	3.213	0.743	0.689	-0.079
22	REN54P11	315	3	2.023	0.559	0.506	-0.105
23	REN64E19	315	6	2.855	0.689	0.650	-0.060
24	VGL0760	315	9	4.806	0.841	0.792	-0.062
25	VGL0910	315	8	3.057	0.683	0.673	-0.014
26	VGL1063	315	5	1.531	0.333	0.347	0.039
27	VGL1165	315	10	5.321	0.822	0.812	-0.013
28	VGL1828	315	3	1.056	0.054	0.053	-0.022
29	VGL2009	315	6	1.598	0.384	0.374	-0.026
30	VGL2409	315	6	2.145	0.552	0.534	-0.035
31	VGL2918	315	7	3.908	0.762	0.744	-0.024
32	VGL3008	315	10	5.696	0.851	0.824	-0.032
33	VGL3235	315	5	2.724	0.603	0.633	0.047

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	315	8	2.175	0.559	0.540	-0.034
2	DLA I-4ACA	315	7	3.678	0.752	0.728	-0.033
3	DLA I-4BCT	315	4	3.558	0.756	0.719	-0.051
4	DLA1131	315	6	2.693	0.651	0.629	-0.035
5	5ACA	315	4	1.629	0.390	0.386	-0.012
6	5ACT	315	4	3.100	0.717	0.677	-0.059
7	5BCA	315	4	1.724	0.429	0.420	-0.020

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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