Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Oct 31, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesGerman Shepherd (n=46)
1006387 375 293 1800.05
1045376 371 277 1860.02
1052380 372 289 1840.49
1054382 379 277 1840.05
1068380 373 287 1810.30
1091381 371 277 1810.01
1165392 369 281 1820.01
1166388 379 277 1840.05

DLA Class II Haplotype Frequencies

DLA2 #STR typesGerman Shepherd (n=46)
2002343 327 2800.01
2003343 324 2820.01
2007351 327 2800.05
2017343 322 2800.45
2022339 327 2820.11
2039345 327 2760.02
2053343 324 2800.29
2067343 322 2840.04
2080339 325 2760.01

Allele Frequencies

#Locus NameAlleleGerman Shepherd (n=46)
1AHT121 800.02
880.01
940.05
1000.17
1020.60
1040.09
1060.01
1080.02
1120.02
2AHT137 1310.37
1330.04
1350.01
1370.52
1410.01
1470.01
1510.02
1550.01
3AHTH130 1230.11
1250.03
1270.40
1290.04
1310.41
4AHTh171-A 2190.10
2230.42
2250.02
2330.46
5AHTh260 2380.37
2420.27
2440.02
2460.17
2480.03
2520.13
6AHTk211 870.25
890.35
910.12
950.28
7AHTk253 2800.01
2860.08
2880.72
2900.07
2920.02
2940.11
8C22.279 1160.41
1180.13
1240.03
1260.42
9FH2001 1320.32
1400.01
1440.37
1480.28
1520.02
10FH2054 1520.39
1560.07
1600.05
1640.14
1680.32
1720.03
11FH2848 2320.03
2360.03
2380.03
2400.45
2420.42
2440.03
12INRA21 910.08
950.57
970.04
990.20
1010.12
13INU005 1100.20
1240.29
1260.49
1280.02
14INU030 1460.41
1500.54
1520.04
15INU055 2100.23
2140.07
2180.46
2200.25
16LEI004 850.51
950.43
1030.02
1070.03
17REN105L03 2270.43
2290.01
2310.20
2330.08
2350.09
2410.20
18REN162C04 2000.10
2040.10
2060.41
2080.04
2120.35
19REN169D01 2120.40
2160.55
2180.01
2200.03
20REN169O18 1580.07
1620.24
1640.16
1660.15
1680.35
1720.01
1780.02
21REN247M23 2680.15
2700.75
2720.01
2780.09
22REN54P11 2260.43
2320.05
2340.45
2360.01
2380.05
23REN64E19 1390.01
1430.03
1450.02
1470.08
1530.20
1550.66
24VGL0760 120.13
130.36
140.01
18.20.05
19.20.02
200.01
20.20.11
21.20.21
22.20.09
23.20.01
25VGL0910 16.10.01
17.10.29
18.10.04
19.10.34
20.10.12
21.10.15
22.10.04
26VGL1063 80.01
90.02
100.13
110.03
120.39
130.32
140.07
180.01
190.01
200.01
27VGL1165 140.01
150.18
160.05
170.22
180.01
210.01
220.07
230.01
250.02
260.23
270.11
280.08
28VGL1828 150.03
160.04
170.04
190.86
200.01
220.01
29VGL2009 90.03
110.27
130.20
140.20
150.29
160.01
30VGL2409 150.30
160.23
170.16
180.21
190.10
31VGL2918 120.02
130.12
140.20
150.18
16.30.01
18.30.02
19.30.08
20.30.04
21.30.25
22.30.08
32VGL3008 100.03
130.01
150.63
160.02
170.04
180.20
190.05
200.01
33VGL3235 130.01
140.45
150.38
160.14
170.01
190.01

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

  NNaNeHoHeF
Mean466.0613.1490.6330.6430.014
 SE 0.3710.1970.0230.0210.013

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

  NNaNeHoHeF
Mean465.0002.1630.5060.5000.011
 SE 0.4040.2240.0670.0530.041

Standard genetic assessment for individual STR loci

German Shepherd

#LocusNNaNeHoHeF
1AHT1214692.5010.5870.6000.022
2AHT1374682.4290.5650.5880.039
3AHTH1304652.8810.7170.653-0.099
4AHTh171-A4642.5120.6090.602-0.011
5AHTh2604663.8580.7170.7410.032
6AHTk2114643.6020.6740.7220.067
7AHTk2534661.8620.4570.4630.014
8C22.2794642.7150.5650.6320.105
9FH20014653.1610.6740.6840.014
10FH20544663.5620.7830.719-0.088
11FH28484662.6140.7170.617-0.162
12INRA214652.6330.6300.620-0.016
13INU0054642.7460.6520.636-0.026
14INU0304632.1370.5220.5320.020
15INU0554643.0560.6520.6730.031
16LEI0044642.2150.5430.5480.009
17REN105L034663.5830.6520.7210.095
18REN162C044653.1990.7170.687-0.044
19REN169D014642.1270.4350.5300.179
20REN169O184674.2960.8040.767-0.048
21REN247M234641.6850.3910.4070.038
22REN54P114652.5400.6300.606-0.040
23REN64E194662.0600.4570.5150.113
24VGL076046104.7280.7390.7890.063
25VGL09104674.1490.6520.7590.141
26VGL106346103.6260.7170.7240.009
27VGL116546126.2790.8700.841-0.034
28VGL18284661.3470.2830.258-0.097
29VGL20094664.2070.6740.7620.116
30VGL24094654.4740.8040.776-0.036
31VGL291846106.1070.8480.836-0.014
32VGL30084682.2610.5000.5580.103
33VGL32354662.7500.6520.636-0.025

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#LocusNNaNeHoHeF
1DLA I-3CCA4671.5650.3480.3610.036
2DLA I-4ACA4662.8750.6740.652-0.033
3DLA I-4BCT4652.8180.6740.645-0.045
4DLA11314652.1720.6090.540-0.128
55ACA4641.5040.3040.3350.092
65ACT4642.7010.6740.630-0.070
75BCA4641.5060.2610.3360.223