Statistics and Breed-wide Allele Frequency - Akita

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesAmerican Akita (n=142)Japanese Akita (n=436)Blend Akita (n=59)Unknown Akita (n=4)
1006387 375 293 1800.085------
1014375 373 287 178------0.1
1029380 365 281 1820.1760.2570.1610.3
1040380 371 277 1860.007------
1045376 371 277 1860.004------
1061380 365 281 1830.0210.1710.0680.1
1067376 373 277 1780.0110.0050.017--
1081395 379 289 1780.4080.1390.3220.3
1082390 373 277 1840.1870.0150.1270.1
1083395 375 277 1860.0810.0990.2460.1
1087380 371 277 1780.014------
1092376 379 277 181--0.3070.008--
1108382 371 277 180--0.001----
1114380 373 287 183--0.001----
1135388 385 281 180--0.0050.051--
1149395 377 277 186--0.001----
1160386 369 289 1760.004------
1246395 375 277 1880.004------

DLA Class II Haplotype Frequencies

DLA2 #STR typesAmerican Akita (n=142)Japanese Akita (n=436)Blend Akita (n=59)Unknown Akita (n=4)
2007351 327 2800.085------
2012345 322 280--0.001----
2017343 322 2800.0110.0050.017--
2033339 323 2820.014------
2035341 323 280--0.3070.008--
2036341 327 276--0.002----
2037341 327 2800.1760.2550.1530.3
2039345 327 2760.0850.1040.2970.1
2056339 323 2860.5920.1540.4490.4
2057341 327 2860.0210.1690.0680.1
2058345 323 2880.007------
2060343 323 2840.004------
2061341 327 296--0.002----
2062345 327 282------0.1
2063345 327 2860.004------
2069349 322 280--0.001----
2071339 322 2860.004------
2103341 323 286----0.008--

Allele Frequencies

#Locus NameAlleleAmerican Akita (n=172)Japanese Akita (n=443)Blend Akita (n=68)Unknown Akita (n=4)
1AHT121 780.1260.0030.037--
900.006--0.007--
920.0030.0150.0070.1
960.0710.0020.007--
1000.0790.1200.052--
1020.0680.0020.0600.1
1040.1790.0960.0750.5
106--0.0030.007--
1080.4680.7400.7460.3
110--0.008----
112--0.010----
2AHT137 1310.010------
1330.1880.4830.5240.1
1370.0250.011--0.3
1450.0190.003----
1470.0350.002--0.1
1490.0350.007----
1510.6880.4910.4760.5
153--0.002----
3AHTH130 1110.115--0.032--
113--0.009----
1190.0640.0220.1610.3
1210.3890.0980.1940.1
1230.0060.0080.016--
1250.0860.0010.0320.1
1270.0130.0030.008--
1310.0800.8110.2020.4
133--0.001--0.1
1370.2420.0470.355--
1390.006------
4AHTh171-A 2190.2460.3960.3000.1
2210.2010.0330.085--
2250.0060.0350.015--
2290.2660.0210.1920.4
2310.003------
2330.0360.0210.0150.1
2350.1600.4820.3850.4
2370.083--0.008--
239--0.013----
5AHTh260 2360.0320.003----
2380.3210.2290.323--
240--0.0010.008--
244--0.0130.008--
2460.6440.6700.6611.0
248--0.082----
250--0.001----
2560.003------
6AHTk211 870.0470.0020.007--
890.2890.8740.5440.4
910.3040.1220.2870.5
990.3600.0020.1620.1
7AHTk253 2840.0740.1710.031--
2880.9020.5090.8230.9
2900.003------
2920.0210.3200.1460.1
8C22.279 1100.0240.0030.112--
1160.6470.9900.7610.5
118----0.015--
120----0.0070.1
122--0.001----
1240.2060.0020.0450.3
126------0.1
1300.1240.0030.060--
9FH2001 1320.0380.1500.007--
1360.0440.1510.0820.4
1400.0090.0100.030--
1440.8150.6010.7910.4
1480.0740.0230.0670.3
1520.0210.0620.022--
154--0.002----
10FH2054 1520.0410.0420.0300.1
1560.4500.6560.5670.5
1600.0350.2130.022--
1640.0180.0180.067--
1680.0030.001----
1720.0650.0650.0370.1
1760.3380.0020.2460.3
1800.0440.0010.030--
1840.006------
11FH2848 2280.0260.001----
2300.0880.1680.0160.1
232--0.001----
2340.010------
2360.2400.0480.4020.4
2380.5680.4760.4020.4
2400.0320.2950.1800.1
2420.0290.006----
2440.0030.006----
2460.003------
12INRA21 950.006----0.1
970.5620.3830.4780.4
990.0530.1470.037--
1010.1940.3670.3970.4
1030.012------
1050.1740.1020.0880.1
13INU005 1060.0380.3020.044--
1100.009----0.1
1240.7780.5910.5590.8
1260.1230.0190.199--
1320.0530.0880.1990.1
14INU030 1440.3210.3830.5880.5
1460.1620.2210.0590.3
1500.1820.1400.074--
1520.085--0.029--
1540.2500.2560.2500.3
15INU055 2100.2160.3270.110--
2120.1230.1170.103--
2140.3390.1910.2720.4
2200.061----0.1
2220.2600.3650.5150.5
16LEI004 850.5120.3140.5160.1
890.1070.0030.008--
950.3490.6810.4690.8
1090.0330.0010.0080.1
17REN105L03 2270.0260.0640.113--
2290.1250.2470.1130.1
2310.2690.0910.363--
2330.2340.2980.0560.3
235--0.0090.008--
2370.2720.2150.2100.3
2390.0580.0350.1290.3
2410.0160.0410.0080.1
18REN162C04 2000.0590.0950.140--
202--0.006----
2040.4380.4660.1760.5
2060.3970.1560.2350.4
2080.0120.0050.015--
2100.0940.2730.4340.1
19REN169D01 2020.7640.5590.6690.9
204--0.001----
2100.0100.005----
2120.0130.2250.032--
2160.2130.1160.2020.1
220--0.0940.097--
20REN169O18 1600.1500.6440.6770.3
1620.0030.001----
1640.0570.0050.0160.3
1660.0100.001--0.1
1680.0130.003--0.1
1700.4940.0080.105--
1720.2740.3380.2020.3
21REN247M23 2680.1120.2450.1130.5
2700.0190.0100.0080.1
2720.8170.6800.7740.4
2740.0030.001----
2760.0480.0630.105--
22REN54P11 2240.018--0.086--
2260.2020.5050.4380.1
2280.018------
2300.003------
2320.0060.0020.0080.1
2340.5540.0630.1880.5
2360.1960.4310.2810.3
2380.003------
23REN64E19 1390.1230.5180.2500.4
1430.0150.0110.0220.1
1450.3070.2180.3310.4
1470.3190.0200.0880.1
1490.1020.0010.147--
1510.0670.2130.154--
1530.0670.0180.007--
24VGL0760 120.0240.001----
130.0450.003----
140.3590.3610.5370.3
150.0030.3890.0450.3
16--0.002----
180.003------
18.20.3020.0010.0820.5
19.20.036------
21.2--0.001----
22.20.003------
23.20.1080.0680.216--
24.20.0900.1560.119--
25.20.0270.016----
26.2--0.001----
25VGL0910 15.10.3130.1330.1720.4
16.10.0600.0020.007--
17.10.0060.032----
18.10.2860.5520.6120.4
19.10.1130.0420.045--
20.10.0800.2120.1340.3
21.10.0980.0080.022--
22.10.0450.0190.007--
26VGL1063 80.012----0.1
110.003------
120.020------
130.2920.1840.5510.5
140.6020.5720.4040.4
150.0530.2120.029--
160.0120.0320.007--
170.006--0.007--
27VGL1165 140.0380.0010.066--
15----0.007--
16--0.006----
18------0.1
190.7290.8100.6320.4
200.0150.037----
210.026------
22--0.001----
260.024--0.0150.3
270.035--0.015--
280.003------
290.0150.0710.0070.1
300.0940.0580.0070.1
310.0210.0140.250--
32--0.002----
28VGL1828 150.003--0.007--
17--0.001--0.1
180.5270.2010.1910.4
190.2250.6880.4040.1
19.30.0410.0170.1030.1
200.0830.0570.191--
20.30.1210.0210.0510.3
21.3--0.0150.051--
29VGL2009 90.003--0.007--
100.0090.0080.015--
110.0740.0020.029--
120.3850.1290.3240.3
130.4180.6750.5000.5
140.0440.1610.0370.3
150.0180.024----
160.0500.0010.088--
30VGL2409 130.006------
140.2980.0190.140--
150.0090.0120.007--
160.2430.1700.2720.3
170.0760.6640.3010.3
180.2430.1240.2720.5
190.1260.0080.007--
20--0.002----
31VGL2918 11--0.001----
120.0210.0250.0150.1
130.0450.2770.3280.4
13.30.0030.001----
140.1640.0820.2090.1
150.0090.016----
16--0.001----
17.30.1400.0740.067--
18.30.6130.5090.3660.3
19.30.0060.0140.0150.1
32VGL3008 120.0610.1520.0290.1
130.026------
140.0120.0010.0960.1
150.1080.5630.1180.4
160.4360.1190.3530.3
170.3510.1640.4040.1
180.0030.001----
190.003------
33VGL3235 120.2750.0020.1030.3
130.009------
140.4040.6730.5880.8
150.1740.0180.221--
16--0.051----
170.1290.0050.059--
180.0090.2480.029--
19--0.003----

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
American AkitaMean1726.6672.9470.5680.6090.066
 SE 0.3310.1820.0260.0270.010
  NNaNeHoHeF
Japanese AkitaMean4436.4852.3890.5300.5400.019
 SE 0.3540.1280.0270.0260.008
  NNaNeHoHeF
Blend AkitaMean685.4242.6800.5880.5890.003
 SE 0.2840.1480.0270.0220.024
  NNaNeHoHeF
Unknown AkitaMean43.5452.8430.5980.598-0.018
 SE 0.1770.1560.0390.0300.046

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
American AkitaMean1725.5712.7960.6110.6220.020
 SE 0.5290.2380.0360.0340.009
  NNaNeHoHeF
Japanese AkitaMean4435.1432.6690.5710.5940.036
 SE 0.5510.3220.0360.0400.010
  NNaNeHoHeF
Blend AkitaMean684.4293.0160.6570.649-0.015
 SE 0.4890.2810.0320.0310.031
  NNaNeHoHeF
Unknown AkitaMean43.7143.1450.8930.665-0.356
 SE 0.3330.2380.0470.0330.070

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1216891.7530.3880.4300.097
2AHT1376821.9950.4680.4990.062
3AHTH1306884.3020.8550.768-0.114
4AHTh171-A6873.5390.6310.7170.121
5AHTh2606841.8470.4520.4590.015
6AHTk2116842.4720.6910.595-0.161
7AHTk2536831.4290.3380.300-0.127
8C22.2796861.6730.4030.402-0.002
9FH20016861.5660.3880.362-0.073
10FH20546872.5610.5520.6090.094
11FH28486842.8140.4100.6450.364
12INRA216842.5300.6470.605-0.070
13INU0056842.5440.5740.6070.055
14INU0306852.3910.5590.5820.039
15INU0556842.7650.5740.6380.101
16LEI0046842.0590.3130.5140.392
17REN105L036884.5220.8390.779-0.077
18REN162C046853.3960.7210.706-0.021
19REN169D016842.0040.5970.501-0.191
20REN169O186841.9580.5480.489-0.121
21REN247M236841.6050.3390.3770.101
22REN54P116853.1940.6720.6870.022
23REN64E196874.4290.7940.774-0.026
24VGL07606852.7890.5220.6410.186
25VGL09106872.3550.5220.5750.092
26VGL10636852.1340.5880.531-0.107
27VGL11656882.1400.4850.5330.089
28VGL18286873.9590.7790.747-0.043
29VGL20096872.7400.7210.635-0.135
30VGL24096863.8680.7500.741-0.012
31VGL29186863.4460.8360.710-0.177
32VGL30086853.2060.7350.688-0.069
33VGL32356852.4410.7210.590-0.221

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA6852.4540.5590.5930.057
2DLA I-4ACA6853.9190.7210.7450.033
3DLA I-4BCT6842.9820.6180.6650.071
4DLA11316874.2740.7650.7660.002
55ACA6842.8880.6950.654-0.063
65ACT6832.0630.5250.515-0.020
75BCA6832.5360.7170.606-0.183