Statistics and Breed-wide Allele Frequency - Barbet

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesBarbet (n=68)
1001380 373 281 1820.037
1002380 365 281 1810.066
1003387 375 277 1860.125
1020388 369 289 1840.132
1030380 373 293 1780.029
1033382 379 277 1810.015
1035386 373 277 1840.154
1046376 379 291 1800.029
1092376 379 277 1810.037
1093386 379 277 1800.162
1159395 379 277 1810.103
1200394 367 273 1780.110

DLA Class II Haplotype Frequencies

DLA2 #STR typesBarbet (n=68)
2001343 324 2840.199
2003343 324 2820.132
2006339 325 2800.007
2009351 324 2800.029
2017343 322 2800.029
2023341 323 2820.029
2032339 323 2800.162
2035341 323 2800.051
2043343 324 2960.103
2047339 331 2800.103
2082339 325 2680.147
2113343 324 2920.007

Allele Frequencies

#Locus NameAlleleBarbet (n=69)
1AHT121 960.014
980.384
1000.065
1020.188
1040.029
1060.246
1080.072
2AHT137 1310.297
1350.036
1370.246
1410.290
1470.130
3AHTH130 1110.239
1190.109
1210.109
1230.225
1270.051
1290.268
4AHTh171-A 2190.109
2210.072
2250.043
2290.087
2330.210
2350.261
2370.029
2410.188
5AHTh260 2380.341
2400.014
2420.275
2460.254
2480.094
2540.022
6AHTk211 870.159
890.080
910.659
950.101
7AHTk253 2840.464
2860.254
2880.181
2900.014
2920.087
8C22.279 1160.123
1180.355
1240.384
1260.130
1300.007
9FH2001 1320.536
1360.174
1400.094
1440.174
1520.022
10FH2054 1520.123
1560.188
1600.029
1640.203
1680.174
1720.268
1760.014
11FH2848 2300.036
2320.029
2360.210
2380.138
2400.587
12INRA21 910.014
950.384
970.007
990.007
1010.304
1030.196
1050.087
13INU005 1200.043
1240.688
1260.268
14INU030 1440.457
1460.051
1480.109
1500.319
1520.058
1560.007
15INU055 2100.275
2140.442
2160.087
2180.174
2220.022
16LEI004 850.572
950.181
1070.246
17REN105L03 2270.080
2310.312
2330.094
2350.203
2410.312
18REN162C04 2020.449
2040.007
2060.507
2100.036
19REN169D01 2020.022
2120.239
2160.464
2180.109
2220.167
20REN169O18 1620.500
1640.123
1660.007
1700.370
21REN247M23 2680.478
2700.094
2720.428
22REN54P11 2220.087
2260.254
2280.080
2320.101
2340.152
2360.275
2380.051
23REN64E19 1450.594
1470.174
1490.022
1530.210
24VGL0760 120.138
18.20.145
19.20.072
20.20.210
21.20.007
22.20.014
23.20.283
24.20.116
25.20.014
25VGL0910 130.188
18.10.007
19.10.391
20.10.130
21.10.210
220.007
230.051
23.10.007
240.007
26VGL1063 120.036
130.174
140.732
150.014
160.014
180.014
200.014
27VGL1165 150.007
160.152
180.036
190.014
200.007
210.355
220.014
240.080
260.072
280.051
320.210
28VGL1828 140.051
160.065
170.123
180.123
190.217
200.304
220.022
230.094
29VGL2009 90.152
130.094
140.246
150.312
160.196
30VGL2409 140.384
150.051
160.239
170.239
180.087
31VGL2918 130.290
140.225
150.080
17.30.058
18.30.022
19.30.109
20.30.174
21.30.036
22.30.007
32VGL3008 150.109
170.014
180.391
190.406
220.080
33VGL3235 120.036
130.123
140.138
150.101
160.377
170.152
180.072

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
BarbetMean695.8793.6120.7320.691-0.061
 SE 0.3310.2020.0200.0190.010

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
BarbetMean695.8573.9030.6920.7200.043
 SE 0.4250.4250.0390.0320.016

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1216973.9330.7100.7460.048
2AHT1376953.9790.8260.749-0.103
3AHTH1306964.8610.8260.794-0.040
4AHTh171-A6985.7120.8410.825-0.019
5AHTh2606963.7640.8120.734-0.105
6AHTk2116942.0970.5510.523-0.053
7AHTk2536953.1250.7390.680-0.087
8C22.2796953.2700.7680.694-0.107
9FH20016952.7980.6810.643-0.060
10FH20546975.1280.7970.8050.010
11FH28486952.4400.6090.590-0.031
12INRA216973.4930.8260.714-0.157
13INU0056931.8260.4780.452-0.057
14INU0306963.0500.7540.672-0.121
15INU0556953.2310.6810.6910.014
16LEI0046932.3740.6230.579-0.077
17REN105L036953.9910.8120.749-0.083
18REN162C046942.1710.5940.539-0.101
19REN169D016953.2020.7390.688-0.075
20REN169O186942.4890.6960.598-0.163
21REN247M236932.3790.6670.580-0.150
22REN54P116975.2610.8550.810-0.056
23REN64E196942.3370.5650.5720.012
24VGL07606995.4600.8120.8170.006
25VGL09106993.9590.8260.747-0.105
26VGL10636971.7600.4350.432-0.007
27VGL116569114.7750.8550.791-0.082
28VGL18286985.3650.8260.814-0.015
29VGL20096954.3840.8550.772-0.108
30VGL24096953.6760.7680.728-0.055
31VGL29186995.3170.8840.812-0.089
32VGL30086952.9750.7390.664-0.113
33VGL32356974.6270.6960.7840.113

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA6985.6280.7970.8220.031
2DLA I-4ACA6964.5520.7540.7800.034
3DLA I-4BCT6962.4840.5360.5970.102
4DLA11316964.8680.7680.7950.033
55ACA6942.4990.5360.6000.106
65ACT6953.2020.6810.6880.009
75BCA6964.0870.7680.755-0.017