Statistics and Breed-wide Allele Frequency - Barbet

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Barbet (n=68)
1001	380 373 281 182	0.037
1002	380 365 281 181	0.066
1003	387 375 277 186	0.125
1020	388 369 289 184	0.132
1030	380 373 293 178	0.029
1033	382 379 277 181	0.015
1035	386 373 277 184	0.154
1046	376 379 291 180	0.029
1092	376 379 277 181	0.037
1093	386 379 277 180	0.162
1159	395 379 277 181	0.103
1200	394 367 273 178	0.110

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Barbet (n=68)
2001	343 324 284	0.199
2003	343 324 282	0.132
2006	339 325 280	0.007
2009	351 324 280	0.029
2017	343 322 280	0.029
2023	341 323 282	0.029
2032	339 323 280	0.162
2035	341 323 280	0.051
2043	343 324 296	0.103
2047	339 331 280	0.103
2082	339 325 268	0.147
2113	343 324 292	0.007

Allele Frequencies

#	Locus Name	Allele	Barbet (n=69)
1	AHT121	96	0.014
		98	0.384
		100	0.065
		102	0.188
		104	0.029
		106	0.246
		108	0.072
2	AHT137	131	0.297
		135	0.036
		137	0.246
		141	0.290
		147	0.130
3	AHTH130	111	0.239
		119	0.109
		121	0.109
		123	0.225
		127	0.051
		129	0.268
4	AHTh171-A	219	0.109
		221	0.072
		225	0.043
		229	0.087
		233	0.210
		235	0.261
		237	0.029
		241	0.188
5	AHTh260	238	0.341
		240	0.014
		242	0.275
		246	0.254
		248	0.094
		254	0.022
6	AHTk211	87	0.159
		89	0.080
		91	0.659
		95	0.101
7	AHTk253	284	0.464
		286	0.254
		288	0.181
		290	0.014
		292	0.087
8	C22.279	116	0.123
		118	0.355
		124	0.384
		126	0.130
		130	0.007
9	FH2001	132	0.536
		136	0.174
		140	0.094
		144	0.174
		152	0.022
10	FH2054	152	0.123
		156	0.188
		160	0.029
		164	0.203
		168	0.174
		172	0.268
		176	0.014
11	FH2848	230	0.036
		232	0.029
		236	0.210
		238	0.138
		240	0.587
12	INRA21	91	0.014
		95	0.384
		97	0.007
		99	0.007
		101	0.304
		103	0.196
		105	0.087
13	INU005	120	0.043
		124	0.688
		126	0.268
14	INU030	144	0.457
		146	0.051
		148	0.109
		150	0.319
		152	0.058
		156	0.007
15	INU055	210	0.275
		214	0.442
		216	0.087
		218	0.174
		222	0.022
16	LEI004	85	0.572
		95	0.181
		107	0.246
17	REN105L03	227	0.080
		231	0.312
		233	0.094
		235	0.203
		241	0.312
18	REN162C04	202	0.449
		204	0.007
		206	0.507
		210	0.036
19	REN169D01	202	0.022
		212	0.239
		216	0.464
		218	0.109
		222	0.167
20	REN169O18	162	0.500
		164	0.123
		166	0.007
		170	0.370
21	REN247M23	268	0.478
		270	0.094
		272	0.428
22	REN54P11	222	0.087
		226	0.254
		228	0.080
		232	0.101
		234	0.152
		236	0.275
		238	0.051
23	REN64E19	145	0.594
		147	0.174
		149	0.022
		153	0.210
24	VGL0760	12	0.138
		18.2	0.145
		19.2	0.072
		20.2	0.210
		21.2	0.007
		22.2	0.014
		23.2	0.283
		24.2	0.116
		25.2	0.014
25	VGL0910	13	0.188
		18.1	0.007
		19.1	0.391
		20.1	0.130
		21.1	0.210
		22	0.007
		23	0.051
		23.1	0.007
		24	0.007
26	VGL1063	12	0.036
		13	0.174
		14	0.732
		15	0.014
		16	0.014
		18	0.014
		20	0.014
27	VGL1165	15	0.007
		16	0.152
		18	0.036
		19	0.014
		20	0.007
		21	0.355
		22	0.014
		24	0.080
		26	0.072
		28	0.051
		32	0.210
28	VGL1828	14	0.051
		16	0.065
		17	0.123
		18	0.123
		19	0.217
		20	0.304
		22	0.022
		23	0.094
29	VGL2009	9	0.152
		13	0.094
		14	0.246
		15	0.312
		16	0.196
30	VGL2409	14	0.384
		15	0.051
		16	0.239
		17	0.239
		18	0.087
31	VGL2918	13	0.290
		14	0.225
		15	0.080
		17.3	0.058
		18.3	0.022
		19.3	0.109
		20.3	0.174
		21.3	0.036
		22.3	0.007
32	VGL3008	15	0.109
		17	0.014
		18	0.391
		19	0.406
		22	0.080
33	VGL3235	12	0.036
		13	0.123
		14	0.138
		15	0.101
		16	0.377
		17	0.152
		18	0.072

Standard genetic assessment based on 33 autosomal STR loci

Barbet

		N	Na	Ne	Ho	He	F
	Mean	69	5.879	3.612	0.732	0.691	-0.061
	SE		0.331	0.202	0.020	0.019	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Barbet

		N	Na	Ne	Ho	He	F
	Mean	69	5.857	3.903	0.692	0.720	0.043
	SE		0.425	0.425	0.039	0.032	0.016

Standard genetic assessment for individual STR loci

Barbet

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	69	7	3.933	0.710	0.746	0.048
2	AHT137	69	5	3.979	0.826	0.749	-0.103
3	AHTH130	69	6	4.861	0.826	0.794	-0.040
4	AHTh171-A	69	8	5.712	0.841	0.825	-0.019
5	AHTh260	69	6	3.764	0.812	0.734	-0.105
6	AHTk211	69	4	2.097	0.551	0.523	-0.053
7	AHTk253	69	5	3.125	0.739	0.680	-0.087
8	C22.279	69	5	3.270	0.768	0.694	-0.107
9	FH2001	69	5	2.798	0.681	0.643	-0.060
10	FH2054	69	7	5.128	0.797	0.805	0.010
11	FH2848	69	5	2.440	0.609	0.590	-0.031
12	INRA21	69	7	3.493	0.826	0.714	-0.157
13	INU005	69	3	1.826	0.478	0.452	-0.057
14	INU030	69	6	3.050	0.754	0.672	-0.121
15	INU055	69	5	3.231	0.681	0.691	0.014
16	LEI004	69	3	2.374	0.623	0.579	-0.077
17	REN105L03	69	5	3.991	0.812	0.749	-0.083
18	REN162C04	69	4	2.171	0.594	0.539	-0.101
19	REN169D01	69	5	3.202	0.739	0.688	-0.075
20	REN169O18	69	4	2.489	0.696	0.598	-0.163
21	REN247M23	69	3	2.379	0.667	0.580	-0.150
22	REN54P11	69	7	5.261	0.855	0.810	-0.056
23	REN64E19	69	4	2.337	0.565	0.572	0.012
24	VGL0760	69	9	5.460	0.812	0.817	0.006
25	VGL0910	69	9	3.959	0.826	0.747	-0.105
26	VGL1063	69	7	1.760	0.435	0.432	-0.007
27	VGL1165	69	11	4.775	0.855	0.791	-0.082
28	VGL1828	69	8	5.365	0.826	0.814	-0.015
29	VGL2009	69	5	4.384	0.855	0.772	-0.108
30	VGL2409	69	5	3.676	0.768	0.728	-0.055
31	VGL2918	69	9	5.317	0.884	0.812	-0.089
32	VGL3008	69	5	2.975	0.739	0.664	-0.113
33	VGL3235	69	7	4.627	0.696	0.784	0.113

Standard genetic assessment for 7 STRs in the DLA region

Barbet

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	69	8	5.628	0.797	0.822	0.031
2	DLA I-4ACA	69	6	4.552	0.754	0.780	0.034
3	DLA I-4BCT	69	6	2.484	0.536	0.597	0.102
4	DLA1131	69	6	4.868	0.768	0.795	0.033
5	5ACA	69	4	2.499	0.536	0.600	0.106
6	5ACT	69	5	3.202	0.681	0.688	0.009
7	5BCA	69	6	4.087	0.768	0.755	-0.017

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Barbet

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Barbet

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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