Statistics and Breed-wide Allele Frequency - Berger Picard

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesBerger Picard (n=139)
1052380 372 289 1840.108
1227380 372 289 1860.892

DLA Class II Haplotype Frequencies

DLA2 #STR typesBerger Picard (n=139)
2017343 322 2800.108
2067343 322 2840.892

Allele Frequencies

#Locus NameAlleleBerger Picard (n=139)
1AHT121 960.076
980.428
1000.403
1020.090
1060.004
2AHT137 1310.022
1370.076
1470.734
1490.169
3AHTH130 1210.140
1230.209
1270.004
1310.471
1370.173
1450.004
4AHTh171-A 2191.000
5AHTh260 2420.608
2440.237
2480.155
6AHTk211 910.259
950.147
970.594
7AHTk253 2840.752
2860.014
2880.083
2920.151
8C22.279 1160.277
1180.694
1240.029
9FH2001 1320.068
1440.072
1480.083
1520.770
1560.007
10FH2054 1560.029
1640.097
1680.007
1720.356
1760.504
1800.007
11FH2848 2360.464
2380.417
2400.119
12INRA21 950.288
970.295
1010.417
13INU005 1100.295
1220.507
1260.198
14INU030 1440.014
1460.101
1500.885
15INU055 2100.968
2140.007
2200.025
16LEI004 850.482
950.518
17REN105L03 2330.856
2410.144
18REN162C04 2000.022
2060.806
2080.173
19REN169D01 2120.018
2140.140
2180.004
2200.838
20REN169O18 1640.158
1680.421
1700.417
1720.004
21REN247M23 2680.838
2700.022
2720.004
2740.137
22REN54P11 2220.004
2260.014
2320.673
2340.309
23REN64E19 1470.050
1510.004
1530.050
1550.896
24VGL0760 130.022
140.007
150.119
160.004
20.20.004
21.20.633
22.20.201
23.20.011
25VGL0910 16.10.004
17.10.514
18.10.058
19.10.025
20.10.011
21.10.388
26VGL1063 80.442
100.050
140.022
180.022
190.335
200.129
27VGL1165 160.018
170.338
180.004
200.507
260.014
270.036
280.083
28VGL1828 180.036
190.964
29VGL2009 90.313
110.550
130.137
30VGL2409 150.011
170.187
180.694
18.10.007
190.101
31VGL2918 130.151
140.158
150.004
17.30.683
18.30.004
32VGL3008 140.083
150.579
160.014
180.205
190.115
200.004
33VGL3235 140.953
160.047

Standard genetic assessment based on 33 autosomal STR loci

Berger Picard

  NNaNeHoHeF
Mean1394.0001.9890.4360.4380.004
 SE 0.2780.1090.0350.0340.010

Standard genetic assessment based on 7 STRs in the DLA region

Berger Picard

  NNaNeHoHeF
Mean1391.2861.0680.0370.0550.094
 SE 0.1710.0410.0220.0330.056

Standard genetic assessment for individual STR loci

Berger Picard

#LocusNNaNeHoHeF
1AHT12113952.7830.6470.641-0.011
2AHT13713941.7440.4240.4270.005
3AHTH13013963.1740.7270.685-0.061
4AHTh171-A13911.0000.0000.0000.000
5AHTh26013932.2230.4890.5500.111
6AHTk21113932.2670.5400.5590.035
7AHTk25313941.6800.3880.4050.041
8C22.27913931.7870.4460.440-0.013
9FH200113951.6410.3880.3910.006
10FH205413962.5590.6330.609-0.039
11FH284813932.4780.5970.596-0.001
12INRA2113932.9080.6690.656-0.020
13INU00513932.6080.6470.617-0.050
14INU03013931.2600.2300.207-0.114
15INU05513931.0670.0650.063-0.028
16LEI00413921.9970.4600.4990.078
17REN105L0313921.3270.2450.2460.007
18REN162C0413931.4720.3020.3200.057
19REN169D0113941.3840.2660.2780.041
20REN169O1813942.6570.5900.6240.054
21REN247M2313941.3860.2810.278-0.008
22REN54P1113941.8240.4390.4520.028
23REN64E1913941.2390.2090.193-0.083
24VGL076013982.1920.4820.5440.114
25VGL091013962.3830.6120.580-0.054
26VGL106313963.0500.7050.672-0.049
27VGL116513972.6300.6040.6200.025
28VGL182813921.0750.0580.0690.170
29VGL200913932.3840.5540.5800.046
30VGL240913951.8970.4680.4730.011
31VGL291813951.9420.5040.485-0.038
32VGL300813962.5140.6400.602-0.063
33VGL323513921.0980.0940.089-0.049

Standard genetic assessment for 7 STRs in the DLA region

Berger Picard

#LocusNNaNeHoHeF
1DLA I-3CCA13911.0000.0000.0000.000
2DLA I-4ACA13911.0000.0000.0000.000
3DLA I-4BCT13911.0000.0000.0000.000
4DLA113113921.2380.1290.1930.327
55ACA13911.0000.0000.0000.000
65ACT13911.0000.0000.0000.000
75BCA13921.2380.1290.1930.327