Statistics and Breed-wide Allele Frequency - Berger Picard

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesBerger Picard (n=99)
1052380 372 289 1840.121
1227380 372 289 1860.879

DLA Class II Haplotype Frequencies

DLA2 #STR typesBerger Picard (n=99)
2017343 322 2800.121
2067343 322 2840.879

Allele Frequencies

#Locus NameAlleleBerger Picard (n=99)
1AHT121 960.066
980.419
1000.404
1020.111
2AHT137 1310.030
1370.076
1470.707
1490.187
3AHTH130 1210.167
1230.172
1270.005
1310.439
1370.217
4AHTh171-A 2191.000
5AHTh260 2420.581
2440.227
2480.192
6AHTk211 910.313
950.136
970.551
7AHTk253 2840.758
2860.020
2880.066
2920.157
8C22.279 1160.253
1180.722
1240.025
9FH2001 1320.076
1440.081
1480.081
1520.763
10FH2054 1560.035
1640.081
1680.010
1720.379
1760.490
1800.005
11FH2848 2360.475
2380.419
2400.106
12INRA21 950.288
970.263
1010.449
13INU005 1100.293
1220.495
1260.212
14INU030 1440.020
1460.111
1500.869
15INU055 2100.960
2140.010
2200.030
16LEI004 850.535
950.465
17REN105L03 2330.838
2410.162
18REN162C04 2000.030
2060.747
2080.222
19REN169D01 2120.025
2140.146
2180.005
2200.823
20REN169O18 1640.152
1680.364
1700.485
21REN247M23 2680.859
2700.025
2720.005
2740.111
22REN54P11 2220.005
2260.020
2320.677
2340.298
23REN64E19 1470.066
1510.005
1530.030
1550.899
24VGL0760 130.015
140.005
150.086
160.005
20.20.005
21.20.667
22.20.202
23.20.015
25VGL0910 16.10.005
17.10.490
18.10.051
19.10.030
20.10.010
21.10.414
26VGL1063 80.480
100.056
140.020
180.030
190.318
200.096
27VGL1165 160.020
170.364
180.005
200.470
260.020
270.035
280.086
28VGL1828 180.051
190.949
29VGL2009 90.293
110.535
130.172
30VGL2409 150.015
170.177
180.677
18.10.010
190.121
31VGL2918 130.157
140.141
150.005
17.30.692
18.30.005
32VGL3008 140.076
150.601
180.207
190.111
200.005
33VGL3235 140.960
160.040

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Berger PicardMean993.8482.0020.4440.4430.002
 SE 0.2650.1090.0350.0340.014

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Berger PicardMean991.2861.0770.0460.0610.069
 SE 0.1710.0460.0280.0360.041

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1219942.8120.6670.644-0.035
2AHT1379941.8470.4440.4580.031
3AHTH1309953.3610.7880.702-0.122
4AHTh171-A9911.0000.0000.0000.000
5AHTh2609932.3480.4950.5740.138
6AHTk2119932.3830.6060.580-0.044
7AHTk2539941.6580.3330.3970.160
8C22.2799931.7060.4140.414-0.000
9FH20019941.6660.4040.400-0.011
10FH20549962.5550.6060.6090.004
11FH28489932.4250.6570.588-0.117
12INRA219932.8260.6160.6460.046
13INU0059932.6610.6060.6240.029
14INU0309931.3030.2630.233-0.129
15INU0559931.0850.0810.078-0.034
16LEI0049921.9900.4040.4980.188
17REN105L039921.3720.2630.2710.031
18REN162C049931.6420.3840.3910.018
19REN169D019941.4290.2930.3000.024
20REN169O189932.5620.6060.6100.006
21REN247M239941.3330.2420.2500.030
22REN54P119941.8270.4650.453-0.026
23REN64E199941.2290.2020.187-0.083
24VGL07609982.0280.4650.5070.083
25VGL09109962.4090.6060.585-0.036
26VGL10639962.8980.7270.655-0.110
27VGL11659972.7600.6360.6380.002
28VGL18289921.1060.0810.0960.157
29VGL20099932.4880.6060.598-0.013
30VGL24099951.9830.4650.4960.063
31VGL29189951.9110.5150.477-0.081
32VGL30089952.3690.6160.578-0.066
33VGL32359921.0840.0810.078-0.042

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA9911.0000.0000.0000.000
2DLA I-4ACA9911.0000.0000.0000.000
3DLA I-4BCT9911.0000.0000.0000.000
4DLA11319921.2710.1620.2130.241
55ACA9911.0000.0000.0000.000
65ACT9911.0000.0000.0000.000
75BCA9921.2710.1620.2130.241