Statistics and Breed-wide Allele Frequency - Berger Picard

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesBerger Picard (n=101)
1052380 372 289 1840.129
1227380 372 289 1860.871

DLA Class II Haplotype Frequencies

DLA2 #STR typesBerger Picard (n=101)
2017343 322 2800.129
2067343 322 2840.871

Allele Frequencies

#Locus NameAlleleBerger Picard (n=101)
1AHT121 960.064
980.426
1000.401
1020.109
2AHT137 1310.030
1370.084
1470.703
1490.183
3AHTH130 1210.163
1230.173
1270.005
1310.441
1370.218
4AHTh171-A 2191.000
5AHTh260 2420.579
2440.233
2480.188
6AHTk211 910.307
950.139
970.554
7AHTk253 2840.762
2860.020
2880.064
2920.153
8C22.279 1160.252
1180.723
1240.025
9FH2001 1320.074
1440.079
1480.079
1520.767
10FH2054 1560.035
1640.084
1680.010
1720.376
1760.490
1800.005
11FH2848 2360.475
2380.421
2400.104
12INRA21 950.297
970.262
1010.441
13INU005 1100.292
1220.495
1260.213
14INU030 1440.020
1460.109
1500.871
15INU055 2100.960
2140.010
2200.030
16LEI004 850.540
950.460
17REN105L03 2330.842
2410.158
18REN162C04 2000.030
2060.752
2080.218
19REN169D01 2120.025
2140.144
2180.005
2200.827
20REN169O18 1640.158
1680.366
1700.475
21REN247M23 2680.851
2700.025
2720.005
2740.119
22REN54P11 2220.005
2260.020
2320.678
2340.297
23REN64E19 1470.069
1510.005
1530.030
1550.896
24VGL0760 130.015
140.005
150.089
160.005
20.20.005
21.20.668
22.20.198
23.20.015
25VGL0910 16.10.005
17.10.490
18.10.054
19.10.030
20.10.010
21.10.411
26VGL1063 80.485
100.054
140.020
180.030
190.317
200.094
27VGL1165 160.020
170.366
180.005
200.470
260.020
270.035
280.084
28VGL1828 180.050
190.950
29VGL2009 90.292
110.540
130.168
30VGL2409 150.015
170.178
180.678
18.10.010
190.119
31VGL2918 130.158
140.139
150.005
17.30.693
18.30.005
32VGL3008 140.074
150.594
180.218
190.109
200.005
33VGL3235 140.955
160.045

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Berger PicardMean1013.8482.0000.4420.4420.005
 SE 0.2650.1090.0350.0340.014

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Berger PicardMean1011.2861.0830.0450.0640.084
 SE 0.1710.0490.0270.0380.050

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12110142.7930.6630.642-0.033
2AHT13710141.8670.4550.4640.019
3AHTH13010153.3520.7920.702-0.129
4AHTh171-A10111.0000.0000.0000.000
5AHTh26010132.3530.4850.5750.156
6AHTk21110132.3760.6040.579-0.043
7AHTk25310141.6410.3270.3910.164
8C22.27910131.7040.4160.413-0.006
9FH200110141.6480.3960.393-0.007
10FH205410162.5630.6040.6100.010
11FH284810132.4170.6440.586-0.098
12INRA2110132.8470.6140.6490.054
13INU00510132.6620.6040.6240.033
14INU03010131.2960.2570.229-0.126
15INU05510131.0830.0790.077-0.033
16LEI00410121.9880.4060.4970.183
17REN105L0310121.3640.2570.2670.035
18REN162C0410131.6270.3760.3850.024
19REN169D0110141.4190.2870.2950.028
20REN169O1810132.5960.6140.6150.002
21REN247M2310141.3520.2380.2600.087
22REN54P1110141.8230.4650.451-0.031
23REN64E1910141.2370.2080.191-0.086
24VGL076010182.0230.4650.5060.080
25VGL091010162.4210.6140.587-0.046
26VGL106310162.8670.7230.651-0.110
27VGL116510172.7440.6240.6360.019
28VGL182810121.1040.0790.0940.158
29VGL200910132.4700.6040.595-0.015
30VGL240910151.9760.4650.4940.058
31VGL291810151.9060.5150.475-0.083
32VGL300810152.3940.6140.582-0.054
33VGL323510121.0930.0890.085-0.047

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA10111.0000.0000.0000.000
2DLA I-4ACA10111.0000.0000.0000.000
3DLA I-4BCT10111.0000.0000.0000.000
4DLA113110121.2890.1580.2240.294
55ACA10111.0000.0000.0000.000
65ACT10111.0000.0000.0000.000
75BCA10121.2890.1580.2240.294