Statistics and Breed-wide Allele Frequency - Berger Picard

Updated Jun 17, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesBerger Picard (n=110)
1052380 372 289 1840.118
1227380 372 289 1860.882

DLA Class II Haplotype Frequencies

DLA2 #STR typesBerger Picard (n=110)
2017343 322 2800.118
2067343 322 2840.882

Allele Frequencies

#Locus NameAlleleBerger Picard (n=110)
1AHT121 960.059
980.468
1000.373
1020.100
2AHT137 1310.027
1370.086
1470.718
1490.168
3AHTH130 1210.168
1230.177
1270.005
1310.445
1370.200
1450.005
4AHTh171-A 2191.000
5AHTh260 2420.609
2440.214
2480.177
6AHTk211 910.291
950.141
970.568
7AHTk253 2840.777
2860.018
2880.064
2920.141
8C22.279 1160.282
1180.695
1240.023
9FH2001 1320.068
1440.073
1480.073
1520.786
10FH2054 1560.032
1640.086
1680.009
1720.373
1760.495
1800.005
11FH2848 2360.473
2380.395
2400.132
12INRA21 950.295
970.282
1010.423
13INU005 1100.291
1220.491
1260.218
14INU030 1440.018
1460.100
1500.882
15INU055 2100.964
2140.009
2200.027
16LEI004 850.509
950.491
17REN105L03 2330.850
2410.150
18REN162C04 2000.027
2060.768
2080.205
19REN169D01 2120.023
2140.132
2180.005
2200.841
20REN169O18 1640.168
1680.386
1700.445
21REN247M23 2680.841
2700.023
2720.005
2740.132
22REN54P11 2220.005
2260.018
2320.700
2340.277
23REN64E19 1470.064
1510.005
1530.027
1550.905
24VGL0760 130.018
140.009
150.127
160.005
20.20.005
21.20.627
22.20.195
23.20.014
25VGL0910 16.10.005
17.10.500
18.10.055
19.10.027
20.10.009
21.10.405
26VGL1063 80.477
100.050
140.023
180.027
190.332
200.091
27VGL1165 160.018
170.355
180.005
200.495
260.018
270.032
280.077
28VGL1828 180.045
190.955
29VGL2009 90.327
110.509
130.164
30VGL2409 150.014
170.164
180.686
18.10.009
190.127
31VGL2918 130.145
140.132
150.005
17.30.714
18.30.005
32VGL3008 140.068
150.595
180.232
190.100
200.005
33VGL3235 140.941
160.059

Standard genetic assessment based on 33 autosomal STR loci

Berger Picard

  NNaNeHoHeF
Mean1103.8791.9910.4340.4390.013
 SE 0.2700.1090.0350.0340.014

Standard genetic assessment based on 7 STRs in the DLA region

Berger Picard

  NNaNeHoHeF
Mean1101.2861.0750.0420.0600.086
 SE 0.1710.0450.0250.0360.052

Standard genetic assessment for individual STR loci

Berger Picard

#LocusNNaNeHoHeF
1AHT12111042.6910.6180.6280.016
2AHT13711041.8110.4360.4480.025
3AHTH13011063.3540.7910.702-0.127
4AHTh171-A11011.0000.0000.0000.000
5AHTh26011032.2320.4550.5520.176
6AHTk21111032.3400.5910.573-0.032
7AHTk25311041.5910.3090.3720.168
8C22.27911031.7740.4090.4360.063
9FH200111041.5780.3640.3660.008
10FH205411062.5450.6270.607-0.033
11FH284811032.5170.6270.603-0.041
12INRA2111032.8950.6450.6550.014
13INU00511032.6790.6360.627-0.015
14INU03011031.2690.2360.212-0.115
15INU05511031.0760.0730.071-0.030
16LEI00411021.9990.4000.5000.200
17REN105L0311021.3420.2450.2550.037
18REN162C0411031.5810.3550.3670.035
19REN169D0111041.3790.2640.2750.041
20REN169O1811032.6600.6090.6240.024
21REN247M2311041.3790.2640.2750.041
22REN54P1111041.7630.4360.433-0.008
23REN64E1911041.2150.1910.177-0.079
24VGL076011082.2300.4820.5510.126
25VGL091011062.3950.6270.583-0.077
26VGL106311062.8580.7180.650-0.105
27VGL116511072.6400.5910.6210.049
28VGL182811021.0950.0730.0870.162
29VGL200911032.5440.5820.6070.041
30VGL240911051.9440.4640.4860.045
31VGL291811051.8250.4820.452-0.066
32VGL300811052.3640.6090.577-0.056
33VGL323511021.1250.1180.111-0.063

Standard genetic assessment for 7 STRs in the DLA region

Berger Picard

#LocusNNaNeHoHeF
1DLA I-3CCA11011.0000.0000.0000.000
2DLA I-4ACA11011.0000.0000.0000.000
3DLA I-4BCT11011.0000.0000.0000.000
4DLA113111021.2630.1450.2080.302
55ACA11011.0000.0000.0000.000
65ACT11011.0000.0000.0000.000
75BCA11021.2630.1450.2080.302