Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Nov 29, 2023

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=151)
1006	387 375 293 180	0.083
1016	382 371 277 178	0.043
1030	380 373 293 178	0.013
1068	380 373 287 181	0.063
1094	395 375 277 176	0.142
1121	380 371 277 183	0.099
1160	386 369 289 176	0.530
1221	380 365 293 180	0.017
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=151)
2001	343 324 284	0.013
2005	339 322 280	0.146
2007	351 327 280	0.089
2012	345 322 280	0.003
2021	339 324 268	0.043
2024	343 323 280	0.523
2053	343 324 280	0.063
2071	339 322 286	0.099
2118	347 327 280	0.017
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=151)
1	AHT121	80	0.003
		96	0.046
		98	0.526
		100	0.109
		102	0.265
		104	0.020
		106	0.003
		108	0.026
2	AHT137	131	0.421
		137	0.278
		141	0.020
		147	0.070
		149	0.175
		153	0.036
3	AHTH130	121	0.017
		123	0.526
		127	0.060
		129	0.156
		135	0.003
		139	0.235
		143	0.003
4	AHTh171-A	219	0.520
		225	0.159
		235	0.321
5	AHTh260	240	0.026
		244	0.272
		246	0.199
		250	0.079
		252	0.275
		254	0.136
		256	0.013
6	AHTk211	87	0.821
		91	0.043
		93	0.079
		97	0.053
		99	0.003
7	AHTk253	286	0.169
		288	0.411
		290	0.119
		292	0.301
8	C22.279	116	0.149
		118	0.252
		124	0.599
9	FH2001	132	0.543
		136	0.096
		140	0.106
		144	0.017
		148	0.017
		152	0.222
10	FH2054	148	0.007
		152	0.152
		156	0.576
		160	0.020
		164	0.116
		168	0.129
11	FH2848	234	0.328
		238	0.079
		242	0.394
		244	0.199
12	INRA21	95	0.788
		101	0.043
		103	0.169
13	INU005	124	0.036
		126	0.338
		128	0.477
		130	0.146
		132	0.003
14	INU030	144	0.483
		146	0.083
		150	0.411
		152	0.023
15	INU055	210	0.795
		212	0.073
		214	0.007
		218	0.126
16	LEI004	85	0.033
		95	0.798
		107	0.132
		109	0.007
		111	0.030
17	REN105L03	229	0.126
		231	0.301
		233	0.010
		237	0.262
		241	0.301
18	REN162C04	202	0.225
		204	0.179
		206	0.480
		208	0.116
19	REN169D01	202	0.003
		212	0.020
		216	0.063
		218	0.099
		220	0.801
		222	0.013
20	REN169O18	160	0.013
		162	0.394
		164	0.060
		166	0.003
		168	0.467
		170	0.063
21	REN247M23	268	0.033
		270	0.735
		272	0.063
		274	0.093
		276	0.010
		278	0.066
22	REN54P11	222	0.623
		226	0.063
		228	0.099
		232	0.043
		234	0.013
		236	0.017
		238	0.142
23	REN64E19	139	0.013
		145	0.705
		147	0.096
		153	0.185
24	VGL0760	12	0.003
		13	0.222
		14	0.616
		19.2	0.003
		20.2	0.030
		21.2	0.013
		22.2	0.089
		23.2	0.007
		24.2	0.017
25	VGL0910	12	0.632
		13	0.007
		17.1	0.003
		18.1	0.026
		19.1	0.050
		20.1	0.010
		21.1	0.106
		22.1	0.149
		23.1	0.017
26	VGL1063	8	0.162
		12	0.172
		13	0.033
		14	0.262
		15	0.030
		16	0.036
		17	0.003
		18	0.026
		19	0.248
		20	0.023
		21	0.003
27	VGL1165	15	0.033
		16	0.003
		17	0.003
		18	0.126
		20	0.003
		21	0.616
		26	0.116
		27	0.007
		28	0.066
		30	0.023
		31	0.003
28	VGL1828	14	0.169
		15	0.116
		16	0.192
		17	0.036
		19	0.033
		20	0.450
		21	0.003
29	VGL2009	10	0.023
		13	0.070
		14	0.159
		15	0.742
		16	0.007
30	VGL2409	13	0.589
		14	0.003
		16	0.003
		17	0.099
		18	0.295
		19	0.010
31	VGL2918	12	0.007
		13	0.728
		14	0.209
		15	0.013
		16	0.007
		17.3	0.003
		19.3	0.033
32	VGL3008	13	0.010
		15	0.434
		16	0.030
		17	0.030
		18	0.424
		19	0.043
		20	0.030
33	VGL3235	13	0.126
		14	0.301
		15	0.010
		16	0.295
		17	0.152
		18	0.056
		19	0.060

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	151	5.970	2.639	0.578	0.577	0.001
	SE		0.352	0.160	0.026	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	151	4.714	2.366	0.577	0.553	-0.040
	SE		0.171	0.181	0.049	0.046	0.006

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	151	8	2.758	0.616	0.637	0.034
2	AHT137	151	6	3.430	0.689	0.708	0.028
3	AHTH130	151	7	2.774	0.563	0.639	0.120
4	AHTh171-A	151	3	2.508	0.616	0.601	-0.024
5	AHTh260	151	7	4.665	0.801	0.786	-0.020
6	AHTk211	151	5	1.459	0.311	0.315	0.011
7	AHTk253	151	4	3.310	0.629	0.698	0.099
8	C22.279	151	3	2.249	0.543	0.555	0.022
9	FH2001	151	6	2.739	0.689	0.635	-0.085
10	FH2054	151	6	2.593	0.649	0.614	-0.057
11	FH2848	151	4	3.241	0.715	0.691	-0.034
12	INRA21	151	3	1.535	0.325	0.349	0.069
13	INU005	151	5	2.747	0.675	0.636	-0.062
14	INU030	151	4	2.441	0.623	0.590	-0.055
15	INU055	151	4	1.532	0.344	0.347	0.008
16	LEI004	151	5	1.523	0.305	0.344	0.113
17	REN105L03	151	5	3.760	0.742	0.734	-0.010
18	REN162C04	151	4	3.062	0.623	0.673	0.076
19	REN169D01	151	6	1.523	0.351	0.343	-0.022
20	REN169O18	151	6	2.625	0.649	0.619	-0.048
21	REN247M23	151	6	1.790	0.424	0.441	0.040
22	REN54P11	151	7	2.359	0.563	0.576	0.023
23	REN64E19	151	4	1.848	0.477	0.459	-0.039
24	VGL0760	151	9	2.283	0.616	0.562	-0.096
25	VGL0910	151	9	2.288	0.570	0.563	-0.012
26	VGL1063	151	11	5.245	0.848	0.809	-0.047
27	VGL1165	151	11	2.411	0.576	0.585	0.016
28	VGL1828	151	7	3.520	0.775	0.716	-0.082
29	VGL2009	151	5	1.722	0.377	0.419	0.099
30	VGL2409	151	6	2.251	0.530	0.556	0.047
31	VGL2918	151	7	1.737	0.424	0.424	0.001
32	VGL3008	151	7	2.685	0.669	0.628	-0.066
33	VGL3235	151	7	4.474	0.781	0.777	-0.006

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	151	5	2.800	0.675	0.643	-0.051
2	DLA I-4ACA	151	5	2.756	0.675	0.637	-0.060
3	DLA I-4BCT	151	5	2.605	0.642	0.616	-0.043
4	DLA1131	151	5	2.065	0.536	0.516	-0.040
5	5ACA	151	5	2.200	0.556	0.546	-0.020
6	5ACT	151	4	2.745	0.669	0.636	-0.052
7	5BCA	151	4	1.390	0.285	0.280	-0.015

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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