Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Aug 21, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesBernese Mountain Dog (n=32)
1006387 375 293 1800.05
1016382 371 277 1780.02
1030380 373 293 1780.02
1068380 373 287 1810.06
1094395 375 277 1760.09
1121380 371 277 1830.03
1160386 369 289 1760.72
1221380 365 293 1800.02

DLA Class II Haplotype Frequencies

DLA2 #STR typesBernese Mountain Dog (n=32)
2001343 324 2840.02
2005339 322 2800.09
2007351 327 2800.06
2021339 324 2680.02
2024343 323 2800.70
2053343 324 2800.06
2071339 322 2860.03
2118347 327 2800.02

Allele Frequencies

#Locus NameAlleleBernese Mountain Dog (n=32)
1AHT121 960.08
980.50
1000.06
1020.30
1080.06
2AHT137 1310.34
1370.28
1410.05
1470.08
1490.23
1530.02
3AHTH130 1210.02
1230.56
1270.05
1290.17
1390.20
4AHTh171-A 2190.56
2250.09
2350.34
5AHTh260 2400.03
2440.23
2460.19
2500.08
2520.34
2540.13
6AHTk211 870.88
910.03
930.05
970.05
7AHTk253 2860.16
2880.39
2900.16
2920.30
8C22.279 1160.14
1180.30
1240.56
9FH2001 1320.50
1360.16
1400.09
1440.03
1480.02
1520.20
10FH2054 1480.03
1520.11
1560.56
1600.03
1640.16
1680.11
11FH2848 2340.33
2380.06
2420.45
2440.16
12INRA21 950.75
1010.03
1030.22
13INU005 1240.05
1260.31
1280.50
1300.14
14INU030 1440.56
1460.05
1500.36
1520.03
15INU055 2100.72
2120.06
2180.22
16LEI004 850.02
950.83
1070.11
1110.05
17REN105L03 2290.19
2310.28
2330.02
2370.25
2410.27
18REN162C04 2020.19
2040.17
2060.47
2080.17
19REN169D01 2120.02
2160.02
2180.09
2200.88
20REN169O18 1600.02
1620.34
1640.06
1660.02
1680.47
1700.09
21REN247M23 2680.03
2700.70
2720.11
2740.11
2780.05
22REN54P11 2220.44
2260.05
2280.20
2320.05
2360.02
2380.25
23REN64E19 1390.03
1450.67
1470.06
1530.23
24VGL0760 130.23
140.61
20.20.08
21.20.05
22.20.03
25VGL0910 120.63
130.02
18.10.02
19.10.02
21.10.05
22.10.23
23.10.05
26VGL1063 80.11
120.17
130.05
140.31
150.03
160.02
180.05
190.27
27VGL1165 150.05
160.02
170.02
180.11
210.56
260.14
280.08
300.03
28VGL1828 140.16
150.14
160.22
170.05
190.03
200.41
29VGL2009 100.03
130.05
140.11
150.81
30VGL2409 130.59
170.06
180.33
190.02
31VGL2918 130.69
140.27
160.03
19.30.02
32VGL3008 130.03
150.42
160.05
170.03
180.44
190.03
33VGL3235 130.14
140.33
150.02
160.23
170.14
180.03
190.11

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Bernese Mountain DogMean324.9392.6840.6060.579-0.044
 SE 0.2380.1610.0310.0270.020

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Bernese Mountain DogMean324.4291.6590.3930.379-0.034
 SE 0.1870.0970.0480.0440.017

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1213252.8400.6880.648-0.061
2AHT1373263.8350.7190.7390.028
3AHTH1303252.5660.5310.6100.130
4AHTh171-A3232.2560.5310.5570.046
5AHTh2603264.3300.8750.769-0.138
6AHTk2113241.2970.1880.2290.181
7AHTk2533243.4540.7190.710-0.012
8C22.2793232.3570.7500.576-0.303
9FH20013263.0700.8130.674-0.205
10FH20543262.7270.6880.633-0.086
11FH28483242.9300.7190.659-0.091
12INRA213231.6360.3750.3890.035
13INU0053242.7050.7190.630-0.140
14INU0303242.2290.5630.551-0.020
15INU0553231.7590.4380.432-0.014
16LEI0043241.4280.3440.300-0.147
17REN105L033254.0390.8440.752-0.121
18REN162C043243.1850.6880.686-0.002
19REN169D013241.2900.2500.225-0.111
20REN169O183262.8480.5630.6490.133
21REN247M233251.9180.4060.4790.151
22REN54P113263.3360.5940.7000.152
23REN64E193241.9560.4690.4890.041
24VGL07603252.2960.6560.564-0.163
25VGL09103272.2190.5630.549-0.024
26VGL10633284.6440.8440.785-0.075
27VGL11653282.7940.6560.642-0.022
28VGL18283263.8420.7500.740-0.014
29VGL20093241.4810.3750.325-0.155
30VGL24093242.1540.5940.536-0.108
31VGL29183241.8370.4380.4560.040
32VGL30083262.6700.7810.625-0.249
33VGL32353274.6440.8750.785-0.115

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA3251.8400.4690.457-0.027
2DLA I-4ACA3251.8350.5000.455-0.099
3DLA I-4BCT3241.8300.4690.454-0.033
4DLA11313251.4930.3440.330-0.041
55ACA3241.5770.3440.3660.060
65ACT3241.9050.5000.475-0.052
75BCA3241.1360.1250.120-0.045