Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Jun 15, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=189)
1006	387 375 293 180	0.079
1016	382 371 277 178	0.042
1030	380 373 293 178	0.013
1068	380 373 287 181	0.069
1094	395 375 277 176	0.122
1121	380 371 277 183	0.095
1160	386 369 289 176	0.558
1221	380 365 293 180	0.013
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=189)
2001	343 324 284	0.013
2005	339 322 280	0.124
2007	351 327 280	0.085
2012	345 322 280	0.003
2021	339 324 268	0.042
2024	343 323 280	0.553
2053	343 324 280	0.069
2071	339 322 286	0.095
2118	347 327 280	0.013
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=189)
1	AHT121	80	0.003
		96	0.048
		98	0.561
		100	0.101
		102	0.243
		104	0.019
		106	0.003
		108	0.024
2	AHT137	131	0.407
		137	0.280
		141	0.026
		147	0.066
		149	0.188
		153	0.032
3	AHTH130	121	0.013
		123	0.492
		127	0.061
		129	0.164
		135	0.005
		139	0.262
		143	0.003
4	AHTh171-A	219	0.516
		225	0.153
		235	0.331
5	AHTh260	240	0.034
		244	0.257
		246	0.209
		250	0.082
		252	0.286
		254	0.119
		256	0.013
6	AHTk211	87	0.820
		91	0.040
		93	0.079
		97	0.058
		99	0.003
7	AHTk253	286	0.153
		288	0.410
		290	0.138
		292	0.299
8	C22.279	116	0.132
		118	0.257
		124	0.611
9	FH2001	132	0.556
		136	0.085
		140	0.106
		144	0.016
		148	0.021
		152	0.217
10	FH2054	148	0.005
		152	0.153
		156	0.582
		160	0.024
		164	0.119
		168	0.116
11	FH2848	234	0.341
		238	0.085
		242	0.370
		244	0.204
12	INRA21	95	0.754
		101	0.063
		103	0.183
13	INU005	124	0.032
		126	0.317
		128	0.503
		130	0.146
		132	0.003
14	INU030	144	0.511
		146	0.082
		150	0.386
		152	0.021
15	INU055	210	0.810
		212	0.066
		214	0.005
		218	0.119
16	LEI004	85	0.037
		95	0.788
		107	0.138
		109	0.005
		111	0.032
17	REN105L03	229	0.132
		231	0.328
		233	0.008
		237	0.233
		241	0.299
18	REN162C04	202	0.209
		204	0.183
		206	0.489
		208	0.119
19	REN169D01	202	0.003
		212	0.016
		216	0.063
		218	0.106
		220	0.802
		222	0.011
20	REN169O18	160	0.011
		162	0.421
		164	0.053
		166	0.003
		168	0.458
		170	0.056
21	REN247M23	268	0.032
		270	0.754
		272	0.061
		274	0.082
		276	0.011
		278	0.061
22	REN54P11	222	0.606
		226	0.061
		228	0.095
		232	0.050
		234	0.011
		236	0.016
		238	0.161
23	REN64E19	139	0.011
		145	0.709
		147	0.093
		153	0.188
24	VGL0760	12	0.003
		13	0.225
		14	0.611
		19.2	0.003
		20.2	0.026
		21.2	0.011
		22.2	0.095
		23.2	0.008
		24.2	0.019
25	VGL0910	12	0.653
		13	0.005
		17.1	0.003
		18.1	0.021
		19.1	0.053
		20.1	0.008
		21.1	0.111
		22.1	0.132
		23.1	0.013
26	VGL1063	8	0.148
		12	0.161
		13	0.032
		14	0.291
		15	0.024
		16	0.034
		17	0.003
		18	0.026
		19	0.251
		20	0.021
		21	0.003
		22	0.005
27	VGL1165	15	0.029
		16	0.003
		17	0.003
		18	0.124
		20	0.005
		21	0.616
		26	0.122
		27	0.005
		28	0.061
		30	0.029
		31	0.003
28	VGL1828	14	0.169
		15	0.108
		16	0.190
		17	0.037
		19	0.026
		20	0.466
		21	0.003
29	VGL2009	10	0.026
		13	0.074
		14	0.153
		15	0.738
		16	0.008
30	VGL2409	13	0.579
		14	0.003
		16	0.005
		17	0.101
		18	0.296
		19	0.016
31	VGL2918	12	0.011
		13	0.712
		14	0.220
		15	0.019
		16	0.008
		17.3	0.003
		19.3	0.029
32	VGL3008	13	0.011
		15	0.444
		16	0.032
		17	0.024
		18	0.418
		19	0.040
		20	0.032
33	VGL3235	13	0.135
		14	0.280
		15	0.011
		16	0.302
		17	0.151
		18	0.050
		19	0.066
		20	0.005

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	189	6.030	2.625	0.574	0.576	0.006
	SE		0.370	0.158	0.025	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	189	4.714	2.264	0.570	0.536	-0.060
	SE		0.171	0.164	0.049	0.044	0.007

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	189	8	2.583	0.598	0.613	0.025
2	AHT137	189	6	3.497	0.683	0.714	0.044
3	AHTH130	189	7	2.928	0.603	0.658	0.084
4	AHTh171-A	189	3	2.506	0.624	0.601	-0.039
5	AHTh260	189	7	4.686	0.799	0.787	-0.016
6	AHTk211	189	5	1.462	0.291	0.316	0.080
7	AHTk253	189	4	3.334	0.667	0.700	0.048
8	C22.279	189	3	2.189	0.550	0.543	-0.013
9	FH2001	189	6	2.668	0.672	0.625	-0.075
10	FH2054	189	6	2.560	0.624	0.609	-0.025
11	FH2848	189	4	3.308	0.714	0.698	-0.024
12	INRA21	189	3	1.651	0.360	0.394	0.087
13	INU005	189	5	2.662	0.646	0.624	-0.034
14	INU030	189	4	2.398	0.603	0.583	-0.035
15	INU055	189	4	1.484	0.328	0.326	-0.006
16	LEI004	189	5	1.556	0.302	0.357	0.156
17	REN105L03	189	5	3.721	0.709	0.731	0.030
18	REN162C04	189	4	3.024	0.630	0.669	0.059
19	REN169D01	189	6	1.519	0.354	0.342	-0.037
20	REN169O18	189	6	2.548	0.630	0.608	-0.036
21	REN247M23	189	6	1.713	0.407	0.416	0.021
22	REN54P11	189	7	2.447	0.571	0.591	0.034
23	REN64E19	189	4	1.829	0.481	0.453	-0.062
24	VGL0760	189	9	2.302	0.630	0.566	-0.113
25	VGL0910	189	9	2.172	0.529	0.540	0.020
26	VGL1063	189	12	5.005	0.836	0.800	-0.045
27	VGL1165	189	11	2.406	0.577	0.584	0.013
28	VGL1828	189	7	3.383	0.735	0.704	-0.044
29	VGL2009	189	5	1.740	0.397	0.425	0.067
30	VGL2409	189	6	2.305	0.534	0.566	0.056
31	VGL2918	189	7	1.799	0.423	0.444	0.047
32	VGL3008	189	7	2.656	0.661	0.623	-0.061
33	VGL3235	189	8	4.596	0.778	0.782	0.006

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	189	5	2.634	0.667	0.620	-0.075
2	DLA I-4ACA	189	5	2.618	0.667	0.618	-0.079
3	DLA I-4BCT	189	5	2.506	0.640	0.601	-0.065
4	DLA1131	189	5	2.032	0.540	0.508	-0.063
5	5ACA	189	5	2.073	0.534	0.518	-0.033
6	5ACT	189	4	2.611	0.661	0.617	-0.072
7	5BCA	189	4	1.374	0.280	0.272	-0.031

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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