Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Dec 9, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesBernese Mountain Dog (n=144)
1006387 375 293 1800.073
1016382 371 277 1780.045
1030380 373 293 1780.010
1068380 373 287 1810.066
1094395 375 277 1760.142
1121380 371 277 1830.094
1160386 369 289 1760.545
1221380 365 293 1800.017
1256386 365 281 1800.003
1267386 375 277 1760.003

DLA Class II Haplotype Frequencies

DLA2 #STR typesBernese Mountain Dog (n=144)
2001343 324 2840.010
2005339 322 2800.146
2007351 327 2800.080
2012345 322 2800.003
2021339 324 2680.045
2024343 323 2800.535
2053343 324 2800.066
2071339 322 2860.094
2118347 327 2800.017
2134343 323 2680.003

Allele Frequencies

#Locus NameAlleleBernese Mountain Dog (n=144)
1AHT121 800.003
960.045
980.524
1000.111
1020.271
1040.014
1060.003
1080.028
2AHT137 1310.406
1370.281
1410.021
1470.073
1490.181
1530.038
3AHTH130 1210.017
1230.517
1270.063
1290.153
1390.247
1430.003
4AHTh171-A 2190.514
2250.163
2350.323
5AHTh260 2400.028
2440.257
2460.205
2500.080
2520.278
2540.139
2560.014
6AHTk211 870.816
910.045
930.080
970.056
990.003
7AHTk253 2860.174
2880.417
2900.125
2920.285
8C22.279 1160.153
1180.260
1240.587
9FH2001 1320.538
1360.097
1400.111
1440.017
1480.017
1520.219
10FH2054 1480.007
1520.149
1560.583
1600.017
1640.118
1680.125
11FH2848 2340.340
2380.080
2420.378
2440.201
12INRA21 950.788
1010.045
1030.167
13INU005 1240.035
1260.340
1280.490
1300.135
14INU030 1440.483
1460.087
1500.406
1520.024
15INU055 2100.806
2120.069
2140.003
2180.122
16LEI004 850.028
950.806
1070.135
1090.007
1110.024
17REN105L03 2290.132
2310.302
2330.010
2370.253
2410.302
18REN162C04 2020.226
2040.181
2060.472
2080.122
19REN169D01 2020.003
2120.021
2160.063
2180.104
2200.795
2220.014
20REN169O18 1600.014
1620.389
1640.059
1660.003
1680.472
1700.063
21REN247M23 2680.031
2700.736
2720.066
2740.097
2760.010
2780.059
22REN54P11 2220.618
2260.063
2280.101
2320.045
2340.014
2360.014
2380.146
23REN64E19 1390.014
1450.708
1470.094
1530.184
24VGL0760 120.003
130.219
140.618
19.20.003
20.20.028
21.20.014
22.20.090
23.20.007
24.20.017
25VGL0910 120.632
130.007
17.10.003
18.10.028
19.10.052
20.10.010
21.10.097
22.10.153
23.10.017
26VGL1063 80.153
120.167
130.035
140.260
150.028
160.038
170.003
180.028
190.260
200.024
210.003
27VGL1165 150.035
160.003
170.003
180.132
210.608
260.118
270.007
280.066
300.024
310.003
28VGL1828 140.170
150.118
160.188
170.038
190.031
200.451
210.003
29VGL2009 100.024
130.066
140.163
150.740
160.007
30VGL2409 130.587
140.003
170.101
180.299
190.010
31VGL2918 120.007
130.729
140.212
150.014
160.007
17.30.003
19.30.028
32VGL3008 130.010
150.444
160.031
170.031
180.417
190.038
200.028
33VGL3235 130.128
140.295
150.010
160.295
170.149
180.059
190.063

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

  NNaNeHoHeF
Mean1445.8482.6490.5780.5770.003
 SE 0.3430.1620.0260.0240.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

  NNaNeHoHeF
Mean1444.7142.3080.5630.543-0.033
 SE 0.1710.1760.0490.0460.007

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#LocusNNaNeHoHeF
1AHT12114482.7500.6110.6360.040
2AHT13714463.5220.7080.7160.011
3AHTH13014462.8090.5630.6440.127
4AHTh171-A14432.5320.6180.605-0.022
5AHTh26014474.7220.7990.788-0.013
6AHTk21114451.4760.3190.3230.010
7AHTk25314443.3280.6460.7000.077
8C22.27914432.2960.5560.5650.016
9FH200114462.7790.6940.640-0.085
10FH205414462.5480.6320.608-0.040
11FH284814443.2680.7220.694-0.041
12INRA2114431.5360.3330.3490.045
13INU00514442.6660.6670.625-0.067
14INU03014442.4620.6180.594-0.041
15INU05514441.4960.3260.3310.015
16LEI00414451.4960.2850.3310.141
17REN105L0314453.7840.7500.736-0.019
18REN162C0414443.1120.6250.6790.079
19REN169D0114461.5440.3610.352-0.025
20REN169O1814462.6190.6460.618-0.045
21REN247M2314461.7850.4170.4400.053
22REN54P1114472.3820.5630.5800.031
23REN64E1914441.8360.4720.455-0.037
24VGL076014492.2760.6180.561-0.102
25VGL091014492.2930.5630.5640.002
26VGL1063144115.2200.8470.808-0.048
27VGL1165144102.4580.5830.5930.017
28VGL182814473.5180.7780.716-0.087
29VGL200914451.7280.3820.4210.094
30VGL240914452.2530.5210.5560.064
31VGL291814471.7310.4170.4220.014
32VGL300814472.6640.6670.625-0.067
33VGL323514474.5350.7780.7790.002

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#LocusNNaNeHoHeF
1DLA I-3CCA14452.7210.6600.632-0.043
2DLA I-4ACA14452.6980.6670.629-0.059
3DLA I-4BCT14452.5460.6250.607-0.029
4DLA113114451.9900.5210.498-0.047
55ACA14452.1480.5420.535-0.013
65ACT14442.6810.6530.627-0.041
75BCA14441.3720.2710.2710.000