Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Feb 3, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=188)
1006	387 375 293 180	0.080
1016	382 371 277 178	0.043
1030	380 373 293 178	0.013
1068	380 373 287 181	0.069
1094	395 375 277 176	0.122
1121	380 371 277 183	0.096
1160	386 369 289 176	0.556
1221	380 365 293 180	0.013
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=188)
2001	343 324 284	0.013
2005	339 322 280	0.125
2007	351 327 280	0.085
2012	345 322 280	0.003
2021	339 324 268	0.043
2024	343 323 280	0.551
2053	343 324 280	0.069
2071	339 322 286	0.096
2118	347 327 280	0.013
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=188)
1	AHT121	80	0.003
		96	0.048
		98	0.561
		100	0.101
		102	0.242
		104	0.019
		106	0.003
		108	0.024
2	AHT137	131	0.407
		137	0.279
		141	0.027
		147	0.066
		149	0.189
		153	0.032
3	AHTH130	121	0.013
		123	0.495
		127	0.061
		129	0.165
		135	0.005
		139	0.258
		143	0.003
4	AHTh171-A	219	0.513
		225	0.154
		235	0.332
5	AHTh260	240	0.035
		244	0.258
		246	0.207
		250	0.082
		252	0.285
		254	0.120
		256	0.013
6	AHTk211	87	0.819
		91	0.040
		93	0.080
		97	0.059
		99	0.003
7	AHTk253	286	0.154
		288	0.407
		290	0.138
		292	0.301
8	C22.279	116	0.133
		118	0.255
		124	0.612
9	FH2001	132	0.556
		136	0.082
		140	0.106
		144	0.016
		148	0.021
		152	0.218
10	FH2054	148	0.005
		152	0.154
		156	0.582
		160	0.021
		164	0.120
		168	0.117
11	FH2848	234	0.343
		238	0.085
		242	0.372
		244	0.199
12	INRA21	95	0.753
		101	0.064
		103	0.184
13	INU005	124	0.029
		126	0.316
		128	0.505
		130	0.146
		132	0.003
14	INU030	144	0.513
		146	0.082
		150	0.386
		152	0.019
15	INU055	210	0.811
		212	0.064
		214	0.005
		218	0.120
16	LEI004	85	0.037
		95	0.790
		107	0.136
		109	0.005
		111	0.032
17	REN105L03	229	0.130
		231	0.327
		233	0.008
		237	0.234
		241	0.301
18	REN162C04	202	0.210
		204	0.184
		206	0.487
		208	0.120
19	REN169D01	202	0.003
		212	0.016
		216	0.064
		218	0.104
		220	0.803
		222	0.011
20	REN169O18	160	0.011
		162	0.420
		164	0.053
		166	0.003
		168	0.457
		170	0.056
21	REN247M23	268	0.032
		270	0.753
		272	0.061
		274	0.082
		276	0.011
		278	0.061
22	REN54P11	222	0.604
		226	0.061
		228	0.096
		232	0.051
		234	0.011
		236	0.016
		238	0.162
23	REN64E19	139	0.011
		145	0.707
		147	0.093
		153	0.189
24	VGL0760	12	0.003
		13	0.223
		14	0.612
		19.2	0.003
		20.2	0.027
		21.2	0.011
		22.2	0.096
		23.2	0.008
		24.2	0.019
25	VGL0910	12	0.652
		13	0.005
		17.1	0.003
		18.1	0.021
		19.1	0.053
		20.1	0.008
		21.1	0.112
		22.1	0.133
		23.1	0.013
26	VGL1063	8	0.149
		12	0.162
		13	0.032
		14	0.290
		15	0.024
		16	0.035
		17	0.003
		18	0.027
		19	0.250
		20	0.021
		21	0.003
		22	0.005
27	VGL1165	15	0.029
		16	0.003
		17	0.003
		18	0.125
		20	0.005
		21	0.617
		26	0.122
		27	0.005
		28	0.061
		30	0.027
		31	0.003
28	VGL1828	14	0.168
		15	0.109
		16	0.191
		17	0.037
		19	0.027
		20	0.465
		21	0.003
29	VGL2009	10	0.027
		13	0.074
		14	0.152
		15	0.739
		16	0.008
30	VGL2409	13	0.577
		14	0.003
		16	0.005
		17	0.101
		18	0.298
		19	0.016
31	VGL2918	12	0.008
		13	0.715
		14	0.221
		15	0.016
		16	0.008
		17.3	0.003
		19.3	0.029
32	VGL3008	13	0.011
		15	0.444
		16	0.032
		17	0.024
		18	0.418
		19	0.040
		20	0.032
33	VGL3235	13	0.136
		14	0.282
		15	0.011
		16	0.301
		17	0.152
		18	0.048
		19	0.066
		20	0.005

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	188	6.030	2.626	0.574	0.576	0.007
	SE		0.370	0.158	0.025	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	188	4.714	2.274	0.573	0.538	-0.062
	SE		0.171	0.166	0.049	0.044	0.007

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	188	8	2.584	0.596	0.613	0.028
2	AHT137	188	6	3.504	0.681	0.715	0.047
3	AHTH130	188	7	2.921	0.606	0.658	0.078
4	AHTh171-A	188	3	2.514	0.628	0.602	-0.042
5	AHTh260	188	7	4.693	0.798	0.787	-0.014
6	AHTk211	188	5	1.465	0.293	0.318	0.079
7	AHTk253	188	4	3.346	0.670	0.701	0.044
8	C22.279	188	3	2.188	0.548	0.543	-0.009
9	FH2001	188	6	2.664	0.670	0.625	-0.073
10	FH2054	188	6	2.554	0.622	0.608	-0.023
11	FH2848	188	4	3.296	0.718	0.697	-0.031
12	INRA21	188	3	1.655	0.362	0.396	0.086
13	INU005	188	5	2.647	0.644	0.622	-0.034
14	INU030	188	4	2.385	0.601	0.581	-0.035
15	INU055	188	4	1.478	0.324	0.324	-0.003
16	LEI004	188	5	1.551	0.298	0.355	0.161
17	REN105L03	188	5	3.715	0.707	0.731	0.032
18	REN162C04	188	4	3.039	0.633	0.671	0.057
19	REN169D01	188	6	1.514	0.351	0.340	-0.034
20	REN169O18	188	6	2.552	0.628	0.608	-0.032
21	REN247M23	188	6	1.718	0.410	0.418	0.020
22	REN54P11	188	7	2.459	0.574	0.593	0.032
23	REN64E19	188	4	1.835	0.484	0.455	-0.064
24	VGL0760	188	9	2.301	0.628	0.565	-0.110
25	VGL0910	188	9	2.182	0.532	0.542	0.018
26	VGL1063	188	12	5.024	0.835	0.801	-0.043
27	VGL1165	188	11	2.400	0.574	0.583	0.015
28	VGL1828	188	7	3.386	0.734	0.705	-0.042
29	VGL2009	188	5	1.736	0.394	0.424	0.072
30	VGL2409	188	6	2.313	0.537	0.568	0.054
31	VGL2918	188	7	1.780	0.420	0.438	0.041
32	VGL3008	188	7	2.660	0.660	0.624	-0.057
33	VGL3235	188	8	4.587	0.777	0.782	0.007

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	188	5	2.647	0.670	0.622	-0.077
2	DLA I-4ACA	188	5	2.631	0.670	0.620	-0.081
3	DLA I-4BCT	188	5	2.517	0.644	0.603	-0.068
4	DLA1131	188	5	2.040	0.543	0.510	-0.064
5	5ACA	188	5	2.080	0.537	0.519	-0.035
6	5ACT	188	4	2.623	0.665	0.619	-0.075
7	5BCA	188	4	1.376	0.282	0.273	-0.031

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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