Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesBernese Mountain Dog (n=133)
1006387 375 293 1800.071
1016382 371 277 1780.045
1030380 373 293 1780.011
1068380 373 287 1810.064
1094395 375 277 1760.143
1121380 371 277 1830.083
1160386 369 289 1760.560
1221380 365 293 1800.015
1256386 365 281 1800.004
1267386 375 277 1760.004

DLA Class II Haplotype Frequencies

DLA2 #STR typesBernese Mountain Dog (n=133)
2001343 324 2840.011
2005339 322 2800.147
2007351 327 2800.079
2012345 322 2800.004
2021339 324 2680.045
2024343 323 2800.549
2053343 324 2800.064
2071339 322 2860.083
2118347 327 2800.015
2134343 323 2680.004

Allele Frequencies

#Locus NameAlleleBernese Mountain Dog (n=133)
1AHT121 800.004
960.049
980.530
1000.109
1020.263
1040.011
1060.004
1080.030
2AHT137 1310.391
1370.282
1410.023
1470.079
1490.188
1530.038
3AHTH130 1210.019
1230.504
1270.060
1290.162
1390.252
1430.004
4AHTh171-A 2190.515
2250.158
2350.327
5AHTh260 2400.030
2440.252
2460.211
2500.079
2520.278
2540.135
2560.015
6AHTk211 870.820
910.049
930.075
970.053
990.004
7AHTk253 2860.162
2880.417
2900.128
2920.293
8C22.279 1160.150
1180.263
1240.586
9FH2001 1320.538
1360.102
1400.105
1440.019
1480.019
1520.218
10FH2054 1480.008
1520.139
1560.590
1600.019
1640.120
1680.124
11FH2848 2340.350
2380.083
2420.380
2440.188
12INRA21 950.778
1010.045
1030.177
13INU005 1240.038
1260.342
1280.489
1300.132
14INU030 1440.481
1460.086
1500.406
1520.026
15INU055 2100.797
2120.071
2140.004
2180.128
16LEI004 850.026
950.797
1070.143
1090.008
1110.026
17REN105L03 2290.117
2310.301
2330.011
2370.263
2410.308
18REN162C04 2020.241
2040.173
2060.462
2080.124
19REN169D01 2020.004
2120.019
2160.053
2180.105
2200.808
2220.011
20REN169O18 1600.015
1620.380
1640.060
1660.004
1680.481
1700.060
21REN247M23 2680.034
2700.741
2720.064
2740.105
2760.011
2780.045
22REN54P11 2220.609
2260.060
2280.105
2320.045
2340.015
2360.015
2380.150
23REN64E19 1390.015
1450.703
1470.090
1530.192
24VGL0760 130.214
140.613
19.20.004
20.20.030
21.20.015
22.20.098
23.20.008
24.20.019
25VGL0910 120.639
130.008
17.10.004
18.10.026
19.10.053
20.10.011
21.10.094
22.10.150
23.10.015
26VGL1063 80.143
120.165
130.038
140.267
150.030
160.038
170.004
180.030
190.256
200.026
210.004
27VGL1165 150.034
160.004
170.004
180.132
210.617
260.113
270.004
280.064
300.026
310.004
28VGL1828 140.169
150.117
160.192
170.041
190.030
200.447
210.004
29VGL2009 100.026
130.068
140.162
150.737
160.008
30VGL2409 130.583
140.004
170.109
180.293
190.011
31VGL2918 120.008
130.722
140.214
150.015
160.008
17.30.004
19.30.030
32VGL3008 130.011
150.440
160.034
170.030
180.414
190.041
200.030
33VGL3235 130.128
140.274
150.011
160.301
170.158
180.064
190.064

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

  NNaNeHoHeF
Mean1335.8182.6610.5770.5790.007
 SE 0.3360.1640.0260.0240.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

  NNaNeHoHeF
Mean1334.7142.2420.5550.530-0.047
 SE 0.1710.1700.0490.0460.004

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#LocusNNaNeHoHeF
1AHT12113382.7350.6020.6340.052
2AHT13713363.6250.7220.7240.003
3AHTH13013362.8790.5710.6530.124
4AHTh171-A13332.5180.5940.6030.015
5AHTh26013374.7430.8050.789-0.019
6AHTk21113351.4650.3160.3180.005
7AHTk25313343.3050.6390.6970.084
8C22.27913332.2950.5560.5640.014
9FH200113362.7880.6840.641-0.067
10FH205413362.5130.6240.602-0.037
11FH284813343.2410.7220.691-0.044
12INRA2113331.5650.3460.3610.042
13INU00513342.6690.6540.625-0.046
14INU03013342.4720.6170.595-0.035
15INU05513341.5230.3380.3430.015
16LEI00413351.5220.3010.3430.123
17REN105L0313353.7250.7440.732-0.018
18REN162C0413343.1550.6240.6830.086
19REN169D0113361.4980.3380.332-0.018
20REN169O1813362.6100.6390.617-0.036
21REN247M2313361.7640.3980.4330.080
22REN54P1113372.4350.5640.5890.043
23REN64E1913341.8540.4740.461-0.028
24VGL076013382.3120.6240.567-0.100
25VGL091013392.2530.5560.556-0.000
26VGL1063133115.2710.8350.810-0.030
27VGL1165133102.4030.5790.5840.008
28VGL182813373.5500.7890.718-0.099
29VGL200913351.7410.3910.4260.081
30VGL240913352.2850.5340.5620.051
31VGL291813371.7600.4210.4320.025
32VGL300813372.7080.6540.631-0.037
33VGL323513374.6440.7970.785-0.016

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#LocusNNaNeHoHeF
1DLA I-3CCA13352.6340.6470.620-0.042
2DLA I-4ACA13352.6060.6540.616-0.061
3DLA I-4BCT13352.4830.6240.597-0.045
4DLA113113351.9170.5040.478-0.053
55ACA13352.1010.5490.524-0.047
65ACT13342.6110.6470.617-0.048
75BCA13341.3440.2630.256-0.028