Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Nov 12, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=160)
1006	387 375 293 180	0.078
1016	382 371 277 178	0.041
1030	380 373 293 178	0.013
1068	380 373 287 181	0.063
1094	395 375 277 176	0.138
1121	380 371 277 183	0.103
1160	386 369 289 176	0.541
1221	380 365 293 180	0.016
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=160)
2001	343 324 284	0.013
2005	339 322 280	0.141
2007	351 327 280	0.084
2012	345 322 280	0.003
2021	339 324 268	0.041
2024	343 323 280	0.534
2053	343 324 280	0.063
2071	339 322 286	0.103
2118	347 327 280	0.016
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=160)
1	AHT121	80	0.003
		96	0.047
		98	0.541
		100	0.106
		102	0.250
		104	0.022
		106	0.003
		108	0.028
2	AHT137	131	0.416
		137	0.272
		141	0.028
		147	0.069
		149	0.181
		153	0.034
3	AHTH130	121	0.016
		123	0.522
		127	0.063
		129	0.156
		135	0.006
		139	0.234
		143	0.003
4	AHTh171-A	219	0.513
		225	0.163
		235	0.325
5	AHTh260	240	0.031
		244	0.266
		246	0.209
		250	0.078
		252	0.272
		254	0.128
		256	0.016
6	AHTk211	87	0.819
		91	0.047
		93	0.075
		97	0.056
		99	0.003
7	AHTk253	286	0.169
		288	0.413
		290	0.119
		292	0.300
8	C22.279	116	0.144
		118	0.256
		124	0.600
9	FH2001	132	0.541
		136	0.091
		140	0.109
		144	0.016
		148	0.016
		152	0.228
10	FH2054	148	0.006
		152	0.147
		156	0.591
		160	0.019
		164	0.109
		168	0.128
11	FH2848	234	0.334
		238	0.084
		242	0.394
		244	0.188
12	INRA21	95	0.772
		101	0.050
		103	0.178
13	INU005	124	0.034
		126	0.344
		128	0.475
		130	0.144
		132	0.003
14	INU030	144	0.488
		146	0.088
		150	0.403
		152	0.022
15	INU055	210	0.797
		212	0.075
		214	0.006
		218	0.122
16	LEI004	85	0.038
		95	0.797
		107	0.128
		109	0.006
		111	0.031
17	REN105L03	229	0.119
		231	0.297
		233	0.009
		237	0.259
		241	0.316
18	REN162C04	202	0.225
		204	0.178
		206	0.481
		208	0.116
19	REN169D01	202	0.003
		212	0.019
		216	0.063
		218	0.100
		220	0.803
		222	0.013
20	REN169O18	160	0.013
		162	0.406
		164	0.056
		166	0.003
		168	0.463
		170	0.059
21	REN247M23	268	0.031
		270	0.738
		272	0.063
		274	0.094
		276	0.009
		278	0.066
22	REN54P11	222	0.616
		226	0.059
		228	0.103
		232	0.041
		234	0.013
		236	0.016
		238	0.153
23	REN64E19	139	0.013
		145	0.713
		147	0.091
		153	0.184
24	VGL0760	12	0.003
		13	0.219
		14	0.613
		19.2	0.003
		20.2	0.028
		21.2	0.013
		22.2	0.094
		23.2	0.009
		24.2	0.019
25	VGL0910	12	0.638
		13	0.006
		17.1	0.003
		18.1	0.025
		19.1	0.056
		20.1	0.009
		21.1	0.106
		22.1	0.141
		23.1	0.016
26	VGL1063	8	0.156
		12	0.175
		13	0.034
		14	0.269
		15	0.028
		16	0.034
		17	0.003
		18	0.028
		19	0.247
		20	0.022
		21	0.003
27	VGL1165	15	0.034
		16	0.003
		17	0.003
		18	0.122
		20	0.003
		21	0.622
		26	0.116
		27	0.006
		28	0.066
		30	0.022
		31	0.003
28	VGL1828	14	0.172
		15	0.109
		16	0.194
		17	0.038
		19	0.031
		20	0.453
		21	0.003
29	VGL2009	10	0.028
		13	0.075
		14	0.156
		15	0.734
		16	0.006
30	VGL2409	13	0.584
		14	0.003
		16	0.006
		17	0.097
		18	0.300
		19	0.009
31	VGL2918	12	0.006
		13	0.738
		14	0.203
		15	0.013
		16	0.006
		17.3	0.003
		19.3	0.031
32	VGL3008	13	0.013
		15	0.425
		16	0.031
		17	0.028
		18	0.428
		19	0.041
		20	0.034
33	VGL3235	13	0.131
		14	0.288
		15	0.009
		16	0.303
		17	0.153
		18	0.056
		19	0.059

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	160	5.970	2.637	0.578	0.577	0.003
	SE		0.352	0.160	0.026	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	160	4.714	2.321	0.572	0.546	-0.045
	SE		0.171	0.173	0.048	0.044	0.005

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	160	8	2.706	0.606	0.630	0.038
2	AHT137	160	6	3.494	0.694	0.714	0.028
3	AHTH130	160	7	2.810	0.588	0.644	0.088
4	AHTh171-A	160	3	2.534	0.625	0.605	-0.033
5	AHTh260	160	7	4.716	0.800	0.788	-0.015
6	AHTk211	160	5	1.468	0.294	0.319	0.078
7	AHTk253	160	4	3.303	0.625	0.697	0.104
8	C22.279	160	3	2.241	0.544	0.554	0.018
9	FH2001	160	6	2.740	0.700	0.635	-0.102
10	FH2054	160	6	2.505	0.619	0.601	-0.030
11	FH2848	160	4	3.235	0.713	0.691	-0.031
12	INRA21	160	3	1.587	0.325	0.370	0.122
13	INU005	160	5	2.735	0.663	0.634	-0.044
14	INU030	160	4	2.449	0.625	0.592	-0.056
15	INU055	160	4	1.525	0.344	0.344	0.002
16	LEI004	160	5	1.529	0.306	0.346	0.115
17	REN105L03	160	5	3.714	0.731	0.731	-0.001
18	REN162C04	160	4	3.055	0.638	0.673	0.052
19	REN169D01	160	6	1.516	0.350	0.341	-0.028
20	REN169O18	160	6	2.592	0.631	0.614	-0.028
21	REN247M23	160	6	1.779	0.425	0.438	0.030
22	REN54P11	160	7	2.389	0.575	0.581	0.011
23	REN64E19	160	4	1.818	0.469	0.450	-0.042
24	VGL0760	160	9	2.308	0.619	0.567	-0.092
25	VGL0910	160	9	2.264	0.569	0.558	-0.019
26	VGL1063	160	11	5.191	0.844	0.807	-0.045
27	VGL1165	160	11	2.375	0.575	0.579	0.007
28	VGL1828	160	7	3.487	0.769	0.713	-0.078
29	VGL2009	160	5	1.754	0.387	0.430	0.098
30	VGL2409	160	6	2.267	0.544	0.559	0.027
31	VGL2918	160	7	1.705	0.413	0.414	0.003
32	VGL3008	160	7	2.712	0.681	0.631	-0.079
33	VGL3235	160	7	4.505	0.775	0.778	0.004

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	160	5	2.727	0.669	0.633	-0.056
2	DLA I-4ACA	160	5	2.702	0.669	0.630	-0.062
3	DLA I-4BCT	160	5	2.553	0.638	0.608	-0.048
4	DLA1131	160	5	2.036	0.531	0.509	-0.044
5	5ACA	160	5	2.158	0.550	0.537	-0.025
6	5ACT	160	4	2.679	0.663	0.627	-0.057
7	5BCA	160	4	1.390	0.288	0.281	-0.024

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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