Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=154)
1006	387 375 293 180	0.081
1016	382 371 277 178	0.042
1030	380 373 293 178	0.013
1068	380 373 287 181	0.065
1094	395 375 277 176	0.143
1121	380 371 277 183	0.101
1160	386 369 289 176	0.529
1221	380 365 293 180	0.016
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=154)
2001	343 324 284	0.013
2005	339 322 280	0.146
2007	351 327 280	0.088
2012	345 322 280	0.003
2021	339 324 268	0.042
2024	343 323 280	0.523
2053	343 324 280	0.065
2071	339 322 286	0.101
2118	347 327 280	0.016
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=154)
1	AHT121	80	0.003
		96	0.045
		98	0.529
		100	0.107
		102	0.260
		104	0.023
		106	0.003
		108	0.029
2	AHT137	131	0.419
		137	0.276
		141	0.023
		147	0.068
		149	0.179
		153	0.036
3	AHTH130	121	0.016
		123	0.523
		127	0.065
		129	0.153
		135	0.003
		139	0.237
		143	0.003
4	AHTh171-A	219	0.519
		225	0.166
		235	0.315
5	AHTh260	240	0.029
		244	0.269
		246	0.201
		250	0.081
		252	0.273
		254	0.133
		256	0.013
6	AHTk211	87	0.818
		91	0.042
		93	0.078
		97	0.058
		99	0.003
7	AHTk253	286	0.166
		288	0.412
		290	0.117
		292	0.305
8	C22.279	116	0.149
		118	0.250
		124	0.601
9	FH2001	132	0.542
		136	0.094
		140	0.107
		144	0.016
		148	0.016
		152	0.224
10	FH2054	148	0.006
		152	0.153
		156	0.581
		160	0.019
		164	0.114
		168	0.127
11	FH2848	234	0.328
		238	0.081
		242	0.396
		244	0.195
12	INRA21	95	0.782
		101	0.042
		103	0.175
13	INU005	124	0.036
		126	0.338
		128	0.481
		130	0.143
		132	0.003
14	INU030	144	0.484
		146	0.084
		150	0.409
		152	0.023
15	INU055	210	0.792
		212	0.075
		214	0.006
		218	0.127
16	LEI004	85	0.036
		95	0.795
		107	0.130
		109	0.006
		111	0.032
17	REN105L03	229	0.123
		231	0.302
		233	0.010
		237	0.263
		241	0.302
18	REN162C04	202	0.231
		204	0.179
		206	0.477
		208	0.114
19	REN169D01	202	0.003
		212	0.019
		216	0.062
		218	0.101
		220	0.802
		222	0.013
20	REN169O18	160	0.013
		162	0.399
		164	0.058
		166	0.003
		168	0.464
		170	0.062
21	REN247M23	268	0.032
		270	0.737
		272	0.062
		274	0.094
		276	0.010
		278	0.065
22	REN54P11	222	0.620
		226	0.062
		228	0.101
		232	0.042
		234	0.013
		236	0.016
		238	0.146
23	REN64E19	139	0.013
		145	0.708
		147	0.094
		153	0.185
24	VGL0760	12	0.003
		13	0.218
		14	0.620
		19.2	0.003
		20.2	0.029
		21.2	0.013
		22.2	0.091
		23.2	0.006
		24.2	0.016
25	VGL0910	12	0.633
		13	0.006
		17.1	0.003
		18.1	0.026
		19.1	0.052
		20.1	0.010
		21.1	0.107
		22.1	0.146
		23.1	0.016
26	VGL1063	8	0.159
		12	0.172
		13	0.032
		14	0.263
		15	0.029
		16	0.036
		17	0.003
		18	0.029
		19	0.250
		20	0.023
		21	0.003
27	VGL1165	15	0.036
		16	0.003
		17	0.003
		18	0.127
		20	0.003
		21	0.614
		26	0.114
		27	0.006
		28	0.068
		30	0.023
		31	0.003
28	VGL1828	14	0.169
		15	0.114
		16	0.195
		17	0.039
		19	0.032
		20	0.448
		21	0.003
29	VGL2009	10	0.023
		13	0.068
		14	0.156
		15	0.747
		16	0.006
30	VGL2409	13	0.588
		14	0.003
		16	0.003
		17	0.097
		18	0.299
		19	0.010
31	VGL2918	12	0.006
		13	0.734
		14	0.205
		15	0.013
		16	0.006
		17.3	0.003
		19.3	0.032
32	VGL3008	13	0.010
		15	0.432
		16	0.032
		17	0.029
		18	0.425
		19	0.042
		20	0.029
33	VGL3235	13	0.123
		14	0.299
		15	0.010
		16	0.299
		17	0.153
		18	0.055
		19	0.062

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	154	5.970	2.639	0.579	0.577	0.001
	SE		0.352	0.161	0.026	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	154	4.714	2.366	0.582	0.553	-0.048
	SE		0.171	0.182	0.050	0.046	0.007

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	154	8	2.759	0.617	0.638	0.032
2	AHT137	154	6	3.449	0.695	0.710	0.022
3	AHTH130	154	7	2.800	0.571	0.643	0.111
4	AHTh171-A	154	3	2.522	0.623	0.604	-0.033
5	AHTh260	154	7	4.698	0.805	0.787	-0.023
6	AHTk211	154	5	1.469	0.305	0.319	0.044
7	AHTk253	154	4	3.287	0.623	0.696	0.104
8	C22.279	154	3	2.244	0.545	0.554	0.016
9	FH2001	154	6	2.739	0.695	0.635	-0.094
10	FH2054	154	6	2.561	0.643	0.610	-0.055
11	FH2848	154	4	3.237	0.714	0.691	-0.034
12	INRA21	154	3	1.551	0.325	0.355	0.086
13	INU005	154	5	2.728	0.662	0.633	-0.046
14	INU030	154	4	2.445	0.623	0.591	-0.055
15	INU055	154	4	1.540	0.351	0.351	0.000
16	LEI004	154	5	1.534	0.312	0.348	0.104
17	REN105L03	154	5	3.748	0.740	0.733	-0.010
18	REN162C04	154	4	3.070	0.630	0.674	0.066
19	REN169D01	154	6	1.521	0.351	0.342	-0.024
20	REN169O18	154	6	2.615	0.636	0.618	-0.030
21	REN247M23	154	6	1.782	0.422	0.439	0.038
22	REN54P11	154	7	2.369	0.565	0.578	0.023
23	REN64E19	154	4	1.837	0.474	0.456	-0.040
24	VGL0760	154	9	2.265	0.610	0.559	-0.093
25	VGL0910	154	9	2.286	0.571	0.563	-0.016
26	VGL1063	154	11	5.231	0.844	0.809	-0.044
27	VGL1165	154	11	2.427	0.584	0.588	0.006
28	VGL1828	154	7	3.537	0.779	0.717	-0.086
29	VGL2009	154	5	1.703	0.370	0.413	0.104
30	VGL2409	154	6	2.251	0.539	0.556	0.030
31	VGL2918	154	7	1.719	0.416	0.418	0.007
32	VGL3008	154	7	2.688	0.675	0.628	-0.075
33	VGL3235	154	7	4.466	0.779	0.776	-0.004

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	154	5	2.800	0.682	0.643	-0.061
2	DLA I-4ACA	154	5	2.762	0.682	0.638	-0.069
3	DLA I-4BCT	154	5	2.608	0.649	0.617	-0.053
4	DLA1131	154	5	2.066	0.539	0.516	-0.044
5	5ACA	154	5	2.192	0.558	0.544	-0.027
6	5ACT	154	4	2.744	0.675	0.636	-0.062
7	5BCA	154	4	1.390	0.286	0.281	-0.019

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Connect with us on social media