Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=133)
1006	387 375 293 180	0.071
1016	382 371 277 178	0.045
1030	380 373 293 178	0.011
1068	380 373 287 181	0.064
1094	395 375 277 176	0.143
1121	380 371 277 183	0.083
1160	386 369 289 176	0.560
1221	380 365 293 180	0.015
1256	386 365 281 180	0.004
1267	386 375 277 176	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=133)
2001	343 324 284	0.011
2005	339 322 280	0.147
2007	351 327 280	0.079
2012	345 322 280	0.004
2021	339 324 268	0.045
2024	343 323 280	0.549
2053	343 324 280	0.064
2071	339 322 286	0.083
2118	347 327 280	0.015
2134	343 323 268	0.004

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=133)
1	AHT121	80	0.004
		96	0.049
		98	0.530
		100	0.109
		102	0.263
		104	0.011
		106	0.004
		108	0.030
2	AHT137	131	0.391
		137	0.282
		141	0.023
		147	0.079
		149	0.188
		153	0.038
3	AHTH130	121	0.019
		123	0.504
		127	0.060
		129	0.162
		139	0.252
		143	0.004
4	AHTh171-A	219	0.515
		225	0.158
		235	0.327
5	AHTh260	240	0.030
		244	0.252
		246	0.211
		250	0.079
		252	0.278
		254	0.135
		256	0.015
6	AHTk211	87	0.820
		91	0.049
		93	0.075
		97	0.053
		99	0.004
7	AHTk253	286	0.162
		288	0.417
		290	0.128
		292	0.293
8	C22.279	116	0.150
		118	0.263
		124	0.586
9	FH2001	132	0.538
		136	0.102
		140	0.105
		144	0.019
		148	0.019
		152	0.218
10	FH2054	148	0.008
		152	0.139
		156	0.590
		160	0.019
		164	0.120
		168	0.124
11	FH2848	234	0.350
		238	0.083
		242	0.380
		244	0.188
12	INRA21	95	0.778
		101	0.045
		103	0.177
13	INU005	124	0.038
		126	0.342
		128	0.489
		130	0.132
14	INU030	144	0.481
		146	0.086
		150	0.406
		152	0.026
15	INU055	210	0.797
		212	0.071
		214	0.004
		218	0.128
16	LEI004	85	0.026
		95	0.797
		107	0.143
		109	0.008
		111	0.026
17	REN105L03	229	0.117
		231	0.301
		233	0.011
		237	0.263
		241	0.308
18	REN162C04	202	0.241
		204	0.173
		206	0.462
		208	0.124
19	REN169D01	202	0.004
		212	0.019
		216	0.053
		218	0.105
		220	0.808
		222	0.011
20	REN169O18	160	0.015
		162	0.380
		164	0.060
		166	0.004
		168	0.481
		170	0.060
21	REN247M23	268	0.034
		270	0.741
		272	0.064
		274	0.105
		276	0.011
		278	0.045
22	REN54P11	222	0.609
		226	0.060
		228	0.105
		232	0.045
		234	0.015
		236	0.015
		238	0.150
23	REN64E19	139	0.015
		145	0.703
		147	0.090
		153	0.192
24	VGL0760	13	0.214
		14	0.613
		19.2	0.004
		20.2	0.030
		21.2	0.015
		22.2	0.098
		23.2	0.008
		24.2	0.019
25	VGL0910	12	0.639
		13	0.008
		17.1	0.004
		18.1	0.026
		19.1	0.053
		20.1	0.011
		21.1	0.094
		22.1	0.150
		23.1	0.015
26	VGL1063	8	0.143
		12	0.165
		13	0.038
		14	0.267
		15	0.030
		16	0.038
		17	0.004
		18	0.030
		19	0.256
		20	0.026
		21	0.004
27	VGL1165	15	0.034
		16	0.004
		17	0.004
		18	0.132
		21	0.617
		26	0.113
		27	0.004
		28	0.064
		30	0.026
		31	0.004
28	VGL1828	14	0.169
		15	0.117
		16	0.192
		17	0.041
		19	0.030
		20	0.447
		21	0.004
29	VGL2009	10	0.026
		13	0.068
		14	0.162
		15	0.737
		16	0.008
30	VGL2409	13	0.583
		14	0.004
		17	0.109
		18	0.293
		19	0.011
31	VGL2918	12	0.008
		13	0.722
		14	0.214
		15	0.015
		16	0.008
		17.3	0.004
		19.3	0.030
32	VGL3008	13	0.011
		15	0.440
		16	0.034
		17	0.030
		18	0.414
		19	0.041
		20	0.030
33	VGL3235	13	0.128
		14	0.274
		15	0.011
		16	0.301
		17	0.158
		18	0.064
		19	0.064

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	133	5.818	2.661	0.577	0.579	0.007
	SE		0.336	0.164	0.026	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	133	4.714	2.242	0.555	0.530	-0.047
	SE		0.171	0.170	0.049	0.046	0.004

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	133	8	2.735	0.602	0.634	0.052
2	AHT137	133	6	3.625	0.722	0.724	0.003
3	AHTH130	133	6	2.879	0.571	0.653	0.124
4	AHTh171-A	133	3	2.518	0.594	0.603	0.015
5	AHTh260	133	7	4.743	0.805	0.789	-0.019
6	AHTk211	133	5	1.465	0.316	0.318	0.005
7	AHTk253	133	4	3.305	0.639	0.697	0.084
8	C22.279	133	3	2.295	0.556	0.564	0.014
9	FH2001	133	6	2.788	0.684	0.641	-0.067
10	FH2054	133	6	2.513	0.624	0.602	-0.037
11	FH2848	133	4	3.241	0.722	0.691	-0.044
12	INRA21	133	3	1.565	0.346	0.361	0.042
13	INU005	133	4	2.669	0.654	0.625	-0.046
14	INU030	133	4	2.472	0.617	0.595	-0.035
15	INU055	133	4	1.523	0.338	0.343	0.015
16	LEI004	133	5	1.522	0.301	0.343	0.123
17	REN105L03	133	5	3.725	0.744	0.732	-0.018
18	REN162C04	133	4	3.155	0.624	0.683	0.086
19	REN169D01	133	6	1.498	0.338	0.332	-0.018
20	REN169O18	133	6	2.610	0.639	0.617	-0.036
21	REN247M23	133	6	1.764	0.398	0.433	0.080
22	REN54P11	133	7	2.435	0.564	0.589	0.043
23	REN64E19	133	4	1.854	0.474	0.461	-0.028
24	VGL0760	133	8	2.312	0.624	0.567	-0.100
25	VGL0910	133	9	2.253	0.556	0.556	-0.000
26	VGL1063	133	11	5.271	0.835	0.810	-0.030
27	VGL1165	133	10	2.403	0.579	0.584	0.008
28	VGL1828	133	7	3.550	0.789	0.718	-0.099
29	VGL2009	133	5	1.741	0.391	0.426	0.081
30	VGL2409	133	5	2.285	0.534	0.562	0.051
31	VGL2918	133	7	1.760	0.421	0.432	0.025
32	VGL3008	133	7	2.708	0.654	0.631	-0.037
33	VGL3235	133	7	4.644	0.797	0.785	-0.016

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	133	5	2.634	0.647	0.620	-0.042
2	DLA I-4ACA	133	5	2.606	0.654	0.616	-0.061
3	DLA I-4BCT	133	5	2.483	0.624	0.597	-0.045
4	DLA1131	133	5	1.917	0.504	0.478	-0.053
5	5ACA	133	5	2.101	0.549	0.524	-0.047
6	5ACT	133	4	2.611	0.647	0.617	-0.048
7	5BCA	133	4	1.344	0.263	0.256	-0.028

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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