Statistics and Breed-wide Allele Frequency - Biewer

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesBiewer (n=128)Biewer Yorshire Terrier (n=53)Biewer Terrier (n=201)Yorkshire Terrier (n=16)Biro Biewer (n=3)
1005389 371 277 1810.0270.0090.015----
1007380 372 281 1820.0040.009--0.03--
1008386 373 289 1820.008----0.06--
1012388 369 289 1880.2070.1510.2260.280.2
1014375 373 287 1780.0270.0090.0600.09--
1016382 371 277 1780.0230.0190.0120.03--
1019380 373 287 1850.0700.0850.0550.09--
1030380 373 293 1780.4570.3490.4950.310.5
1035386 373 277 184--0.009------
1040380 371 277 1860.1020.2080.077----
1043393 381 277 1830.0080.0090.012----
1046376 379 291 1800.031--0.025----
1068380 373 287 181--0.009------
1087380 371 277 1780.004--------
1092376 379 277 181--0.038--0.06--
1104386 373 289 1860.0120.0190.010----
1105382 379 277 1780.004------0.3
1115386 371 277 182----0.002----
1117376 373 277 180----0.002----
1118376 377 277 1800.0040.019------
1130380 373 287 1780.0080.009------
1131388 379 277 1810.0040.0470.0070.03--

DLA Class II Haplotype Frequencies

DLA2 #STR typesBiewer (n=128)Biewer Yorshire Terrier (n=53)Biewer Terrier (n=201)Yorkshire Terrier (n=16)Biro Biewer (n=3)
2003343 324 2820.2460.2080.2490.380.2
2005339 322 2800.0430.0090.025----
2013345 327 2840.0510.1420.065----
2016339 323 2840.0780.0940.0670.09--
2021339 324 2680.004--------
2023341 323 2820.4570.3490.4980.310.5
2037341 327 2800.0270.0090.0600.09--
2040345 327 2800.0660.0850.0250.03--
2044343 324 268--0.038--0.06--
2053343 324 280--0.009------
2074341 324 2840.0040.0190.002----
2080339 325 2760.0040.009--0.03--
2081343 322 2820.0120.0190.010----
2082339 325 268--0.009------
2083339 324 2820.004------0.3
2084339 323 2680.004--------

Allele Frequencies

#Locus NameAlleleBiewer (n=128)Biewer Yorshire Terrier (n=53)Biewer Terrier (n=201)Yorkshire Terrier (n=25)Biro Biewer (n=3)
1AHT121 92----0.0170.040.2
940.004--0.0120.06--
980.0980.1420.0950.20--
1000.2150.0660.1090.20--
1020.3010.3110.3430.120.7
1040.2070.3580.2310.08--
1060.023--0.0150.08--
1080.1170.0850.1270.20--
1100.0080.0280.0220.02--
1120.0270.0090.022----
122----0.002--0.2
124----0.002----
2AHT137 1310.2340.2740.2390.200.3
133------0.08--
1370.3360.2830.3180.40--
1390.1250.1230.119----
143--0.009------
147----0.0120.04--
1490.004--0.005----
1510.2500.2640.2440.20--
1530.0510.0470.0620.060.7
155------0.02--
3AHTH130 1170.012--0.012----
1190.3750.3870.3510.140.7
1210.1840.1510.0970.080.2
1230.0230.0750.0150.08--
125----0.0020.02--
1270.3160.2740.4080.240.2
1290.0820.1040.0950.40--
1310.0080.0090.0200.02--
133------0.02--
4AHTh171-A 2190.6450.7740.7090.500.3
2250.1990.0940.1370.120.5
227----0.0020.04--
2290.004--0.0020.04--
2310.1050.1130.1170.120.2
2330.0310.0190.0250.14--
2350.012--0.007----
2370.004----0.04--
5AHTh260 2380.0510.0750.0220.22--
240------0.02--
2420.0270.0190.0270.12--
2440.0940.0380.0700.020.2
2460.2620.2360.2690.360.3
2480.0820.0660.129----
2500.4840.5380.4780.260.5
254--0.0280.005----
6AHTk211 870.4880.5570.4800.210.7
890.020--0.0200.04--
910.4100.4340.3810.650.3
950.008--0.0500.06--
970.0740.0090.0700.04--
7AHTk253 2840.0430.0090.0570.020.3
2860.0510.0280.0550.02--
2880.2110.3400.2340.42--
2900.1410.2640.1340.24--
2920.5430.3580.5200.260.7
2940.012----0.04--
8C22.279 1160.1130.1130.0750.020.2
1180.0820.0380.0420.12--
1200.0040.0090.0100.04--
1220.0120.0090.0020.04--
1240.1840.1980.2090.04--
1260.3280.4150.4330.460.8
1280.2660.2170.2210.18--
1300.012--0.0070.10--
9FH2001 124------0.12--
1320.4960.4620.5100.400.2
136--0.009--0.02--
140----0.0100.12--
1440.0780.0940.0600.080.2
1480.4100.4060.4000.240.7
1520.0160.0090.0200.02--
156--0.019------
10FH2054 1480.2270.2550.1920.34--
1520.1250.0570.1470.260.5
1560.3360.4530.3580.320.5
1600.2030.1320.206----
1640.0660.0470.0720.02--
1680.0430.0570.0250.06--
11FH2848 2320.012--0.002----
2340.0900.0570.072----
2360.3280.3300.3380.24--
2380.1600.1320.1590.220.5
2400.3910.3960.3910.400.5
242----0.002----
2440.0200.0850.0350.14--
12INRA21 910.2070.1980.204--0.2
950.1800.1510.2090.420.3
970.3130.2640.1740.220.3
99--0.028--0.10--
1010.2930.3300.4000.260.2
1050.0080.0280.012----
13INU005 1060.0120.0570.0450.06--
1100.051--0.0370.10--
120----0.002----
1240.8240.7920.7840.561.0
1260.0550.0940.0350.08--
128----0.0120.02--
1300.020--0.0220.12--
1320.0390.0570.0620.04--
134------0.02--
14INU030 1440.2270.2550.2260.280.3
1460.0390.0280.022----
1480.0590.0850.0400.10--
1500.5230.5570.6440.420.5
1520.0700.0280.0100.080.2
1540.0820.0470.0570.10--
156------0.02--
15INU055 208------0.04--
2100.5270.5090.5870.460.3
2120.0310.0470.0320.06--
2140.1640.1320.1240.20--
2160.0550.0940.0700.02--
2180.2230.2170.1870.220.7
16LEI004 850.0780.1040.1090.18--
950.8200.8020.7490.700.8
970.0940.0940.1420.02--
101------0.02--
1050.004------0.2
1070.004----0.08--
17REN105L03 2290.012--------
2310.0230.0850.0400.08--
2330.3160.2360.3110.08--
2350.1020.1230.1420.08--
2370.3050.2360.2710.24--
2410.2420.3210.2360.501.0
247------0.02--
18REN162C04 1980.004----0.14--
2000.0270.0470.0600.06--
2020.1050.1040.0970.120.3
2040.0550.0750.0670.040.3
2060.3160.2830.2290.060.3
2080.0200.0190.0400.06--
2100.4730.4720.5070.52--
19REN169D01 2020.2030.2080.1540.160.2
210--0.0190.0150.08--
2120.3590.3680.4280.180.2
2160.2460.2830.2790.420.7
2200.1910.1230.1240.16--
20REN169O18 158------0.04--
1600.035--0.0270.16--
1620.1680.2170.1440.40--
1640.6520.4810.6740.301.0
1660.1020.1890.109----
1680.0200.0280.0370.02--
1700.0230.0850.0070.06--
172------0.02--
21REN247M23 2680.2540.2260.2090.24--
2700.0230.0570.0400.22--
2720.4220.4340.4150.320.2
276--------0.3
2780.3010.2830.3360.220.5
22REN54P11 2220.0160.1040.0220.04--
2240.008--0.005----
2260.1640.2170.2190.060.2
230------0.02--
2320.2460.1790.1670.340.2
2340.1050.0380.0870.020.3
2360.2810.3400.3380.500.3
2380.1800.1230.1620.02--
23REN64E19 1390.1680.2450.1340.220.7
1430.012--0.005----
1450.3980.2740.4600.06--
1470.3830.4530.3410.56--
1490.0200.0190.0300.040.3
1510.008--0.0070.02--
1530.008--0.0220.08--
1550.0040.009--0.02--
24VGL0760 120.2460.4430.2810.140.3
130.0080.0380.010----
140.0430.0280.040----
20.20.0310.0190.0370.040.3
21.20.3240.2450.3060.36--
22.20.0350.0280.0750.14--
23.20.1370.0750.1320.24--
24.20.1720.1230.1170.080.3
25.20.004--0.002----
25VGL0910 15.1------0.02--
16.10.0630.0280.1190.16--
17.10.004--0.0050.08--
18.10.0120.0090.0350.04--
190.0900.0660.035----
19.10.2230.3020.2640.100.3
200.0270.057--0.06--
20.10.0120.0090.0200.160.2
210.004--------
21.10.1760.1320.1940.080.3
220.0270.0190.050----
22.10.3550.3580.2690.100.2
23----0.002----
23.10.004--0.0070.14--
24.10.0040.019--0.06--
26VGL1063 8----0.0020.02--
9------0.02--
11------0.02--
120.023--0.022----
130.023--0.0170.04--
140.2460.1510.2540.360.2
150.3980.4530.3980.320.8
160.1210.1600.1270.02--
170.0470.0660.0550.10--
180.0940.1420.0720.10--
190.0080.0090.002----
200.0390.0190.045----
21----0.005----
27VGL1165 15------0.02--
18------0.02--
190.4730.4530.5700.320.8
200.2660.1600.1020.14--
210.0630.0660.0620.060.2
220.004--------
250.0040.019--0.08--
260.0200.0750.0320.06--
27----0.002----
280.0940.0750.0900.26--
290.0740.1420.1270.04--
300.0040.0090.010----
31----0.005----
28VGL1828 140.0940.1130.072----
150.0470.0850.030--0.2
160.2150.2360.1590.280.3
170.1290.1510.1370.120.3
18--0.0090.0200.040.2
190.3790.2550.3730.26--
200.0510.0190.0220.02--
210.051--0.0470.14--
220.0350.1320.1390.10--
23------0.04--
29VGL2009 100.012--0.0100.04--
110.2460.1980.2790.12--
120.031--0.0020.020.2
130.5660.6510.5250.440.3
140.0230.0380.0700.260.5
150.1090.1130.1000.12--
160.012--0.015----
30VGL2409 130.0160.0190.0050.020.2
140.008--0.0150.02--
150.008--0.0070.06--
160.0740.0850.1520.08--
170.2230.3110.2310.400.2
180.3090.2260.3230.380.7
190.012--0.0150.02--
200.3520.3580.2440.02--
21----0.007----
31VGL2918 120.0820.1790.1140.140.2
130.1050.0090.1340.140.2
140.0740.1040.0800.12--
150.020--0.0320.10--
160.0040.0090.017----
17.30.5510.4620.4850.280.7
18------0.02--
18.30.0940.1130.0370.14--
19.30.0700.1040.0850.06--
20.3--0.019------
22.3----0.015----
32VGL3008 130.0590.0470.030----
150.1130.0940.1470.140.3
160.0270.0940.0600.02--
170.1370.2080.0650.080.2
180.4220.2830.3610.320.2
190.0780.0280.1120.16--
200.1640.2450.2160.240.3
21----0.002----
22----0.0070.04--
33VGL3235 120.0040.0090.0150.04--
130.1210.0660.1170.04--
140.2230.2830.1890.380.2
150.1170.0940.0920.06--
160.0470.0380.0450.12--
170.2660.1420.2340.100.3
180.1520.1790.1640.160.5
190.0040.0090.0170.04--
200.0120.0090.0120.02--
210.0550.1700.1140.04--

Standard genetic assessment based on 33 autosomal STR loci

Biewer

  NNaNeHoHeF
Mean4108.3333.5320.6730.6870.020
 SE 0.4170.1840.0200.0190.005

Biewer Yorshire Terrier

  NNaNeHoHeF
Mean535.9703.3950.6900.673-0.027
 SE 0.2950.1720.0230.0210.014

Biewer Terrier

  NNaNeHoHeF
Mean2017.1823.4250.6610.6750.021
 SE 0.3700.1890.0210.0200.009

Yorkshire Terrier

  NNaNeHoHeF
Mean256.8483.8950.6950.7200.034
 SE 0.2910.2270.0180.0140.019

Biro Biewer

  NNaNeHoHeF
Mean32.6362.2110.5860.483-0.190
 SE 0.1470.1360.0570.0350.076

Standard genetic assessment based on 7 STRs in the DLA region

Biewer

  NNaNeHoHeF
Mean4106.7142.6020.6070.603-0.006
 SE 0.8010.1710.0300.0290.005

Biewer Yorshire Terrier

  NNaNeHoHeF
Mean536.1433.0920.6930.660-0.054
 SE 0.6520.2450.0250.0300.027

Biewer Terrier

  NNaNeHoHeF
Mean2015.2862.3850.5770.568-0.012
 SE 0.6910.1470.0350.0300.013

Yorkshire Terrier

  NNaNeHoHeF
Mean255.5712.8370.5200.6300.183
 SE 0.4450.2180.0540.0320.066

Biro Biewer

  NNaNeHoHeF
Mean32.4292.0960.7620.460-0.535
 SE 0.2750.2310.1460.0830.116

Standard genetic assessment for individual STR loci

Biewer

#LocusNNaNeHoHeF
1AHT121410125.0160.8200.801-0.024
2AHT137410104.2100.7830.762-0.027
3AHTH13041093.6110.7150.7230.012
4AHTh171-A41081.9920.4980.4980.001
5AHTh26041083.1740.6630.6850.031
6AHTk21141052.4800.5940.5970.004
7AHTk25341062.9970.6540.6660.019
8C22.27941083.8160.7220.7380.022
9FH200141082.4810.5760.5970.036
10FH205441064.2340.7680.764-0.006
11FH284841073.4090.7200.707-0.018
12INRA2141063.9300.7170.7460.038
13INU00541091.5980.3610.3740.035
14INU03041072.4930.6020.599-0.006
15INU05541062.7060.6070.6300.037
16LEI00441061.6010.3660.3750.025
17REN105L0341074.0530.7490.7530.006
18REN162C0441073.1080.6410.6780.054
19REN169D0141053.6070.7270.723-0.006
20REN169O1841082.3130.5590.5680.016
21REN247M2341053.1200.6930.679-0.019
22REN54P1141084.5720.7200.7810.079
23REN64E1941083.0790.6050.6750.104
24VGL076041094.6590.7270.7850.075
25VGL0910410155.1720.8170.807-0.013
26VGL1063410133.9930.7240.7500.034
27VGL1165410133.1860.6730.6860.019
28VGL1828410104.9720.7900.7990.011
29VGL200941072.6580.5930.6240.050
30VGL240941094.0100.7490.7510.002
31VGL2918410113.4960.6760.7140.054
32VGL300841094.5950.7900.782-0.010
33VGL3235410106.2340.8120.8400.033

Biewer Yorshire Terrier

#LocusNNaNeHoHeF
1AHT1215373.8770.7920.742-0.068
2AHT1375364.1310.7550.7580.004
3AHTH1305363.7910.7550.736-0.025
4AHTh171-A5341.6120.3770.3790.006
5AHTh2605372.7980.6040.6430.060
6AHTk2115332.0070.4910.5020.022
7AHTk2535353.1790.6420.6850.064
8C22.2795373.6620.6980.7270.040
9FH20015362.5790.5850.6120.045
10FH20545363.3780.6600.7040.062
11FH28485353.4030.7740.706-0.096
12INRA215364.1250.7170.7580.054
13INU0055341.5550.3960.357-0.111
14INU0305362.5930.6040.6140.017
15INU0555352.9840.6420.6650.035
16LEI0045331.5090.3580.337-0.063
17REN105L035354.2300.6600.7640.135
18REN162C045363.1090.7550.678-0.113
19REN169D015353.6500.8490.726-0.169
20REN169O185353.1040.6980.678-0.030
21REN247M235343.0970.8110.677-0.198
22REN54P115364.5090.7360.7780.054
23REN64E195352.9370.7740.659-0.173
24VGL07605383.5600.7920.719-0.102
25VGL091053104.0590.7740.754-0.026
26VGL10635373.5920.7550.722-0.046
27VGL11655383.7450.7170.7330.022
28VGL18285385.5190.8110.8190.009
29VGL20095342.0950.5850.523-0.119
30VGL24095353.5180.6790.7160.051
31VGL29185383.5620.8300.719-0.154
32VGL30085374.8980.8300.796-0.043
33VGL323553105.6800.8490.824-0.030

Biewer Terrier

#LocusNNaNeHoHeF
1AHT121201124.7600.8060.790-0.020
2AHT13720174.2350.8060.764-0.055
3AHTH13020183.2410.6770.6910.021
4AHTh171-A20171.8670.4830.464-0.039
5AHTh26020173.0950.6520.6770.037
6AHTk21120152.6100.6220.617-0.008
7AHTk25320152.8630.6520.651-0.002
8C22.27920183.4780.6920.7120.029
9FH200120152.3560.5320.5750.075
10FH205420164.2550.7660.765-0.002
11FH284820173.3470.7060.701-0.007
12INRA2120153.6210.7110.7240.017
13INU00520181.6050.3630.3770.036
14INU03020162.1200.5170.5280.020
15INU05520152.4950.6020.599-0.005
16LEI00420131.6870.3930.4070.035
17REN105L0320154.0360.7610.752-0.012
18REN162C0420163.0400.5920.6710.118
19REN169D0120153.3310.6820.7000.026
20REN169O1820162.0430.5120.511-0.004
21REN247M2320143.0250.6370.6690.049
22REN54P1120174.4560.7260.7760.063
23REN64E1920172.8780.5470.6530.161
24VGL076020194.7100.6970.7880.116
25VGL0910201115.0250.8160.801-0.019
26VGL1063201114.0010.7610.750-0.015
27VGL116520192.7470.6470.636-0.017
28VGL182820194.7190.7960.788-0.010
29VGL200920172.7160.6120.6320.031
30VGL240920194.1470.8110.759-0.069
31VGL291820193.5350.6420.7170.105
32VGL300820194.5510.7460.7800.044
33VGL3235201106.4390.8410.8450.005

Yorkshire Terrier

#LocusNNaNeHoHeF
1AHT1212596.5450.8800.847-0.039
2AHT1372573.9680.8000.748-0.070
3AHTH1302583.9810.6800.7490.092
4AHTh171-A2573.2980.8000.697-0.148
5AHTh2602563.8340.6800.7390.080
6AHTk2112552.1370.5420.532-0.018
7AHTk2532563.2890.8000.696-0.149
8C22.2792583.6550.6800.7260.064
9FH20012573.9430.6400.7460.143
10FH20542553.4530.7600.710-0.070
11FH28482543.5010.6000.7140.160
12INRA212543.3070.7200.698-0.032
13INU0052582.8540.6400.6500.015
14INU0302563.5510.6400.7180.109
15INU0552563.2720.7600.694-0.094
16LEI0042551.8880.3600.4700.235
17REN105L032563.0560.7200.673-0.070
18REN162C042573.1570.7200.683-0.054
19REN169D012553.7540.6800.7340.073
20REN169O182573.5510.7600.718-0.058
21REN247M232543.8940.7200.7430.031
22REN54P112572.6880.4800.6280.236
23REN64E192572.6710.7200.626-0.151
24VGL07602564.2660.6400.7660.164
25VGL091025118.8650.7600.8870.143
26VGL10632593.9180.7600.745-0.020
27VGL11652594.8640.6800.7940.144
28VGL18282585.1650.8000.8060.008
29VGL20092563.4250.6000.7080.153
30VGL24092583.1650.6000.6840.123
31VGL29182586.0390.7200.8340.137
32VGL30082574.6820.8400.786-0.068
33VGL323525104.8830.7600.7950.044

Biro Biewer

#LocusNNaNeHoHeF
1AHT121332.0000.6670.500-0.333
2AHT137321.8000.6670.444-0.500
3AHTH130332.0000.3330.5000.333
4AHTh171-A332.5710.3330.6110.455
5AHTh260332.5711.0000.611-0.636
6AHTk211321.8000.6670.444-0.500
7AHTk253321.8000.6670.444-0.500
8C22.279321.3850.3330.278-0.200
9FH2001332.0000.6670.500-0.333
10FH2054322.0001.0000.500-1.000
11FH2848322.0001.0000.500-1.000
12INRA21343.6001.0000.722-0.385
13INU005311.0000.0000.0000.000
14INU030332.5710.6670.611-0.091
15INU055321.8000.0000.4441.000
16LEI004321.3850.3330.278-0.200
17REN105L03311.0000.0000.0000.000
18REN162C04333.0000.6670.6670.000
19REN169D01332.0000.6670.500-0.333
20REN169O18311.0000.0000.0000.000
21REN247M23332.5711.0000.611-0.636
22REN54P11343.6000.6670.7220.077
23REN64E19321.8000.0000.4441.000
24VGL0760333.0000.6670.6670.000
25VGL0910343.6001.0000.722-0.385
26VGL1063321.3850.3330.278-0.200
27VGL1165321.3850.3330.278-0.200
28VGL1828343.6000.6670.7220.077
29VGL2009332.5710.6670.611-0.091
30VGL2409332.0000.6670.500-0.333
31VGL2918332.0000.6670.500-0.333
32VGL3008343.6001.0000.722-0.385
33VGL3235332.5711.0000.611-0.636

Standard genetic assessment for 7 STRs in the DLA region

Biewer

#LocusNNaNeHoHeF
1DLA I-3CCA41082.2460.5540.5550.002
2DLA I-4ACA41092.4480.6100.592-0.031
3DLA I-4BCT41063.2810.7000.695-0.007
4DLA1131410102.9540.6610.6610.001
55ACA41042.8340.6610.647-0.021
65ACT41052.6450.6170.6220.008
75BCA41051.8040.4440.4460.004

Biewer Yorshire Terrier

#LocusNNaNeHoHeF
1DLA I-3CCA5382.0300.5850.507-0.153
2DLA I-4ACA5373.0600.7360.673-0.093
3DLA I-4BCT5353.4240.6600.7080.067
4DLA11315394.1280.7360.7580.029
55ACA5343.5270.7920.716-0.106
65ACT5353.0470.7170.672-0.067
75BCA5352.4320.6230.589-0.057

Biewer Terrier

#LocusNNaNeHoHeF
1DLA I-3CCA20182.2090.5370.5470.018
2DLA I-4ACA20152.2190.5720.549-0.041
3DLA I-4BCT20153.0180.6970.669-0.042
4DLA113120182.5980.6370.615-0.035
55ACA20142.5210.6020.6030.002
65ACT20142.4660.6170.595-0.038
75BCA20131.6610.3780.3980.050

Yorkshire Terrier

#LocusNNaNeHoHeF
1DLA I-3CCA2563.4720.6000.7120.157
2DLA I-4ACA2582.7900.6000.6420.065
3DLA I-4BCT2553.3970.6000.7060.150
4DLA11312563.4060.6400.7060.094
55ACA2542.5880.6000.6140.022
65ACT2552.3630.2400.5770.584
75BCA2551.8410.3600.4570.212

Biro Biewer

#LocusNNaNeHoHeF
1DLA I-3CCA332.5711.0000.611-0.636
2DLA I-4ACA332.5711.0000.611-0.636
3DLA I-4BCT332.5711.0000.611-0.636
4DLA1131321.3850.3330.278-0.200
55ACA332.5711.0000.611-0.636
65ACT322.0001.0000.500-1.000
75BCA311.0000.0000.0000.000