Updated Jul 26, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Black Russian Terrier (n=158) |
---|---|---|
1006 | 387 375 293 180 | 0.054 |
1014 | 375 373 287 178 | 0.035 |
1016 | 382 371 277 178 | 0.009 |
1091 | 381 371 277 181 | 0.500 |
1092 | 376 379 277 181 | 0.247 |
1093 | 386 379 277 180 | 0.085 |
1094 | 395 375 277 176 | 0.016 |
1095 | 382 371 277 184 | 0.022 |
1096 | 395 375 277 182 | 0.003 |
1160 | 386 369 289 176 | 0.028 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Black Russian Terrier (n=158) |
---|---|---|
2005 | 339 322 280 | 0.016 |
2007 | 351 327 280 | 0.054 |
2023 | 341 323 282 | 0.003 |
2031 | 339 322 282 | 0.032 |
2032 | 339 323 280 | 0.085 |
2033 | 339 323 282 | 0.503 |
2037 | 341 327 280 | 0.278 |
2060 | 343 323 284 | 0.028 |
Allele Frequencies
# | Locus Name | Allele | Black Russian Terrier (n=158) |
---|---|---|---|
1 | AHT121 | 92 | 0.091 |
98 | 0.266 | ||
102 | 0.175 | ||
108 | 0.050 | ||
110 | 0.053 | ||
112 | 0.316 | ||
114 | 0.025 | ||
116 | 0.003 | ||
120 | 0.022 | ||
2 | AHT137 | 131 | 0.022 |
133 | 0.231 | ||
135 | 0.144 | ||
137 | 0.103 | ||
141 | 0.281 | ||
147 | 0.197 | ||
151 | 0.022 | ||
3 | AHTH130 | 119 | 0.447 |
121 | 0.038 | ||
125 | 0.034 | ||
127 | 0.006 | ||
129 | 0.044 | ||
131 | 0.431 | ||
4 | AHTh171-A | 217 | 0.006 |
219 | 0.150 | ||
221 | 0.159 | ||
223 | 0.003 | ||
225 | 0.075 | ||
227 | 0.097 | ||
229 | 0.184 | ||
233 | 0.322 | ||
235 | 0.003 | ||
5 | AHTh260 | 238 | 0.025 |
242 | 0.197 | ||
244 | 0.316 | ||
246 | 0.197 | ||
248 | 0.041 | ||
250 | 0.003 | ||
252 | 0.197 | ||
254 | 0.025 | ||
6 | AHTk211 | 87 | 0.709 |
89 | 0.144 | ||
91 | 0.041 | ||
93 | 0.103 | ||
95 | 0.003 | ||
7 | AHTk253 | 286 | 0.244 |
290 | 0.681 | ||
294 | 0.075 | ||
8 | C22.279 | 118 | 0.328 |
120 | 0.138 | ||
122 | 0.025 | ||
124 | 0.163 | ||
126 | 0.113 | ||
130 | 0.231 | ||
134 | 0.003 | ||
9 | FH2001 | 132 | 0.084 |
136 | 0.019 | ||
144 | 0.309 | ||
148 | 0.484 | ||
152 | 0.031 | ||
158 | 0.072 | ||
10 | FH2054 | 152 | 0.113 |
156 | 0.734 | ||
160 | 0.044 | ||
164 | 0.019 | ||
168 | 0.088 | ||
176 | 0.003 | ||
11 | FH2848 | 230 | 0.003 |
232 | 0.142 | ||
234 | 0.330 | ||
236 | 0.003 | ||
238 | 0.267 | ||
240 | 0.239 | ||
242 | 0.016 | ||
12 | INRA21 | 95 | 0.722 |
97 | 0.244 | ||
99 | 0.013 | ||
101 | 0.016 | ||
105 | 0.006 | ||
13 | INU005 | 110 | 0.009 |
122 | 0.319 | ||
124 | 0.575 | ||
126 | 0.094 | ||
128 | 0.003 | ||
14 | INU030 | 144 | 0.341 |
146 | 0.025 | ||
148 | 0.053 | ||
150 | 0.438 | ||
152 | 0.144 | ||
15 | INU055 | 208 | 0.259 |
210 | 0.075 | ||
214 | 0.325 | ||
216 | 0.216 | ||
218 | 0.125 | ||
16 | LEI004 | 85 | 0.494 |
95 | 0.350 | ||
97 | 0.156 | ||
17 | REN105L03 | 231 | 0.409 |
233 | 0.369 | ||
239 | 0.003 | ||
241 | 0.097 | ||
245 | 0.122 | ||
18 | REN162C04 | 200 | 0.225 |
202 | 0.300 | ||
204 | 0.391 | ||
206 | 0.016 | ||
208 | 0.063 | ||
210 | 0.006 | ||
19 | REN169D01 | 210 | 0.306 |
212 | 0.388 | ||
214 | 0.059 | ||
216 | 0.194 | ||
220 | 0.053 | ||
20 | REN169O18 | 162 | 0.247 |
164 | 0.222 | ||
166 | 0.159 | ||
168 | 0.156 | ||
170 | 0.216 | ||
21 | REN247M23 | 268 | 0.038 |
270 | 0.245 | ||
272 | 0.566 | ||
276 | 0.151 | ||
22 | REN54P11 | 222 | 0.381 |
226 | 0.213 | ||
228 | 0.003 | ||
232 | 0.006 | ||
236 | 0.075 | ||
238 | 0.322 | ||
23 | REN64E19 | 139 | 0.088 |
145 | 0.334 | ||
147 | 0.197 | ||
149 | 0.381 | ||
24 | VGL0760 | 12 | 0.016 |
13 | 0.009 | ||
18.2 | 0.003 | ||
19.2 | 0.304 | ||
20.2 | 0.092 | ||
21.2 | 0.184 | ||
22.2 | 0.386 | ||
23.2 | 0.006 | ||
25 | VGL0910 | 12 | 0.233 |
15 | 0.013 | ||
16 | 0.157 | ||
16.1 | 0.028 | ||
17 | 0.003 | ||
17.1 | 0.308 | ||
18.1 | 0.016 | ||
19.1 | 0.242 | ||
26 | VGL1063 | 8 | 0.153 |
10 | 0.250 | ||
13 | 0.031 | ||
14 | 0.009 | ||
15 | 0.113 | ||
16 | 0.041 | ||
17 | 0.253 | ||
18 | 0.025 | ||
20 | 0.122 | ||
21 | 0.003 | ||
27 | VGL1165 | 14 | 0.003 |
15 | 0.003 | ||
16 | 0.513 | ||
17 | 0.025 | ||
18 | 0.081 | ||
19 | 0.003 | ||
23 | 0.003 | ||
27 | 0.044 | ||
28 | 0.116 | ||
29 | 0.163 | ||
30 | 0.041 | ||
31 | 0.006 | ||
28 | VGL1828 | 14 | 0.016 |
15 | 0.230 | ||
16 | 0.016 | ||
17 | 0.264 | ||
18 | 0.041 | ||
19 | 0.132 | ||
20 | 0.299 | ||
21 | 0.003 | ||
29 | VGL2009 | 9 | 0.028 |
11 | 0.075 | ||
13 | 0.297 | ||
14 | 0.478 | ||
15 | 0.122 | ||
30 | VGL2409 | 13 | 0.003 |
15 | 0.484 | ||
16 | 0.200 | ||
17 | 0.184 | ||
18 | 0.028 | ||
19 | 0.100 | ||
31 | VGL2918 | 12 | 0.003 |
13 | 0.107 | ||
14 | 0.340 | ||
15 | 0.013 | ||
17.3 | 0.418 | ||
18.3 | 0.044 | ||
19.3 | 0.044 | ||
20.3 | 0.016 | ||
21.3 | 0.003 | ||
22.3 | 0.013 | ||
32 | VGL3008 | 14 | 0.119 |
15 | 0.091 | ||
17 | 0.009 | ||
18 | 0.138 | ||
19 | 0.456 | ||
20 | 0.013 | ||
21 | 0.009 | ||
22 | 0.153 | ||
23 | 0.013 | ||
33 | VGL3235 | 13 | 0.283 |
14 | 0.123 | ||
15 | 0.145 | ||
16 | 0.179 | ||
17 | 0.082 | ||
18 | 0.186 | ||
19 | 0.003 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 158 | 6.485 | 3.492 | 0.687 | 0.683 | -0.008 | |
SE | 0.361 | 0.182 | 0.018 | 0.019 | 0.009 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 158 | 4.571 | 2.095 | 0.518 | 0.491 | -0.049 | |
SE | 0.529 | 0.195 | 0.056 | 0.051 | 0.014 |
Standard genetic assessment for individual STR loci
Black Russian Terrier
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 158 | 9 | 4.641 | 0.794 | 0.785 | -0.012 |
2 | AHT137 | 158 | 7 | 4.912 | 0.788 | 0.796 | 0.011 |
3 | AHTH130 | 158 | 6 | 2.563 | 0.650 | 0.610 | -0.066 |
4 | AHTh171-A | 158 | 9 | 4.986 | 0.750 | 0.799 | 0.062 |
5 | AHTh260 | 158 | 8 | 4.570 | 0.831 | 0.781 | -0.064 |
6 | AHTk211 | 158 | 5 | 1.865 | 0.463 | 0.464 | 0.003 |
7 | AHTk253 | 158 | 3 | 1.890 | 0.513 | 0.471 | -0.088 |
8 | C22.279 | 158 | 7 | 4.551 | 0.744 | 0.780 | 0.047 |
9 | FH2001 | 158 | 6 | 2.907 | 0.688 | 0.656 | -0.048 |
10 | FH2054 | 158 | 6 | 1.780 | 0.469 | 0.438 | -0.070 |
11 | FH2848 | 158 | 7 | 3.878 | 0.717 | 0.742 | 0.034 |
12 | INRA21 | 158 | 5 | 1.721 | 0.438 | 0.419 | -0.044 |
13 | INU005 | 158 | 5 | 2.267 | 0.606 | 0.559 | -0.085 |
14 | INU030 | 158 | 5 | 3.016 | 0.581 | 0.668 | 0.130 |
15 | INU055 | 158 | 5 | 4.156 | 0.800 | 0.759 | -0.054 |
16 | LEI004 | 158 | 3 | 2.559 | 0.600 | 0.609 | 0.015 |
17 | REN105L03 | 158 | 5 | 3.051 | 0.625 | 0.672 | 0.070 |
18 | REN162C04 | 158 | 6 | 3.362 | 0.738 | 0.703 | -0.050 |
19 | REN169D01 | 158 | 5 | 3.474 | 0.688 | 0.712 | 0.035 |
20 | REN169O18 | 158 | 5 | 4.843 | 0.781 | 0.794 | 0.015 |
21 | REN247M23 | 158 | 4 | 2.471 | 0.610 | 0.595 | -0.025 |
22 | REN54P11 | 158 | 6 | 3.336 | 0.738 | 0.700 | -0.053 |
23 | REN64E19 | 158 | 4 | 3.294 | 0.694 | 0.696 | 0.004 |
24 | VGL0760 | 158 | 8 | 3.523 | 0.690 | 0.716 | 0.037 |
25 | VGL0910 | 158 | 8 | 4.279 | 0.774 | 0.766 | -0.009 |
26 | VGL1063 | 158 | 10 | 5.529 | 0.819 | 0.819 | 0.000 |
27 | VGL1165 | 158 | 12 | 3.192 | 0.744 | 0.687 | -0.083 |
28 | VGL1828 | 158 | 8 | 4.323 | 0.780 | 0.769 | -0.015 |
29 | VGL2009 | 158 | 5 | 2.959 | 0.688 | 0.662 | -0.039 |
30 | VGL2409 | 158 | 6 | 3.131 | 0.663 | 0.681 | 0.027 |
31 | VGL2918 | 158 | 10 | 3.266 | 0.692 | 0.694 | 0.003 |
32 | VGL3008 | 158 | 9 | 3.659 | 0.656 | 0.727 | 0.097 |
33 | VGL3235 | 158 | 7 | 5.282 | 0.855 | 0.811 | -0.055 |
Standard genetic assessment for 7 STRs in the DLA region
Black Russian Terrier
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 158 | 7 | 3.031 | 0.730 | 0.670 | -0.089 |
2 | DLA I-4ACA | 158 | 5 | 2.498 | 0.627 | 0.600 | -0.045 |
3 | DLA I-4BCT | 158 | 4 | 1.273 | 0.214 | 0.214 | 0.002 |
4 | DLA1131 | 158 | 6 | 1.713 | 0.453 | 0.416 | -0.088 |
5 | 5ACA | 158 | 4 | 2.051 | 0.513 | 0.512 | -0.001 |
6 | 5ACT | 158 | 3 | 2.011 | 0.544 | 0.503 | -0.083 |
7 | 5BCA | 158 | 3 | 2.091 | 0.544 | 0.522 | -0.043 |