Statistics and Breed-wide Allele Frequency - Border Collie

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesBorder Collie (n=61)
1008386 373 289 1820.008
1011376 365 281 1800.074
1012388 369 289 1880.057
1014375 373 287 1780.074
1029380 365 281 1820.008
1030380 373 293 1780.008
1045376 371 277 1860.164
1052380 372 289 1840.008
1068380 373 287 1810.221
1092376 379 277 1810.008
1104386 373 289 1860.115
1222386 379 277 1810.008
1236376 379 289 1810.221
1237376 379 277 1780.008
1238376 371 277 1840.008
1239376 371 277 1810.008

DLA Class II Haplotype Frequencies

DLA2 #STR typesBorder Collie (n=61)
2001343 324 2840.148
2002343 327 2800.123
2003343 324 2820.057
2005339 322 2800.008
2017343 322 2800.172
2022339 327 2820.008
2023341 323 2820.008
2031339 322 2820.008
2033339 323 2820.008
2037341 327 2800.074
2039345 327 2760.156
2053343 324 2800.074
2067343 322 2840.066
2075341 327 2820.016
2096351 322 2800.033
2125351 322 2860.041

Allele Frequencies

#Locus NameAlleleBorder Collie (n=66)
1AHT121 920.054
940.085
980.054
1000.100
1020.262
1040.015
1060.262
1080.131
1100.008
1120.031
2AHT137 1310.235
1370.068
1410.015
1430.008
1450.409
1470.061
1490.106
1530.098
3AHTH130 1170.008
1190.023
1210.341
1250.030
1270.129
1290.061
1310.227
1330.038
1350.144
4AHTh171-A 2190.015
2210.008
2250.154
2270.015
2290.092
2310.008
2330.438
2350.038
2370.223
2410.008
5AHTh260 2380.159
2400.206
2420.167
2440.008
2460.397
2480.048
2520.008
2540.008
6AHTk211 870.100
890.092
910.738
930.023
950.015
970.031
7AHTk253 2840.085
2860.108
2880.354
2900.015
2920.438
8C22.279 1140.046
1160.300
1180.523
1200.015
1240.077
1260.023
1280.015
9FH2001 1280.054
1320.385
1360.031
1400.015
1440.438
1480.077
10FH2054 1440.008
1480.115
1520.423
1560.131
1600.223
1640.038
1680.046
1720.008
1760.008
11FH2848 2320.024
2340.159
2360.024
2380.103
2400.214
2420.270
2440.206
12INRA21 910.114
950.712
970.076
1010.091
1030.008
13INU005 1100.115
1200.008
1220.008
1240.323
1260.100
1280.023
1300.008
1320.415
14INU030 1440.200
1480.046
1500.331
1520.323
1540.100
15INU055 2080.182
2100.727
2120.015
2140.008
2160.038
2180.030
16LEI004 850.246
950.562
1070.169
1110.023
17REN105L03 2270.040
2310.032
2330.238
2350.159
2370.040
2390.167
2410.317
2450.008
18REN162C04 2000.092
2020.385
2040.269
2060.085
2080.169
19REN169D01 2020.159
2100.111
2120.087
2140.008
2160.460
2180.151
2200.016
2240.008
20REN169O18 1600.023
1620.047
1640.117
1660.023
1680.453
1700.336
21REN247M23 2660.159
2680.230
2700.167
2720.222
2760.087
2780.135
22REN54P11 2220.015
2260.192
2280.015
2320.454
2340.131
2360.162
2380.031
23REN64E19 1390.015
1430.030
1450.409
1470.242
1490.159
1530.144
24VGL0760 120.062
140.262
150.008
18.20.038
20.20.154
21.20.377
22.20.023
23.20.077
25VGL0910 16.10.023
17.10.462
18.10.162
19.10.185
20.10.077
21.10.023
22.10.062
24.10.008
26VGL1063 80.046
90.592
110.008
120.031
130.046
140.115
150.077
170.008
180.008
190.008
200.038
210.015
220.008
27VGL1165 140.008
170.015
180.008
200.346
210.169
220.015
230.008
250.008
260.131
270.062
280.077
290.031
300.115
310.008
28VGL1828 150.138
160.069
170.323
190.092
200.031
210.192
220.154
29VGL2009 90.446
100.038
110.015
120.015
130.208
140.077
150.192
160.008
30VGL2409 130.062
140.362
150.054
160.031
170.331
180.108
190.031
200.023
31VGL2918 120.308
130.131
140.177
150.138
160.023
17.30.115
18.30.092
19.30.008
20.30.008
32VGL3008 100.015
140.062
150.085
160.292
170.100
180.215
190.054
200.100
220.054
230.015
240.008
33VGL3235 120.123
130.023
140.315
150.077
160.146
170.092
180.215
190.008

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

  NNaNeHoHeF
Mean667.6673.8200.6840.7100.038
 SE 0.3800.1940.0190.0180.014

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

  NNaNeHoHeF
Mean665.4293.0820.6650.6700.006
 SE 0.3410.1420.0230.0190.021

Standard genetic assessment for individual STR loci

Border Collie

#LocusNNaNeHoHeF
1AHT12166105.6150.7690.8220.064
2AHT1376683.9670.6520.7480.129
3AHTH1306694.7220.7880.7880.000
4AHTh171-A66103.6190.7080.7240.022
5AHTh2606683.9140.7620.745-0.023
6AHTk2116661.7680.3230.4340.256
7AHTk2536652.9720.6620.6640.003
8C22.2796672.6830.6920.627-0.104
9FH20016662.8560.6310.6500.029
10FH20546693.8030.6620.7370.102
11FH28486675.0430.8250.802-0.030
12INRA216651.8720.4390.4660.057
13INU0056683.3230.7080.699-0.012
14INU0306653.7610.8150.734-0.111
15INU0556661.7710.4700.435-0.079
16LEI0046642.4690.5850.5950.017
17REN105L036684.6580.6830.7850.131
18REN162C046653.7770.6460.7350.121
19REN169D016683.5690.7460.720-0.036
20REN169O186662.9830.6090.6650.083
21REN247M236665.5200.8730.819-0.066
22REN54P116673.4770.6770.7120.050
23REN64E196663.6590.7120.7270.020
24VGL07606684.0660.6920.7540.082
25VGL09106683.5210.6770.7160.055
26VGL106366132.6510.6000.6230.036
27VGL116566145.2550.7380.8100.088
28VGL18286675.0390.6770.8020.155
29VGL20096683.4830.6620.7130.072
30VGL24096683.8340.7850.739-0.061
31VGL29186695.4130.7380.8150.094
32VGL300866115.9130.8150.8310.019
33VGL32356685.0660.7380.8030.080

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#LocusNNaNeHoHeF
1DLA I-3CCA6653.0340.6610.6700.014
2DLA I-4ACA6663.4760.7080.7120.006
3DLA I-4BCT6663.3880.7540.705-0.070
4DLA11316673.1650.6460.6840.055
55ACA6652.2420.5710.554-0.032
65ACT6643.0280.6000.6700.104
75BCA6653.2400.7140.691-0.033