Statistics and Breed-wide Allele Frequency - Border Collie

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=68)
1008	386 373 289 182	0.007
1011	376 365 281 180	0.066
1012	388 369 289 188	0.051
1014	375 373 287 178	0.081
1029	380 365 281 182	0.007
1030	380 373 293 178	0.007
1045	376 371 277 186	0.154
1052	380 372 289 184	0.015
1063	382 373 289 182	0.007
1068	380 373 287 181	0.213
1092	376 379 277 181	0.007
1104	386 373 289 186	0.132
1222	386 379 277 181	0.007
1236	376 379 289 181	0.221
1237	376 379 277 178	0.007
1238	376 371 277 184	0.007
1239	376 371 277 181	0.007

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=68)
2001	343 324 284	0.140
2002	343 327 280	0.140
2003	343 324 282	0.051
2005	339 322 280	0.007
2017	343 322 280	0.169
2022	339 327 282	0.007
2023	341 323 282	0.007
2031	339 322 282	0.007
2033	339 323 282	0.007
2037	341 327 280	0.081
2039	345 327 276	0.147
2052	345 321 280	0.007
2053	343 324 280	0.074
2067	343 322 284	0.074
2075	341 327 282	0.015
2096	351 322 280	0.029
2125	351 322 286	0.037

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=73)
1	AHT121	92	0.069
		94	0.083
		98	0.049
		100	0.097
		102	0.250
		104	0.028
		106	0.257
		108	0.132
		110	0.007
		112	0.028
2	AHT137	131	0.226
		137	0.062
		141	0.014
		143	0.007
		145	0.411
		147	0.075
		149	0.116
		153	0.089
3	AHTH130	117	0.007
		119	0.027
		121	0.336
		123	0.007
		125	0.027
		127	0.116
		129	0.055
		131	0.240
		133	0.041
		135	0.144
4	AHTh171-A	219	0.014
		221	0.007
		225	0.139
		227	0.014
		229	0.104
		231	0.007
		233	0.438
		235	0.035
		237	0.236
		241	0.007
5	AHTh260	238	0.143
		240	0.243
		242	0.150
		244	0.014
		246	0.386
		248	0.050
		252	0.007
		254	0.007
6	AHTk211	87	0.111
		89	0.083
		91	0.736
		93	0.021
		95	0.014
		97	0.035
7	AHTk253	284	0.111
		286	0.097
		288	0.340
		290	0.014
		292	0.438
8	C22.279	114	0.056
		116	0.278
		118	0.549
		120	0.014
		124	0.069
		126	0.021
		128	0.014
9	FH2001	128	0.056
		132	0.410
		136	0.035
		140	0.014
		144	0.410
		148	0.076
10	FH2054	144	0.007
		148	0.118
		152	0.424
		156	0.132
		160	0.215
		164	0.035
		168	0.056
		172	0.007
		176	0.007
11	FH2848	232	0.021
		234	0.164
		236	0.021
		238	0.093
		240	0.200
		242	0.279
		244	0.221
12	INRA21	91	0.110
		95	0.726
		97	0.068
		101	0.089
		103	0.007
13	INU005	110	0.111
		120	0.007
		122	0.007
		124	0.333
		126	0.111
		128	0.021
		130	0.007
		132	0.403
14	INU030	144	0.215
		148	0.042
		150	0.326
		152	0.306
		154	0.104
		156	0.007
15	INU055	208	0.185
		210	0.733
		212	0.014
		214	0.007
		216	0.034
		218	0.027
16	LEI004	85	0.236
		95	0.556
		107	0.188
		111	0.021
17	REN105L03	227	0.036
		231	0.029
		233	0.257
		235	0.143
		237	0.036
		239	0.179
		241	0.314
		245	0.007
18	REN162C04	200	0.097
		202	0.403
		204	0.264
		206	0.076
		208	0.160
19	REN169D01	202	0.143
		210	0.129
		212	0.107
		214	0.007
		216	0.436
		218	0.150
		220	0.021
		224	0.007
20	REN169O18	160	0.021
		162	0.042
		164	0.113
		166	0.021
		168	0.486
		170	0.317
21	REN247M23	266	0.164
		268	0.236
		270	0.179
		272	0.214
		276	0.079
		278	0.129
22	REN54P11	222	0.014
		226	0.181
		228	0.028
		232	0.444
		234	0.125
		236	0.181
		238	0.028
23	REN64E19	139	0.014
		143	0.027
		145	0.397
		147	0.253
		149	0.178
		153	0.130
24	VGL0760	12	0.056
		14	0.271
		15	0.007
		18.2	0.035
		20.2	0.153
		21.2	0.375
		22.2	0.021
		23.2	0.076
		24.2	0.007
25	VGL0910	16.1	0.028
		17.1	0.465
		18.1	0.153
		19.1	0.188
		20.1	0.069
		21.1	0.021
		22.1	0.063
		23.1	0.007
		24.1	0.007
26	VGL1063	8	0.042
		9	0.611
		11	0.007
		12	0.035
		13	0.042
		14	0.104
		15	0.076
		17	0.014
		18	0.007
		19	0.007
		20	0.035
		21	0.014
		22	0.007
27	VGL1165	14	0.007
		15	0.007
		17	0.014
		18	0.007
		20	0.340
		21	0.181
		22	0.014
		23	0.007
		24	0.007
		25	0.007
		26	0.125
		27	0.056
		28	0.090
		29	0.028
		30	0.104
		31	0.007
28	VGL1828	15	0.125
		16	0.090
		17	0.319
		19	0.090
		20	0.035
		21	0.174
		22	0.167
29	VGL2009	9	0.424
		10	0.035
		11	0.021
		12	0.021
		13	0.201
		14	0.076
		15	0.215
		16	0.007
30	VGL2409	13	0.056
		14	0.403
		15	0.049
		16	0.028
		17	0.319
		18	0.097
		19	0.028
		20	0.021
31	VGL2918	12	0.278
		13	0.153
		14	0.201
		15	0.139
		16	0.021
		17.3	0.111
		18.3	0.083
		19.3	0.007
		20.3	0.007
32	VGL3008	10	0.014
		14	0.069
		15	0.076
		16	0.271
		17	0.125
		18	0.208
		19	0.056
		20	0.111
		22	0.049
		23	0.014
		24	0.007
33	VGL3235	12	0.132
		13	0.021
		14	0.299
		15	0.069
		16	0.139
		17	0.090
		18	0.243
		19	0.007

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	73	7.848	3.835	0.687	0.710	0.032
	SE		0.416	0.202	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	73	5.714	3.045	0.664	0.666	0.002
	SE		0.265	0.136	0.020	0.019	0.019

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	73	10	5.844	0.778	0.829	0.062
2	AHT137	73	8	3.981	0.671	0.749	0.104
3	AHTH130	73	10	4.747	0.781	0.789	0.011
4	AHTh171-A	73	10	3.584	0.708	0.721	0.018
5	AHTh260	73	8	3.945	0.743	0.747	0.005
6	AHTk211	73	6	1.776	0.347	0.437	0.205
7	AHTk253	73	5	3.038	0.667	0.671	0.006
8	C22.279	73	7	2.585	0.667	0.613	-0.087
9	FH2001	73	6	2.890	0.625	0.654	0.044
10	FH2054	73	9	3.823	0.681	0.738	0.078
11	FH2848	73	7	4.922	0.843	0.797	-0.058
12	INRA21	73	5	1.812	0.425	0.448	0.053
13	INU005	73	8	3.349	0.708	0.701	-0.010
14	INU030	73	6	3.863	0.806	0.741	-0.087
15	INU055	73	6	1.744	0.466	0.427	-0.092
16	LEI004	73	4	2.500	0.611	0.600	-0.018
17	REN105L03	73	8	4.533	0.686	0.779	0.120
18	REN162C04	73	5	3.667	0.667	0.727	0.083
19	REN169D01	73	8	3.827	0.743	0.739	-0.006
20	REN169O18	73	6	2.842	0.592	0.648	0.087
21	REN247M23	73	6	5.463	0.857	0.817	-0.049
22	REN54P11	73	7	3.570	0.681	0.720	0.055
23	REN64E19	73	6	3.682	0.726	0.728	0.003
24	VGL0760	73	9	4.033	0.708	0.752	0.058
25	VGL0910	73	9	3.509	0.694	0.715	0.029
26	VGL1063	73	13	2.521	0.569	0.603	0.056
27	VGL1165	73	16	5.331	0.750	0.812	0.077
28	VGL1828	73	7	5.179	0.708	0.807	0.122
29	VGL2009	73	8	3.646	0.681	0.726	0.062
30	VGL2409	73	8	3.557	0.750	0.719	-0.043
31	VGL2918	73	9	5.550	0.764	0.820	0.068
32	VGL3008	73	11	6.201	0.819	0.839	0.023
33	VGL3235	73	8	5.040	0.736	0.802	0.082

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	73	6	3.200	0.681	0.687	0.009
2	DLA I-4ACA	73	6	3.347	0.708	0.701	-0.010
3	DLA I-4BCT	73	6	3.257	0.736	0.693	-0.062
4	DLA1131	73	7	3.221	0.653	0.690	0.053
5	5ACA	73	5	2.197	0.571	0.545	-0.049
6	5ACT	73	5	3.032	0.611	0.670	0.088
7	5BCA	73	5	3.062	0.686	0.673	-0.018

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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