Statistics and Breed-wide Allele Frequency - Border Collie

Updated Jun 24, 2025

DLA Class I Haplotype Frequencies

DLA1 #STR typesBorder Collie (n=85)
1008386 373 289 1820.006
1011376 365 281 1800.059
1012388 369 289 1880.053
1014375 373 287 1780.071
1029380 365 281 1820.006
1030380 373 293 1780.006
1045376 371 277 1860.141
1052380 372 289 1840.012
1063382 373 289 1820.006
1066376 375 277 1780.006
1068380 373 287 1810.212
1092376 379 277 1810.006
1104386 373 289 1860.159
1222386 379 277 1810.018
1236376 379 289 1810.224
1237376 379 277 1780.006
1238376 371 277 1840.006
1239376 371 277 1810.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesBorder Collie (n=85)
2001343 324 2840.141
2002343 327 2800.153
2003343 324 2820.053
2005339 322 2800.012
2017343 322 2800.176
2022339 327 2820.006
2023341 323 2820.006
2031339 322 2820.006
2033339 323 2820.006
2037341 327 2800.071
2039345 327 2760.124
2040345 327 2800.006
2052345 321 2800.006
2053343 324 2800.071
2065339 325 2860.012
2067343 322 2840.071
2075341 327 2820.012
2096351 322 2800.029
2125351 322 2860.029
2141343 331 2800.006
2142345 333 2760.006

Allele Frequencies

#Locus NameAlleleBorder Collie (n=91)
1AHT121 920.067
940.106
980.056
1000.106
1020.206
1040.039
1060.244
1080.133
1100.017
1120.028
2AHT137 1310.247
1370.060
1410.016
1430.005
1450.401
1470.060
1490.104
1510.011
1530.093
3AHTH130 1170.005
1190.027
1210.352
1230.005
1250.022
1270.115
1290.049
1310.231
1330.066
1350.126
4AHTh171-A 2190.022
2210.017
2250.122
2270.011
2290.122
2310.006
2330.439
2350.028
2370.228
2410.006
5AHTh260 2380.148
2400.244
2420.142
2440.011
2460.403
2480.040
2520.006
2540.006
6AHTk211 870.117
890.094
910.728
930.017
950.011
970.033
7AHTk253 2840.111
2860.083
2880.383
2900.011
2920.411
8C22.279 1140.044
1160.233
1180.622
1200.011
1240.061
1260.017
1280.011
9FH2001 1280.056
1320.417
1360.050
1400.011
1440.406
1480.061
10FH2054 1440.006
1480.106
1520.444
1560.122
1600.228
1640.033
1680.050
1720.006
1760.006
11FH2848 2320.023
2340.148
2360.017
2380.091
2400.210
2420.273
2440.239
12INRA21 910.093
950.731
970.077
1010.088
1030.011
13INU005 1100.128
1200.006
1220.006
1240.333
1260.094
1280.017
1300.006
1320.411
14INU030 1440.217
1480.039
1500.344
1520.278
1540.117
1560.006
15INU055 2080.159
2100.747
2120.022
2140.016
2160.033
2180.022
16LEI004 850.250
950.561
1050.006
1070.161
1110.022
17REN105L03 2270.034
2310.034
2330.284
2350.125
2370.074
2390.159
2410.284
2450.006
18REN162C04 2000.111
2020.383
2040.289
2060.067
2080.150
19REN169D01 2020.136
2100.148
2120.097
2140.006
2160.443
2180.148
2200.017
2240.006
20REN169O18 1600.022
1620.067
1640.090
1660.017
1680.506
1700.298
21REN247M23 2660.153
2680.227
2700.199
2720.210
2760.074
2780.136
22REN54P11 2220.011
2260.183
2280.039
2320.456
2340.122
2360.167
2380.022
23REN64E19 1390.016
1430.027
1450.440
1470.242
1490.165
1530.110
24VGL0760 120.050
140.272
150.022
18.20.056
20.20.144
21.20.350
22.20.017
23.20.083
24.20.006
25VGL0910 16.10.028
17.10.461
18.10.139
19.10.200
20.10.072
21.10.033
22.10.050
23.10.011
24.10.006
26VGL1063 80.044
90.617
110.006
120.039
130.039
140.094
150.089
170.011
180.006
190.011
200.028
210.011
220.006
27VGL1165 140.011
150.006
170.011
180.006
200.350
210.189
220.011
230.006
240.006
250.011
260.122
270.050
280.106
290.022
300.089
310.006
28VGL1828 150.122
160.100
170.306
190.078
200.033
210.222
220.139
29VGL2009 90.406
100.028
110.028
120.017
130.194
140.072
150.250
160.006
30VGL2409 130.061
140.383
150.039
160.033
170.339
180.089
190.033
200.022
31VGL2918 120.239
130.156
140.233
150.117
160.017
17.30.144
18.30.083
19.30.006
20.30.006
32VGL3008 100.017
140.056
150.083
160.272
170.150
180.189
190.050
200.100
210.006
220.061
230.011
240.006
33VGL3235 120.161
130.017
140.278
150.072
160.117
170.083
180.267
190.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

  NNaNeHoHeF
Mean917.9393.8260.6840.7060.031
 SE 0.4180.2130.0190.0190.010

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

  NNaNeHoHeF
Mean916.2863.0060.6720.660-0.020
 SE 0.3890.1490.0210.0220.015

Standard genetic assessment for individual STR loci

Border Collie

#LocusNNaNeHoHeF
1AHT12191106.5720.8220.8480.030
2AHT1379194.0100.7030.7510.063
3AHTH13091104.6670.7800.7860.007
4AHTh171-A91103.6220.7330.724-0.013
5AHTh2609183.7560.7270.7340.009
6AHTk2119161.8060.3780.4460.154
7AHTk2539152.9820.6560.6650.014
8C22.2799172.2330.5670.552-0.026
9FH20019162.8770.6000.6520.080
10FH20549193.5820.6560.7210.091
11FH28489174.8450.8180.794-0.031
12INRA219151.7970.4180.4430.058
13INU0059183.2710.6780.6940.024
14INU0309163.8770.7890.742-0.063
15INU0559161.7060.4510.414-0.089
16LEI0049152.4760.6220.596-0.044
17REN105L039184.7580.7050.7900.108
18REN162C049153.7080.6560.7300.102
19REN169D019183.7270.7500.732-0.025
20REN169O189162.7950.6070.6420.055
21REN247M239165.4650.8520.817-0.043
22REN54P119173.4970.6890.7140.035
23REN64E199163.4250.7140.708-0.009
24VGL07609194.3330.7560.7690.018
25VGL09109193.5500.7220.718-0.005
26VGL106391132.4790.5560.5970.069
27VGL116591165.1070.7780.8040.033
28VGL18289175.1510.7000.8060.131
29VGL20099183.6780.6440.7280.115
30VGL24099183.6020.7440.722-0.031
31VGL29189195.6350.7330.8230.108
32VGL300891126.2890.8220.8410.022
33VGL32359184.9920.7330.8000.083

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#LocusNNaNeHoHeF
1DLA I-3CCA9163.3420.7240.701-0.033
2DLA I-4ACA9173.2900.7330.696-0.054
3DLA I-4BCT9163.1260.7110.680-0.046
4DLA11319173.1070.6560.6780.033
55ACA9152.0970.5570.523-0.064
65ACT9183.1730.6560.6850.043
75BCA9152.9080.6700.656-0.022