Statistics and Breed-wide Allele Frequency - Border Collie

Updated Nov 13, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=85)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.059
1012	388 369 289 188	0.053
1014	375 373 287 178	0.071
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.141
1052	380 372 289 184	0.012
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.212
1092	376 379 277 181	0.006
1104	386 373 289 186	0.159
1222	386 379 277 181	0.018
1236	376 379 289 181	0.224
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=85)
2001	343 324 284	0.141
2002	343 327 280	0.153
2003	343 324 282	0.053
2005	339 322 280	0.012
2017	343 322 280	0.176
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.006
2037	341 327 280	0.071
2039	345 327 276	0.124
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.071
2065	339 325 286	0.012
2067	343 322 284	0.071
2075	341 327 282	0.012
2096	351 322 280	0.029
2125	351 322 286	0.029
2141	343 331 280	0.006
2142	345 333 276	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=91)
1	AHT121	92	0.067
		94	0.106
		98	0.056
		100	0.106
		102	0.206
		104	0.039
		106	0.244
		108	0.133
		110	0.017
		112	0.028
2	AHT137	131	0.247
		137	0.060
		141	0.016
		143	0.005
		145	0.401
		147	0.060
		149	0.104
		151	0.011
		153	0.093
3	AHTH130	117	0.005
		119	0.027
		121	0.352
		123	0.005
		125	0.022
		127	0.115
		129	0.049
		131	0.231
		133	0.066
		135	0.126
4	AHTh171-A	219	0.022
		221	0.017
		225	0.122
		227	0.011
		229	0.122
		231	0.006
		233	0.439
		235	0.028
		237	0.228
		241	0.006
5	AHTh260	238	0.148
		240	0.244
		242	0.142
		244	0.011
		246	0.403
		248	0.040
		252	0.006
		254	0.006
6	AHTk211	87	0.117
		89	0.094
		91	0.728
		93	0.017
		95	0.011
		97	0.033
7	AHTk253	284	0.111
		286	0.083
		288	0.383
		290	0.011
		292	0.411
8	C22.279	114	0.044
		116	0.233
		118	0.622
		120	0.011
		124	0.061
		126	0.017
		128	0.011
9	FH2001	128	0.056
		132	0.417
		136	0.050
		140	0.011
		144	0.406
		148	0.061
10	FH2054	144	0.006
		148	0.106
		152	0.444
		156	0.122
		160	0.228
		164	0.033
		168	0.050
		172	0.006
		176	0.006
11	FH2848	232	0.023
		234	0.148
		236	0.017
		238	0.091
		240	0.210
		242	0.273
		244	0.239
12	INRA21	91	0.093
		95	0.731
		97	0.077
		101	0.088
		103	0.011
13	INU005	110	0.128
		120	0.006
		122	0.006
		124	0.333
		126	0.094
		128	0.017
		130	0.006
		132	0.411
14	INU030	144	0.217
		148	0.039
		150	0.344
		152	0.278
		154	0.117
		156	0.006
15	INU055	208	0.159
		210	0.747
		212	0.022
		214	0.016
		216	0.033
		218	0.022
16	LEI004	85	0.250
		95	0.561
		105	0.006
		107	0.161
		111	0.022
17	REN105L03	227	0.034
		231	0.034
		233	0.284
		235	0.125
		237	0.074
		239	0.159
		241	0.284
		245	0.006
18	REN162C04	200	0.111
		202	0.383
		204	0.289
		206	0.067
		208	0.150
19	REN169D01	202	0.136
		210	0.148
		212	0.097
		214	0.006
		216	0.443
		218	0.148
		220	0.017
		224	0.006
20	REN169O18	160	0.022
		162	0.067
		164	0.090
		166	0.017
		168	0.506
		170	0.298
21	REN247M23	266	0.153
		268	0.227
		270	0.199
		272	0.210
		276	0.074
		278	0.136
22	REN54P11	222	0.011
		226	0.183
		228	0.039
		232	0.456
		234	0.122
		236	0.167
		238	0.022
23	REN64E19	139	0.016
		143	0.027
		145	0.440
		147	0.242
		149	0.165
		153	0.110
24	VGL0760	12	0.050
		14	0.272
		15	0.022
		18.2	0.056
		20.2	0.144
		21.2	0.350
		22.2	0.017
		23.2	0.083
		24.2	0.006
25	VGL0910	16.1	0.028
		17.1	0.461
		18.1	0.139
		19.1	0.200
		20.1	0.072
		21.1	0.033
		22.1	0.050
		23.1	0.011
		24.1	0.006
26	VGL1063	8	0.044
		9	0.617
		11	0.006
		12	0.039
		13	0.039
		14	0.094
		15	0.089
		17	0.011
		18	0.006
		19	0.011
		20	0.028
		21	0.011
		22	0.006
27	VGL1165	14	0.011
		15	0.006
		17	0.011
		18	0.006
		20	0.350
		21	0.189
		22	0.011
		23	0.006
		24	0.006
		25	0.011
		26	0.122
		27	0.050
		28	0.106
		29	0.022
		30	0.089
		31	0.006
28	VGL1828	15	0.122
		16	0.100
		17	0.306
		19	0.078
		20	0.033
		21	0.222
		22	0.139
29	VGL2009	9	0.406
		10	0.028
		11	0.028
		12	0.017
		13	0.194
		14	0.072
		15	0.250
		16	0.006
30	VGL2409	13	0.061
		14	0.383
		15	0.039
		16	0.033
		17	0.339
		18	0.089
		19	0.033
		20	0.022
31	VGL2918	12	0.239
		13	0.156
		14	0.233
		15	0.117
		16	0.017
		17.3	0.144
		18.3	0.083
		19.3	0.006
		20.3	0.006
32	VGL3008	10	0.017
		14	0.056
		15	0.083
		16	0.272
		17	0.150
		18	0.189
		19	0.050
		20	0.100
		21	0.006
		22	0.061
		23	0.011
		24	0.006
33	VGL3235	12	0.161
		13	0.017
		14	0.278
		15	0.072
		16	0.117
		17	0.083
		18	0.267
		19	0.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	91	7.939	3.826	0.684	0.706	0.031
	SE		0.418	0.213	0.019	0.019	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	91	6.286	3.006	0.672	0.660	-0.020
	SE		0.389	0.149	0.021	0.022	0.015

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	91	10	6.572	0.822	0.848	0.030
2	AHT137	91	9	4.010	0.703	0.751	0.063
3	AHTH130	91	10	4.667	0.780	0.786	0.007
4	AHTh171-A	91	10	3.622	0.733	0.724	-0.013
5	AHTh260	91	8	3.756	0.727	0.734	0.009
6	AHTk211	91	6	1.806	0.378	0.446	0.154
7	AHTk253	91	5	2.982	0.656	0.665	0.014
8	C22.279	91	7	2.233	0.567	0.552	-0.026
9	FH2001	91	6	2.877	0.600	0.652	0.080
10	FH2054	91	9	3.582	0.656	0.721	0.091
11	FH2848	91	7	4.845	0.818	0.794	-0.031
12	INRA21	91	5	1.797	0.418	0.443	0.058
13	INU005	91	8	3.271	0.678	0.694	0.024
14	INU030	91	6	3.877	0.789	0.742	-0.063
15	INU055	91	6	1.706	0.451	0.414	-0.089
16	LEI004	91	5	2.476	0.622	0.596	-0.044
17	REN105L03	91	8	4.758	0.705	0.790	0.108
18	REN162C04	91	5	3.708	0.656	0.730	0.102
19	REN169D01	91	8	3.727	0.750	0.732	-0.025
20	REN169O18	91	6	2.795	0.607	0.642	0.055
21	REN247M23	91	6	5.465	0.852	0.817	-0.043
22	REN54P11	91	7	3.497	0.689	0.714	0.035
23	REN64E19	91	6	3.425	0.714	0.708	-0.009
24	VGL0760	91	9	4.333	0.756	0.769	0.018
25	VGL0910	91	9	3.550	0.722	0.718	-0.005
26	VGL1063	91	13	2.479	0.556	0.597	0.069
27	VGL1165	91	16	5.107	0.778	0.804	0.033
28	VGL1828	91	7	5.151	0.700	0.806	0.131
29	VGL2009	91	8	3.678	0.644	0.728	0.115
30	VGL2409	91	8	3.602	0.744	0.722	-0.031
31	VGL2918	91	9	5.635	0.733	0.823	0.108
32	VGL3008	91	12	6.289	0.822	0.841	0.022
33	VGL3235	91	8	4.992	0.733	0.800	0.083

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	91	6	3.342	0.724	0.701	-0.033
2	DLA I-4ACA	91	7	3.290	0.733	0.696	-0.054
3	DLA I-4BCT	91	6	3.126	0.711	0.680	-0.046
4	DLA1131	91	7	3.107	0.656	0.678	0.033
5	5ACA	91	5	2.097	0.557	0.523	-0.064
6	5ACT	91	8	3.173	0.656	0.685	0.043
7	5BCA	91	5	2.908	0.670	0.656	-0.022

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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