Statistics and Breed-wide Allele Frequency - Border Collie

Updated Sep 26, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesBorder Collie (n=54)
1008386 373 289 1820.009
1011376 365 281 1800.074
1012388 369 289 1880.046
1014375 373 287 1780.083
1030380 373 293 1780.009
1045376 371 277 1860.167
1052380 372 289 1840.009
1068380 373 287 1810.241
1092376 379 277 1810.009
1104386 373 289 1860.120
1222386 379 277 1810.009
1236376 379 289 1810.194
1237376 379 277 1780.009
1238376 371 277 1840.009
1239376 371 277 1810.009

DLA Class II Haplotype Frequencies

DLA2 #STR typesBorder Collie (n=54)
2001343 324 2840.213
2002343 327 2800.130
2003343 324 2820.046
2005339 322 2800.009
2017343 322 2800.204
2022339 327 2820.009
2023341 323 2820.009
2031339 322 2820.009
2033339 323 2820.009
2037341 327 2800.083
2039345 327 2760.157
2053343 324 2800.028
2067343 322 2840.009
2075341 327 2820.009
2096351 322 2800.028
2125351 322 2860.046

Allele Frequencies

#Locus NameAlleleBorder Collie (n=59)
1AHT121 920.043
940.086
980.052
1000.095
1020.284
1040.017
1060.250
1080.129
1100.009
1120.034
2AHT137 1310.254
1370.068
1410.017
1450.390
1470.059
1490.119
1530.093
3AHTH130 1170.008
1190.017
1210.314
1250.034
1270.119
1290.068
1310.237
1330.042
1350.161
4AHTh171-A 2190.017
2210.009
2250.155
2270.017
2290.069
2310.009
2330.474
2350.034
2370.207
2410.009
5AHTh260 2380.161
2400.223
2420.179
2440.009
2460.357
2480.054
2520.009
2540.009
6AHTk211 870.103
890.103
910.733
930.026
950.017
970.017
7AHTk253 2840.078
2860.121
2880.353
2900.017
2920.431
8C22.279 1140.052
1160.310
1180.534
1200.017
1240.052
1260.026
1280.009
9FH2001 1280.052
1320.379
1360.026
1400.017
1440.457
1480.069
10FH2054 1440.009
1480.112
1520.431
1560.112
1600.224
1640.043
1680.052
1720.009
1760.009
11FH2848 2320.009
2340.152
2360.027
2380.098
2400.223
2420.295
2440.196
12INRA21 910.119
950.712
970.059
1010.102
1030.008
13INU005 1100.129
1200.009
1220.009
1240.302
1260.112
1280.017
1300.009
1320.414
14INU030 1440.190
1480.052
1500.345
1520.319
1540.095
15INU055 2080.195
2100.712
2120.008
2140.008
2160.042
2180.034
16LEI004 850.250
950.560
1070.172
1110.017
17REN105L03 2270.045
2310.036
2330.214
2350.170
2370.045
2390.170
2410.313
2450.009
18REN162C04 2000.086
2020.397
2040.267
2060.086
2080.164
19REN169D01 2020.179
2100.107
2120.080
2140.009
2160.438
2180.161
2200.018
2240.009
20REN169O18 1600.018
1620.053
1640.123
1660.026
1680.430
1700.351
21REN247M23 2660.143
2680.232
2700.188
2720.214
2760.080
2780.143
22REN54P11 2220.017
2260.155
2280.009
2320.491
2340.112
2360.181
2380.034
23REN64E19 1390.017
1430.034
1450.415
1470.246
1490.153
1530.136
24VGL0760 120.069
140.267
150.009
18.20.026
20.20.138
21.20.379
22.20.026
23.20.086
25VGL0910 16.10.026
17.10.457
18.10.172
19.10.181
20.10.078
21.10.026
22.10.060
26VGL1063 80.052
90.586
110.009
120.034
130.043
140.103
150.086
170.009
180.009
190.009
200.043
210.009
220.009
27VGL1165 140.009
170.017
180.009
200.336
210.172
220.017
250.009
260.138
270.069
280.078
290.034
300.103
310.009
28VGL1828 150.121
160.060
170.345
190.078
200.017
210.207
220.172
29VGL2009 90.431
100.043
110.009
120.017
130.216
140.078
150.198
160.009
30VGL2409 130.034
140.371
150.052
160.034
170.336
180.121
190.034
200.017
31VGL2918 120.302
130.138
140.172
150.138
160.017
17.30.112
18.30.103
19.30.009
20.30.009
32VGL3008 100.017
140.060
150.095
160.302
170.086
180.216
190.043
200.095
220.060
230.017
240.009
33VGL3235 120.112
130.026
140.310
150.086
160.147
170.086
180.224
190.009

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Border CollieMean597.5763.8060.6850.7100.035
 SE 0.3660.1920.0190.0180.014

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Border CollieMean595.4293.0690.6670.6690.004
 SE 0.3410.1270.0260.0170.026

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12159105.4740.7760.8170.051
2AHT1375974.0360.6610.7520.121
3AHTH1305994.9380.7970.7970.001
4AHTh171-A59103.3510.6900.7020.017
5AHTh2605984.1980.7860.762-0.031
6AHTk2115961.7870.3450.4400.217
7AHTk2535953.0160.6720.668-0.006
8C22.2795972.5750.6720.612-0.099
9FH20015962.7700.6210.6390.029
10FH20545993.7610.6720.7340.084
11FH28485974.7910.8040.791-0.016
12INRA215951.8700.4240.4650.089
13INU0055983.4240.7240.708-0.023
14INU0305953.7270.8280.732-0.131
15INU0555961.8250.4920.452-0.087
16LEI0045942.4600.6030.593-0.017
17REN105L035984.8430.6790.7940.145
18REN162C045953.6990.6030.7300.173
19REN169D015983.7380.7680.732-0.048
20REN169O185963.0610.6140.6730.088
21REN247M235965.4870.8570.818-0.048
22REN54P115973.2010.6720.6880.022
23REN64E195963.6240.6950.7240.040
24VGL07605984.0340.6900.7520.083
25VGL09105973.5430.6720.7180.063
26VGL106359132.7040.6030.6300.042
27VGL116559135.3950.7410.8150.090
28VGL18285974.6300.6720.7840.142
29VGL20095983.5730.6720.7200.066
30VGL24095983.6830.7760.728-0.065
31VGL29185995.4790.7410.8170.093
32VGL300859115.7900.8280.827-0.000
33VGL32355985.0970.7410.8040.078

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA5953.1220.6910.680-0.017
2DLA I-4ACA5963.2360.7070.691-0.023
3DLA I-4BCT5963.4260.7590.708-0.071
4DLA11315973.1380.6210.6810.089
55ACA5952.2970.5710.565-0.012
65ACT5943.0180.5860.6690.123
75BCA5953.2450.7320.692-0.058