Statistics and Breed-wide Allele Frequency - Border Collie

Updated Aug 25, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=79)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.063
1012	388 369 289 188	0.057
1014	375 373 287 178	0.076
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.152
1052	380 372 289 184	0.013
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.184
1092	376 379 277 181	0.013
1104	386 373 289 186	0.177
1132	376 379 277 184	0.006
1222	386 379 277 181	0.019
1236	376 379 289 181	0.190
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=79)
2001	343 324 284	0.165
2002	343 327 280	0.171
2003	343 324 282	0.063
2005	339 322 280	0.013
2017	343 322 280	0.196
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.013
2037	341 327 280	0.076
2039	345 327 276	0.133
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.019
2065	339 325 286	0.013
2067	343 322 284	0.019
2075	341 327 282	0.013
2096	351 322 280	0.032
2125	351 322 286	0.032
2141	343 331 280	0.006
2142	345 333 276	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=96)
1	AHT121	92	0.063
		94	0.100
		98	0.058
		100	0.111
		102	0.205
		104	0.037
		106	0.237
		108	0.147
		110	0.016
		112	0.026
2	AHT137	131	0.245
		137	0.063
		141	0.021
		143	0.005
		145	0.385
		147	0.057
		149	0.109
		151	0.021
		153	0.094
3	AHTH130	117	0.005
		119	0.026
		121	0.354
		123	0.010
		125	0.026
		127	0.109
		129	0.057
		131	0.229
		133	0.063
		135	0.120
4	AHTh171-A	219	0.021
		221	0.016
		225	0.126
		227	0.011
		229	0.116
		231	0.005
		233	0.447
		235	0.026
		237	0.226
		241	0.005
5	AHTh260	238	0.145
		240	0.253
		242	0.145
		244	0.011
		246	0.398
		248	0.038
		252	0.005
		254	0.005
6	AHTk211	87	0.111
		89	0.100
		91	0.726
		93	0.016
		95	0.011
		97	0.037
7	AHTk253	284	0.111
		286	0.084
		288	0.384
		290	0.011
		292	0.411
8	C22.279	114	0.042
		116	0.226
		118	0.626
		120	0.011
		124	0.063
		126	0.021
		128	0.011
9	FH2001	128	0.053
		132	0.416
		136	0.047
		140	0.016
		144	0.405
		148	0.063
10	FH2054	144	0.005
		148	0.105
		152	0.432
		156	0.126
		160	0.226
		164	0.037
		168	0.058
		172	0.005
		176	0.005
11	FH2848	232	0.027
		234	0.140
		236	0.022
		238	0.091
		240	0.220
		242	0.269
		244	0.231
12	INRA21	91	0.094
		95	0.729
		97	0.073
		101	0.089
		103	0.010
		105	0.005
13	INU005	110	0.126
		120	0.011
		122	0.005
		124	0.337
		126	0.100
		128	0.016
		130	0.005
		132	0.400
14	INU030	144	0.226
		148	0.037
		150	0.342
		152	0.274
		154	0.116
		156	0.005
15	INU055	208	0.156
		210	0.750
		212	0.021
		214	0.021
		216	0.031
		218	0.021
16	LEI004	85	0.258
		95	0.558
		105	0.005
		107	0.158
		111	0.021
17	REN105L03	227	0.043
		231	0.038
		233	0.280
		235	0.118
		237	0.070
		239	0.161
		241	0.285
		245	0.005
18	REN162C04	200	0.105
		202	0.389
		204	0.284
		206	0.068
		208	0.147
		212	0.005
19	REN169D01	202	0.129
		210	0.145
		212	0.091
		214	0.011
		216	0.452
		218	0.151
		220	0.016
		224	0.005
20	REN169O18	160	0.021
		162	0.064
		164	0.090
		166	0.016
		168	0.505
		170	0.303
21	REN247M23	266	0.151
		268	0.215
		270	0.199
		272	0.220
		276	0.075
		278	0.140
22	REN54P11	222	0.011
		226	0.184
		228	0.037
		232	0.453
		234	0.121
		236	0.174
		238	0.021
23	REN64E19	139	0.016
		143	0.026
		145	0.438
		147	0.234
		149	0.177
		153	0.109
24	VGL0760	12	0.047
		14	0.268
		15	0.021
		18.2	0.053
		20.2	0.153
		21.2	0.342
		22.2	0.021
		23.2	0.089
		24.2	0.005
25	VGL0910	14	0.005
		16.1	0.026
		17.1	0.458
		18.1	0.137
		19.1	0.205
		20.1	0.068
		21.1	0.032
		22.1	0.053
		23.1	0.011
		24.1	0.005
26	VGL1063	8	0.047
		9	0.616
		11	0.005
		12	0.042
		13	0.037
		14	0.089
		15	0.095
		17	0.011
		18	0.005
		19	0.011
		20	0.026
		21	0.011
		22	0.005
27	VGL1165	14	0.011
		15	0.005
		17	0.011
		18	0.005
		20	0.342
		21	0.195
		22	0.016
		23	0.005
		24	0.005
		25	0.011
		26	0.116
		27	0.047
		28	0.100
		29	0.026
		30	0.100
		31	0.005
28	VGL1828	15	0.126
		16	0.095
		17	0.316
		19	0.079
		20	0.032
		21	0.216
		22	0.132
		26	0.005
29	VGL2009	9	0.384
		10	0.026
		11	0.032
		12	0.016
		13	0.200
		14	0.079
		15	0.242
		16	0.021
30	VGL2409	13	0.068
		14	0.374
		15	0.042
		16	0.037
		17	0.332
		18	0.084
		19	0.042
		20	0.021
31	VGL2918	12	0.232
		13	0.153
		14	0.242
		15	0.121
		16	0.016
		17.3	0.137
		18.3	0.084
		19.3	0.005
		20.3	0.005
		22.3	0.005
32	VGL3008	10	0.016
		14	0.058
		15	0.084
		16	0.274
		17	0.147
		18	0.189
		19	0.047
		20	0.105
		21	0.005
		22	0.058
		23	0.011
		24	0.005
33	VGL3235	12	0.168
		13	0.021
		14	0.274
		15	0.068
		16	0.111
		17	0.084
		18	0.268
		19	0.005

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	92	8.061	3.873	0.689	0.709	0.028
	SE		0.409	0.216	0.019	0.019	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	92	6.143	2.970	0.666	0.655	-0.017
	SE		0.425	0.153	0.023	0.023	0.013

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	92	10	6.588	0.821	0.848	0.032
2	AHT137	92	9	4.214	0.698	0.763	0.085
3	AHTH130	92	10	4.696	0.792	0.787	-0.006
4	AHTh171-A	92	10	3.543	0.726	0.718	-0.012
5	AHTh260	92	8	3.761	0.742	0.734	-0.011
6	AHTk211	92	6	1.813	0.389	0.449	0.132
7	AHTk253	92	5	2.980	0.653	0.664	0.018
8	C22.279	92	7	2.223	0.568	0.550	-0.033
9	FH2001	92	6	2.887	0.611	0.654	0.066
10	FH2054	92	9	3.713	0.674	0.731	0.078
11	FH2848	92	7	4.917	0.817	0.797	-0.026
12	INRA21	92	6	1.806	0.417	0.446	0.066
13	INU005	92	8	3.335	0.684	0.700	0.023
14	INU030	92	6	3.877	0.779	0.742	-0.050
15	INU055	92	6	1.697	0.448	0.411	-0.090
16	LEI004	92	5	2.480	0.621	0.597	-0.041
17	REN105L03	92	8	4.818	0.710	0.792	0.104
18	REN162C04	92	6	3.704	0.653	0.730	0.106
19	REN169D01	92	8	3.662	0.742	0.727	-0.021
20	REN169O18	92	6	2.776	0.617	0.640	0.036
21	REN247M23	92	6	5.486	0.860	0.818	-0.052
22	REN54P11	92	7	3.502	0.705	0.714	0.013
23	REN64E19	92	6	3.441	0.719	0.709	-0.013
24	VGL0760	92	9	4.419	0.768	0.774	0.007
25	VGL0910	92	10	3.574	0.737	0.720	-0.023
26	VGL1063	92	13	2.483	0.547	0.597	0.084
27	VGL1165	92	16	5.208	0.768	0.808	0.049
28	VGL1828	92	8	5.108	0.695	0.804	0.136
29	VGL2009	92	8	3.924	0.663	0.745	0.110
30	VGL2409	92	8	3.749	0.758	0.733	-0.034
31	VGL2918	92	10	5.671	0.747	0.824	0.093
32	VGL3008	92	12	6.248	0.832	0.840	0.010
33	VGL3235	92	8	5.006	0.747	0.800	0.066

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	92	6	3.304	0.714	0.697	-0.024
2	DLA I-4ACA	92	7	3.234	0.739	0.691	-0.070
3	DLA I-4BCT	92	5	3.051	0.696	0.672	-0.035
4	DLA1131	92	7	3.025	0.652	0.669	0.026
5	5ACA	92	5	2.031	0.533	0.508	-0.049
6	5ACT	92	8	3.243	0.674	0.692	0.026
7	5BCA	92	5	2.905	0.652	0.656	0.005

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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