Statistics and Breed-wide Allele Frequency - Havanese

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesHavanese (n=520)
1003387 375 277 1860.0462
1006387 375 293 1800.0462
1011376 365 281 1800.0019
1012388 369 289 1880.0135
1014375 373 287 1780.0279
1016382 371 277 1780.2077
1018375 373 287 1860.0038
1029380 365 281 1820.0298
1030380 373 293 1780.0029
1035386 373 277 1840.0048
1040380 371 277 1860.0212
1052380 372 289 1840.0058
1054382 379 277 1840.1192
1068380 373 287 1810.0154
1084376 373 277 1840.0029
1087380 371 277 1780.0010
1092376 379 277 1810.0885
1093386 379 277 1800.0221
1105382 379 277 1780.0010
1114380 373 287 1830.0154
1115386 371 277 1820.1096
1116380 365 289 1860.0846
1117376 373 277 1800.0423
1118376 377 277 1800.0010
1119376 378 277 1800.0010
1120376 386 289 1760.0019
1121380 371 277 1830.0067
1123386 379 277 1840.0029
1124388 373 289 1780.0067
1125393 383 277 1850.0125
1126387 373 287 1820.0010
1128384 376 287 1820.0019
1129382 371 277 1810.0010
1132376 379 277 1840.0019
1133378 365 287 1720.0221
1134384 365 291 1780.0019
1136382 371 277 1820.0010
1140376 379 301 1800.0029
1142376 379 277 1800.0029
1147391 375 293 1800.0029
1148376 375 277 1800.0048
1154376 365 281 1830.0048
1155388 369 287 1840.0010
1173392 371 277 1860.0029
1180386 371 277 1810.0010

DLA Class II Haplotype Frequencies

DLA2 #STR typesHavanese (n=520)
2001343 324 2840.0500
2003343 324 2820.2183
2005339 322 2800.0019
2006339 325 2800.0029
2007351 327 2800.0490
2011345 322 2840.0010
2012345 322 2800.0058
2014339 322 2840.0067
2016339 323 2840.0154
2017343 322 2800.0067
2018339 324 2840.0173
2021339 324 2680.0019
2022339 327 2820.1144
2023341 323 2820.0029
2024343 323 2800.0029
2032339 323 2800.0250
2033339 323 2820.0019
2035341 323 2800.0010
2037341 327 2800.0279
2040345 327 2800.0029
2053343 324 2800.0365
2066339 324 2800.1837
2070347 324 2820.0837
2071339 322 2860.0067
2072339 325 2820.0154
2073339 327 2860.0077
2074341 324 2840.0442
2075341 327 2820.0298
2076345 322 2820.0067
2077347 325 2860.0221
2079343 323 2780.0019
2082339 325 2680.0048
2087347 324 2800.0010

Allele Frequencies

#Locus NameAlleleHavanese (n=522)
1AHT121 920.1123
940.0624
960.0010
980.0144
1000.0537
1020.1094
1040.5163
1060.0432
1080.0854
1120.0019
2AHT137 1310.2366
1330.0603
1370.0939
1390.0326
1410.1724
1430.1169
1450.0057
1470.1954
1490.0632
1510.0211
1550.0019
3AHTH130 1170.0307
1190.2572
1210.0576
1230.0269
1250.3676
1270.1977
1290.0355
1310.0259
1330.0010
4AHTh171-A 2190.1718
2250.2476
2270.0288
2290.2121
2310.2514
2330.0211
2350.0374
2370.0298
5AHTh260 2380.1044
2420.0096
2440.2280
2460.3027
2480.2136
2500.1015
2520.0057
2540.0307
2580.0038
6AHTk211 870.4904
890.2213
910.1485
950.1274
970.0125
7AHTk253 2840.0048
2860.0776
2880.6398
2900.0402
2920.2375
8C22.279 1160.0950
1180.2284
1200.0048
1220.0134
1240.2255
1260.1190
1280.0010
1300.3129
9FH2001 1240.0403
1280.0125
1320.4520
1360.0125
1400.0077
1440.4203
1480.0422
1520.0115
1580.0010
10FH2054 1480.0192
1520.0797
1560.2562
1600.1958
1640.0797
1680.1545
1720.1027
1760.1104
1800.0010
1840.0010
11FH2848 2300.0172
2320.2883
2340.0460
2360.0929
2380.0623
2400.2232
2420.2596
2440.0067
2460.0038
12INRA21 910.1152
950.1027
970.3781
990.0528
1010.1766
1030.1660
1050.0086
13INU005 1100.0393
1220.0086
1240.5720
1260.2303
1280.0077
1320.0259
1340.0048
1380.1113
14INU030 1440.6334
1460.0345
1480.0336
1500.1267
1520.1603
1540.0106
1560.0010
15INU055 2100.3676
2120.2015
2140.0931
2160.1564
2180.1795
2220.0019
16LEI004 830.0010
850.6286
930.0010
950.2495
970.0029
1010.0029
1050.0010
1070.1036
1090.0096
17REN105L03 2270.0077
2290.0201
2310.2136
2330.0900
2350.0029
2370.1849
2390.0172
2410.4588
2450.0048
18REN162C04 2000.0470
2020.2226
2040.0489
2060.3685
2080.1267
2100.1862
19REN169D01 2020.0690
2040.0010
2100.1801
2120.0393
2140.0412
2160.4253
2180.0603
2200.1839
20REN169O18 1600.0747
1620.2289
1640.0460
1660.2059
1680.1801
1700.2261
1720.0383
21REN247M23 2680.3774
2700.1370
2720.1734
2740.0105
2760.2634
2780.0383
22REN54P11 2220.1900
2260.2543
2280.1200
2320.1104
2340.0557
2360.0557
2380.2140
23REN64E19 1390.1507
1430.0086
1450.0960
1470.3119
1490.0144
1510.0019
1530.4002
1550.0163
24VGL0760 120.0365
130.0432
140.0912
150.0058
18.20.0931
19.20.0038
20.20.0211
21.20.2505
22.20.1689
23.20.1766
24.20.0489
25.20.0317
26.20.0278
27.20.0010
25VGL0910 130.0058
140.0134
16.10.0854
170.0134
17.10.1113
180.0269
18.10.0537
19.10.1459
20.10.0413
20.30.0048
21.10.3225
220.0345
22.10.1075
230.0250
23.10.0086
26VGL1063 80.0240
120.1008
130.0374
140.2083
150.0912
160.0067
170.1065
180.0768
190.0461
200.0643
210.0710
220.1631
230.0038
27VGL1165 140.0019
150.0010
160.0019
170.0269
180.0979
190.0221
200.0202
210.1161
220.0010
230.0403
250.0010
260.3301
270.0672
280.1958
290.0029
300.0134
310.0317
320.0106
330.0182
28VGL1828 150.0182
160.3196
170.0019
180.0317
190.0413
19.30.0048
200.0960
210.3378
220.0537
230.0940
240.0010
29VGL2009 90.0038
100.0010
110.1449
120.0211
130.2380
140.2495
150.2639
160.0768
170.0010
30VGL2409 140.0182
150.0547
160.3157
170.3560
180.2063
190.0029
200.0393
210.0067
31VGL2918 120.0470
130.2764
140.1478
150.0835
160.0134
16.30.0058
17.30.0144
18.30.0854
19.30.0259
20.30.0250
21.30.0729
22.30.1958
23.30.0067
32VGL3008 130.1353
140.0058
150.0758
160.0134
170.0883
180.1583
190.1881
200.2188
210.1017
220.0134
230.0010
33VGL3235 110.0154
120.0163
130.1094
140.2505
150.3762
160.0403
170.0355
180.0710
190.0816
200.0038

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
HavaneseMean5229.2124.4790.7270.7490.029
 SE 0.5140.2580.0160.0160.005

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
HavaneseMean5228.4293.7320.6450.6820.056
 SE 1.0850.5760.0490.0490.011

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT121522103.2540.6950.693-0.003
2AHT137522116.4300.8430.8440.002
3AHTH13052294.0440.7040.7530.064
4AHTh171-A52284.9360.7850.7970.016
5AHTh26052294.7280.7850.7880.004
6AHTk21152253.0500.6490.6720.034
7AHTk25352252.1120.4750.5270.098
8C22.27952284.4580.7500.7760.033
9FH200152292.5980.6350.615-0.033
10FH2054522106.1110.8160.8360.025
11FH284852294.6450.7820.7850.004
12INRA2152274.3790.7270.7720.057
13INU00552282.5320.5760.6050.048
14INU03052272.2450.5410.5550.024
15INU05552264.1480.7140.7590.059
16LEI00452292.1360.5320.5320.000
17REN105L0352293.3420.6780.7010.032
18REN162C0452264.1550.7500.7590.012
19REN169D0152283.8650.7240.7410.023
20REN169O1852275.3330.7910.8120.026
21REN247M2352263.8140.7260.7380.016
22REN54P1152275.5760.7910.8210.036
23REN64E1952283.4490.7020.7100.011
24VGL0760522146.7890.8200.8530.039
25VGL0910522156.0930.8040.8360.038
26VGL1063522138.4010.8560.8810.028
27VGL1165522195.5620.7390.8200.099
28VGL1828522114.1620.7830.760-0.031
29VGL200952294.6310.7560.7840.036
30VGL240952283.6500.7080.7260.024
31VGL2918522136.2450.8060.8400.040
32VGL3008522116.6260.8310.8490.021
33VGL3235522104.3230.7160.7690.069

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA522125.0800.7740.8030.037
2DLA I-4ACA522124.3760.7220.7710.065
3DLA I-4BCT52271.9110.4610.4770.034
4DLA1131522116.4120.8250.8440.022
55ACA52263.4450.6510.7100.083
65ACT52252.1520.4760.5350.111
75BCA52262.7510.6080.6360.044