Statistics and Breed-wide Allele Frequency - Havanese

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesHavanese (n=546)
1003387 375 277 1860.0485
1006387 375 293 1800.0449
1011376 365 281 1800.0018
1012388 369 289 1880.0128
1014375 373 287 1780.0266
1016382 371 277 1780.2125
1018375 373 287 1860.0037
1029380 365 281 1820.0284
1030380 373 293 1780.0027
1035386 373 277 1840.0046
1040380 371 277 1860.0211
1052380 372 289 1840.0055
1054382 379 277 1840.1209
1068380 373 287 1810.0156
1084376 373 277 1840.0027
1087380 371 277 1780.0009
1092376 379 277 1810.0870
1093386 379 277 1800.0211
1105382 379 277 1780.0009
1114380 373 287 1830.0165
1115386 371 277 1820.1062
1116380 365 289 1860.0897
1117376 373 277 1800.0421
1118376 377 277 1800.0009
1119376 378 277 1800.0009
1120376 386 289 1760.0018
1121380 371 277 1830.0064
1123386 379 277 1840.0027
1124388 373 289 1780.0064
1125393 383 277 1850.0119
1126387 373 287 1820.0009
1128384 376 287 1820.0018
1129382 371 277 1810.0009
1132376 379 277 1840.0018
1133378 365 287 1720.0211
1134384 365 291 1780.0018
1136382 371 277 1820.0009
1140376 379 301 1800.0027
1142376 379 277 1800.0027
1147391 375 293 1800.0027
1148376 375 277 1800.0046
1154376 365 281 1830.0046
1155388 369 287 1840.0009
1173392 371 277 1860.0027
1180386 371 277 1810.0009
1260387 379 277 1840.0009

DLA Class II Haplotype Frequencies

DLA2 #STR typesHavanese (n=546)
2001343 324 2840.0522
2003343 324 2820.2125
2005339 322 2800.0018
2006339 325 2800.0027
2007351 327 2800.0476
2011345 322 2840.0009
2012345 322 2800.0055
2014339 322 2840.0064
2016339 323 2840.0147
2017343 322 2800.0064
2018339 324 2840.0201
2021339 324 2680.0018
2022339 327 2820.1172
2023341 323 2820.0027
2024343 323 2800.0027
2032339 323 2800.0238
2033339 323 2820.0018
2035341 323 2800.0009
2037341 327 2800.0266
2040345 327 2800.0027
2053343 324 2800.0366
2066339 324 2800.1859
2070347 324 2820.0888
2071339 322 2860.0064
2072339 325 2820.0165
2073339 327 2860.0073
2074341 324 2840.0440
2075341 327 2820.0284
2076345 322 2820.0064
2077347 325 2860.0211
2079343 323 2780.0018
2082339 325 2680.0046
2087347 324 2800.0009

Allele Frequencies

#Locus NameAlleleHavanese (n=547)
1AHT121 920.1099
940.0614
960.0009
980.0137
1000.0531
1020.1099
1040.5183
1060.0412
1080.0897
1120.0018
2AHT137 1310.2340
1330.0585
1370.0951
1390.0338
1410.1737
1430.1133
1450.0055
1470.1993
1490.0649
1510.0201
1550.0018
3AHTH130 1170.0339
1190.2601
1210.0559
1230.0275
1250.3626
1270.1941
1290.0394
1310.0256
1330.0009
4AHTh171-A 2190.1676
2250.2573
2270.0293
2290.2088
2310.2500
2330.0201
2350.0385
2370.0284
5AHTh260 2380.1015
2420.0091
2440.2377
2460.2980
2480.2112
2500.1024
2520.0055
2540.0311
2580.0037
6AHTk211 870.4909
890.2203
910.1472
950.1298
970.0119
7AHTk253 2840.0046
2860.0786
2880.6399
2900.0384
2920.2386
8C22.279 1160.0980
1180.2198
1200.0046
1220.0128
1240.2299
1260.1163
1280.0009
1300.3178
9FH2001 1240.0403
1280.0137
1320.4469
1360.0119
1400.0073
1440.4222
1480.0458
1520.0110
1580.0009
10FH2054 1480.0183
1520.0797
1560.2518
1600.1978
1640.0788
1680.1529
1720.1007
1760.1172
1800.0018
1840.0009
11FH2848 2300.0165
2320.2952
2340.0439
2360.0914
2380.0594
2400.2176
2420.2660
2440.0064
2460.0037
12INRA21 910.1145
950.1016
970.3755
990.0504
1010.1795
1030.1685
1050.0101
13INU005 1100.0375
1220.0082
1240.5760
1260.2262
1280.0073
1320.0266
1340.0046
1380.1136
14INU030 1440.6346
1460.0330
1480.0366
1500.1273
1520.1575
1540.0101
1560.0009
15INU055 2100.3690
2120.2033
2140.0916
2160.1520
2180.1822
2220.0018
16LEI004 830.0009
850.6310
930.0009
950.2518
970.0027
1010.0027
1050.0009
1070.0998
1090.0092
17REN105L03 2270.0082
2290.0192
2310.2139
2330.0868
2350.0027
2370.1874
2390.0174
2410.4598
2450.0046
18REN162C04 2000.0476
2020.2179
2040.0513
2060.3736
2080.1236
2100.1859
19REN169D01 2020.0676
2040.0009
2100.1746
2120.0466
2140.0430
2160.4260
2180.0603
2200.1810
20REN169O18 1600.0731
1620.2340
1640.0448
1660.2020
1680.1819
1700.2276
1720.0366
21REN247M23 2680.3848
2700.1325
2720.1746
2740.0110
2760.2605
2780.0366
22REN54P11 2220.1877
2260.2564
2280.1218
2320.1081
2340.0531
2360.0559
2380.2170
23REN64E19 1390.1529
1430.0082
1450.0943
1470.3086
1490.0137
1510.0037
1530.4029
1550.0156
24VGL0760 120.0357
130.0449
140.0916
150.0055
18.20.0934
19.20.0037
20.20.0211
21.20.2537
22.20.1685
23.20.1749
24.20.0485
25.20.0311
26.20.0266
27.20.0009
25VGL0910 130.0055
140.0128
16.10.0897
170.0128
17.10.1099
180.0275
18.10.0522
19.10.1465
20.10.0394
20.30.0055
21.10.3196
220.0330
22.10.1081
230.0256
23.10.0119
26VGL1063 80.0256
120.1007
130.0357
140.2024
150.0980
160.0064
170.1035
180.0742
190.0467
200.0623
210.0760
220.1648
230.0037
27VGL1165 140.0018
150.0009
160.0018
170.0302
180.0943
190.0211
200.0192
210.1145
220.0009
230.0385
250.0009
260.3333
270.0659
280.2005
290.0046
300.0128
310.0311
320.0101
330.0174
28VGL1828 150.0192
160.3168
170.0018
180.0302
190.0394
19.30.0046
200.0980
210.3370
220.0568
230.0943
240.0018
29VGL2009 90.0046
100.0009
110.1493
120.0211
130.2408
140.2436
150.2601
160.0788
170.0009
30VGL2409 140.0174
150.0522
160.3168
170.3581
180.2088
190.0027
200.0375
210.0064
31VGL2918 120.0449
130.2811
140.1447
150.0806
160.0128
16.30.0055
17.30.0137
18.30.0815
19.30.0247
20.30.0238
21.30.0778
22.30.2024
23.30.0064
32VGL3008 130.1300
140.0064
150.0723
160.0174
170.0897
180.1612
190.1859
200.2179
210.1053
220.0128
230.0009
33VGL3235 110.0147
120.0156
130.1053
140.2537
150.3828
160.0394
170.0339
180.0696
190.0815
200.0037

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
HavaneseMean5479.2124.4670.7270.7480.028
 SE 0.5140.2580.0160.0160.005

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
HavaneseMean5478.4293.6980.6440.6800.055
 SE 1.0850.5670.0500.0490.012

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT121547103.2330.6890.6910.003
2AHT137547116.4210.8460.844-0.003
3AHTH13054794.0970.7120.7560.058
4AHTh171-A54784.9030.7800.7960.020
5AHTh26054794.7230.7790.7880.012
6AHTk21154753.0480.6510.6720.031
7AHTk25354752.1100.4790.5260.089
8C22.27954784.4360.7420.7750.042
9FH200154792.6170.6360.618-0.029
10FH2054547106.1460.8210.8370.020
11FH284854794.5580.7790.7810.002
12INRA2154774.3930.7340.7720.049
13INU00554782.5120.5710.6020.051
14INU03054772.2410.5440.5540.018
15INU05554764.1280.7050.7580.069
16LEI00454792.1210.5290.528-0.002
17REN105L0354793.3270.6730.6990.038
18REN162C0454764.1350.7580.758-0.000
19REN169D0154783.8920.7260.7430.023
20REN169O1854775.2870.7900.8110.026
21REN247M2354763.7670.7220.7350.017
22REN54P1154775.5390.7860.8190.041
23REN64E1954783.4440.7070.7100.004
24VGL0760547146.7450.8170.8520.041
25VGL0910547156.1450.8100.8370.033
26VGL1063547138.4810.8590.8820.026
27VGL1165547195.4810.7440.8180.090
28VGL1828547114.1920.7890.761-0.037
29VGL200954794.6740.7660.7860.026
30VGL240954783.6140.7070.7230.023
31VGL2918547136.1070.8060.8360.036
32VGL3008547116.6740.8330.8500.020
33VGL3235547104.2260.7090.7630.072

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA547124.9780.7710.7990.035
2DLA I-4ACA547124.3590.7250.7710.059
3DLA I-4BCT54771.9060.4620.4750.029
4DLA1131547116.3470.8240.8420.022
55ACA54763.4260.6500.7080.082
65ACT54752.1200.4670.5280.116
75BCA54762.7480.6080.6360.044