Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

Updated Apr 18, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Irish Red and White Setter (n=109)
1006	387 375 293 180	0.092
1008	386 373 289 182	0.477
1011	376 365 281 180	0.073
1014	375 373 287 178	0.087
1069	380 365 281 184	0.018
1077	376 369 291 178	0.009
1134	384 365 291 178	0.009
1175	380 375 293 180	0.110
1201	382 381 277 181	0.073
1202	390 373 289 183	0.050

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Irish Red and White Setter (n=109)
2005	339 322 280	0.128
2007	351 327 280	0.202
2012	345 322 280	0.202
2035	341 323 280	0.073
2037	341 327 280	0.028
2045	339 325 284	0.018
2052	345 321 280	0.349

Allele Frequencies

#	Locus Name	Allele	Irish Red and White Setter (n=109)
1	AHT121	94	0.009
		98	0.220
		100	0.220
		102	0.211
		104	0.115
		106	0.124
		108	0.023
		110	0.064
		112	0.014
2	AHT137	131	0.046
		137	0.073
		141	0.009
		143	0.266
		145	0.119
		147	0.321
		149	0.161
		151	0.005
3	AHTH130	117	0.404
		121	0.041
		127	0.372
		129	0.055
		131	0.128
4	AHTh171-A	219	0.037
		225	0.206
		233	0.298
		235	0.087
		237	0.183
		241	0.188
5	AHTh260	240	0.385
		246	0.193
		248	0.014
		252	0.161
		254	0.239
		256	0.009
6	AHTk211	87	0.018
		89	0.463
		91	0.197
		93	0.115
		95	0.206
7	AHTk253	286	0.225
		288	0.014
		290	0.014
		292	0.748
8	C22.279	116	0.633
		118	0.005
		120	0.119
		122	0.023
		124	0.161
		126	0.005
		130	0.055
9	FH2001	132	0.261
		136	0.289
		144	0.009
		148	0.179
		152	0.252
		156	0.009
10	FH2054	148	0.023
		152	0.069
		156	0.055
		160	0.005
		164	0.110
		168	0.587
		172	0.055
		176	0.092
		180	0.005
11	FH2848	230	0.018
		234	0.271
		236	0.133
		238	0.307
		240	0.014
		242	0.248
		246	0.009
12	INRA21	95	0.592
		97	0.078
		99	0.014
		101	0.243
		103	0.018
		105	0.055
13	INU005	110	0.060
		124	0.261
		126	0.413
		128	0.261
		132	0.005
14	INU030	144	0.335
		146	0.252
		148	0.014
		150	0.394
		154	0.005
15	INU055	208	0.005
		210	0.294
		212	0.060
		214	0.569
		216	0.014
		218	0.060
16	LEI004	85	0.326
		95	0.546
		97	0.128
17	REN105L03	231	0.014
		233	0.073
		235	0.436
		239	0.128
		241	0.339
		245	0.009
18	REN162C04	198	0.018
		202	0.596
		206	0.106
		208	0.280
19	REN169D01	212	0.693
		216	0.234
		218	0.073
20	REN169O18	162	0.482
		164	0.289
		168	0.151
		170	0.009
		172	0.069
21	REN247M23	268	0.266
		270	0.009
		272	0.394
		274	0.014
		276	0.106
		278	0.211
22	REN54P11	220	0.028
		222	0.271
		226	0.028
		232	0.275
		234	0.106
		238	0.294
23	REN64E19	139	0.009
		145	0.858
		147	0.014
		149	0.064
		153	0.055
24	VGL0760	12	0.005
		13	0.032
		14	0.445
		15	0.009
		18.2	0.060
		20.2	0.005
		21.2	0.005
		22.2	0.078
		23.2	0.041
		24.2	0.110
		25.2	0.211
25	VGL0910	13	0.005
		14	0.124
		15	0.298
		15.1	0.078
		16	0.005
		18.1	0.014
		19.1	0.197
		20.1	0.032
		21.1	0.106
		22.1	0.133
		23.1	0.009
26	VGL1063	8	0.023
		9	0.427
		13	0.106
		14	0.124
		15	0.243
		17	0.050
		18	0.023
		20	0.005
27	VGL1165	14	0.014
		15	0.307
		16	0.055
		18	0.018
		19	0.060
		21	0.083
		22	0.161
		27	0.037
		28	0.096
		29	0.014
		30	0.147
		31	0.009
28	VGL1828	14	0.005
		17	0.028
		18	0.005
		19	0.271
		20	0.261
		21	0.009
		22	0.422
29	VGL2009	13	0.243
		14	0.748
		15	0.005
		16	0.005
30	VGL2409	15	0.275
		16	0.450
		17	0.009
		18	0.156
		19	0.110
31	VGL2918	12	0.257
		13	0.046
		14	0.069
		15	0.362
		16	0.005
		17.3	0.206
		18.3	0.005
		22.3	0.005
		23.3	0.046
32	VGL3008	15	0.183
		16	0.069
		17	0.528
		18	0.147
		19	0.005
		20	0.046
		21	0.023
33	VGL3235	12	0.032
		13	0.014
		14	0.523
		15	0.417
		18	0.014

Standard genetic assessment based on 33 autosomal STR loci

Irish Red and White Setter

		N	Na	Ne	Ho	He	F
	Mean	109	6.394	3.278	0.640	0.653	0.022
	SE		0.381	0.199	0.024	0.023	0.015

Standard genetic assessment based on 7 STRs in the DLA region

Irish Red and White Setter

		N	Na	Ne	Ho	He	F
	Mean	109	5.143	2.734	0.531	0.571	0.060
	SE		0.652	0.306	0.080	0.085	0.020

Standard genetic assessment for individual STR loci

Irish Red and White Setter

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	109	9	5.718	0.835	0.825	-0.012
2	AHT137	109	8	4.515	0.771	0.779	0.010
3	AHTH130	109	5	3.103	0.697	0.678	-0.029
4	AHTh171-A	109	6	4.773	0.706	0.791	0.106
5	AHTh260	109	6	3.724	0.651	0.731	0.109
6	AHTk211	109	5	3.229	0.642	0.690	0.070
7	AHTk253	109	4	1.639	0.385	0.390	0.012
8	C22.279	109	7	2.251	0.541	0.556	0.026
9	FH2001	109	6	4.037	0.743	0.752	0.012
10	FH2054	109	9	2.655	0.606	0.623	0.029
11	FH2848	109	7	4.043	0.798	0.753	-0.061
12	INRA21	109	6	2.387	0.624	0.581	-0.074
13	INU005	109	5	3.218	0.661	0.689	0.042
14	INU030	109	5	3.015	0.679	0.668	-0.016
15	INU055	109	6	2.398	0.633	0.583	-0.086
16	LEI004	109	3	2.378	0.505	0.579	0.129
17	REN105L03	109	6	3.055	0.624	0.673	0.073
18	REN162C04	109	4	2.245	0.505	0.555	0.090
19	REN169D01	109	3	1.852	0.413	0.460	0.103
20	REN169O18	109	5	2.913	0.550	0.657	0.162
21	REN247M23	109	6	3.542	0.661	0.718	0.080
22	REN54P11	109	6	4.035	0.789	0.752	-0.049
23	REN64E19	109	5	1.345	0.211	0.257	0.178
24	VGL0760	109	11	3.743	0.706	0.733	0.036
25	VGL0910	109	11	5.574	0.872	0.821	-0.062
26	VGL1063	109	8	3.687	0.633	0.729	0.131
27	VGL1165	109	12	6.002	0.743	0.833	0.108
28	VGL1828	109	7	3.119	0.706	0.679	-0.040
29	VGL2009	109	4	1.618	0.404	0.382	-0.057
30	VGL2409	109	5	3.181	0.752	0.686	-0.097
31	VGL2918	109	9	4.017	0.734	0.751	0.023
32	VGL3008	109	7	2.934	0.651	0.659	0.012
33	VGL3235	109	5	2.227	0.679	0.551	-0.232

Standard genetic assessment for 7 STRs in the DLA region

Irish Red and White Setter

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	109	8	3.637	0.670	0.725	0.076
2	DLA I-4ACA	109	5	2.303	0.505	0.566	0.108
3	DLA I-4BCT	109	6	2.935	0.569	0.659	0.137
4	DLA1131	109	6	3.098	0.624	0.677	0.079
5	5ACA	109	4	2.663	0.606	0.625	0.030
6	5ACT	109	5	3.461	0.706	0.711	0.007
7	5BCA	109	2	1.037	0.037	0.036	-0.019

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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