Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Irish Red and White Setter (n=61)
1006	387 375 293 180	0.057
1008	386 373 289 182	0.590
1011	376 365 281 180	0.033
1014	375 373 287 178	0.041
1069	380 365 281 184	0.025
1175	380 375 293 180	0.098
1201	382 381 277 181	0.082
1202	390 373 289 183	0.074

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Irish Red and White Setter (n=61)
2005	339 322 280	0.115
2007	351 327 280	0.156
2012	345 322 280	0.189
2035	341 323 280	0.082
2045	339 325 284	0.025
2052	345 321 280	0.434

Allele Frequencies

#	Locus Name	Allele	Irish Red and White Setter (n=61)
1	AHT121	98	0.254
		100	0.197
		102	0.156
		104	0.107
		106	0.148
		108	0.025
		110	0.090
		112	0.025
2	AHT137	131	0.016
		137	0.090
		143	0.303
		145	0.082
		147	0.393
		149	0.107
		151	0.008
3	AHTH130	117	0.402
		121	0.033
		127	0.336
		129	0.049
		131	0.180
4	AHTh171-A	219	0.066
		225	0.262
		233	0.189
		235	0.057
		237	0.180
		241	0.246
5	AHTh260	240	0.377
		246	0.131
		252	0.221
		254	0.254
		256	0.016
6	AHTk211	87	0.033
		89	0.402
		91	0.189
		93	0.148
		95	0.230
7	AHTk253	286	0.189
		288	0.025
		292	0.787
8	C22.279	116	0.705
		118	0.008
		120	0.098
		124	0.156
		126	0.008
		130	0.025
9	FH2001	132	0.246
		136	0.254
		144	0.016
		148	0.189
		152	0.279
		156	0.016
10	FH2054	148	0.041
		152	0.074
		156	0.025
		164	0.082
		168	0.623
		172	0.057
		176	0.098
11	FH2848	230	0.016
		234	0.254
		236	0.115
		238	0.361
		240	0.008
		242	0.230
		246	0.016
12	INRA21	95	0.598
		97	0.082
		99	0.025
		101	0.270
		103	0.025
13	INU005	110	0.041
		124	0.320
		126	0.377
		128	0.262
14	INU030	144	0.246
		146	0.270
		148	0.016
		150	0.459
		154	0.008
15	INU055	208	0.008
		210	0.344
		212	0.033
		214	0.557
		216	0.008
		218	0.049
16	LEI004	85	0.238
		95	0.615
		97	0.148
17	REN105L03	231	0.025
		233	0.066
		235	0.402
		239	0.090
		241	0.410
		245	0.008
18	REN162C04	202	0.689
		206	0.098
		208	0.213
19	REN169D01	212	0.721
		216	0.254
		218	0.025
20	REN169O18	162	0.451
		164	0.393
		168	0.139
		170	0.008
		172	0.008
21	REN247M23	268	0.213
		270	0.016
		272	0.344
		276	0.115
		278	0.311
22	REN54P11	222	0.270
		226	0.025
		232	0.254
		234	0.172
		238	0.279
23	REN64E19	145	0.877
		147	0.008
		149	0.041
		153	0.074
24	VGL0760	12	0.008
		13	0.025
		14	0.434
		18.2	0.057
		22.2	0.082
		23.2	0.008
		24.2	0.123
		25.2	0.262
25	VGL0910	14	0.156
		15	0.361
		15.1	0.041
		16	0.008
		18.1	0.008
		19.1	0.189
		20.1	0.033
		21.1	0.131
		22.1	0.074
26	VGL1063	8	0.025
		9	0.459
		13	0.115
		14	0.090
		15	0.213
		17	0.057
		18	0.033
		20	0.008
27	VGL1165	14	0.025
		15	0.287
		16	0.090
		18	0.008
		19	0.098
		21	0.041
		22	0.172
		27	0.008
		28	0.074
		29	0.008
		30	0.180
		31	0.008
28	VGL1828	17	0.008
		19	0.295
		20	0.254
		21	0.008
		22	0.434
29	VGL2009	13	0.246
		14	0.746
		15	0.008
30	VGL2409	15	0.328
		16	0.377
		18	0.164
		19	0.131
31	VGL2918	12	0.230
		13	0.025
		14	0.049
		15	0.459
		17.3	0.189
		23.3	0.049
32	VGL3008	15	0.164
		16	0.082
		17	0.516
		18	0.172
		19	0.008
		20	0.033
		21	0.025
33	VGL3235	12	0.041
		13	0.025
		14	0.541
		15	0.377
		18	0.016

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Irish Red and White Setter	Mean	61	5.636	3.151	0.624	0.636	0.022
	SE		0.337	0.196	0.026	0.025	0.014

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Irish Red and White Setter	Mean	61	4.714	2.235	0.478	0.501	0.045
	SE		0.561	0.235	0.076	0.074	0.029

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	61	8	5.883	0.836	0.830	-0.007
2	AHT137	61	7	3.659	0.705	0.727	0.030
3	AHTH130	61	5	3.223	0.738	0.690	-0.070
4	AHTh171-A	61	6	4.880	0.754	0.795	0.052
5	AHTh260	61	5	3.661	0.738	0.727	-0.015
6	AHTk211	61	5	3.671	0.721	0.728	0.009
7	AHTk253	61	3	1.526	0.311	0.345	0.096
8	C22.279	61	6	1.881	0.426	0.468	0.090
9	FH2001	61	6	4.188	0.738	0.761	0.031
10	FH2054	61	7	2.407	0.525	0.585	0.103
11	FH2848	61	7	3.830	0.738	0.739	0.002
12	INRA21	61	5	2.277	0.574	0.561	-0.023
13	INU005	61	4	3.176	0.639	0.685	0.067
14	INU030	61	5	2.901	0.623	0.655	0.049
15	INU055	61	6	2.310	0.590	0.567	-0.041
16	LEI004	61	3	2.192	0.475	0.544	0.126
17	REN105L03	61	6	2.921	0.623	0.658	0.053
18	REN162C04	61	3	1.890	0.459	0.471	0.025
19	REN169D01	61	3	1.708	0.459	0.415	-0.107
20	REN169O18	61	5	2.648	0.574	0.622	0.078
21	REN247M23	61	5	3.644	0.607	0.726	0.164
22	REN54P11	61	5	4.071	0.754	0.754	0.000
23	REN64E19	61	4	1.288	0.180	0.224	0.194
24	VGL0760	61	8	3.529	0.705	0.717	0.016
25	VGL0910	61	9	4.643	0.770	0.785	0.018
26	VGL1063	61	8	3.540	0.623	0.718	0.132
27	VGL1165	61	12	5.874	0.754	0.830	0.091
28	VGL1828	61	5	2.937	0.689	0.660	-0.044
29	VGL2009	61	3	1.621	0.377	0.383	0.016
30	VGL2409	61	4	3.404	0.787	0.706	-0.114
31	VGL2918	61	6	3.286	0.705	0.696	-0.013
32	VGL3008	61	7	3.015	0.754	0.668	-0.128
33	VGL3235	61	5	2.286	0.639	0.563	-0.136

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	61	7	2.620	0.590	0.618	0.046
2	DLA I-4ACA	61	4	1.883	0.393	0.469	0.161
3	DLA I-4BCT	61	5	2.098	0.459	0.523	0.123
4	DLA1131	61	6	2.511	0.557	0.602	0.074
5	5ACA	61	4	2.281	0.557	0.562	0.007
6	5ACT	61	5	3.202	0.738	0.688	-0.073
7	5BCA	61	2	1.050	0.049	0.048	-0.025

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Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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