Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesIrish Red and White Setter (n=61)
1006387 375 293 1800.057
1008386 373 289 1820.590
1011376 365 281 1800.033
1014375 373 287 1780.041
1069380 365 281 1840.025
1175380 375 293 1800.098
1201382 381 277 1810.082
1202390 373 289 1830.074

DLA Class II Haplotype Frequencies

DLA2 #STR typesIrish Red and White Setter (n=61)
2005339 322 2800.115
2007351 327 2800.156
2012345 322 2800.189
2035341 323 2800.082
2045339 325 2840.025
2052345 321 2800.434

Allele Frequencies

#Locus NameAlleleIrish Red and White Setter (n=61)
1AHT121 980.254
1000.197
1020.156
1040.107
1060.148
1080.025
1100.090
1120.025
2AHT137 1310.016
1370.090
1430.303
1450.082
1470.393
1490.107
1510.008
3AHTH130 1170.402
1210.033
1270.336
1290.049
1310.180
4AHTh171-A 2190.066
2250.262
2330.189
2350.057
2370.180
2410.246
5AHTh260 2400.377
2460.131
2520.221
2540.254
2560.016
6AHTk211 870.033
890.402
910.189
930.148
950.230
7AHTk253 2860.189
2880.025
2920.787
8C22.279 1160.705
1180.008
1200.098
1240.156
1260.008
1300.025
9FH2001 1320.246
1360.254
1440.016
1480.189
1520.279
1560.016
10FH2054 1480.041
1520.074
1560.025
1640.082
1680.623
1720.057
1760.098
11FH2848 2300.016
2340.254
2360.115
2380.361
2400.008
2420.230
2460.016
12INRA21 950.598
970.082
990.025
1010.270
1030.025
13INU005 1100.041
1240.320
1260.377
1280.262
14INU030 1440.246
1460.270
1480.016
1500.459
1540.008
15INU055 2080.008
2100.344
2120.033
2140.557
2160.008
2180.049
16LEI004 850.238
950.615
970.148
17REN105L03 2310.025
2330.066
2350.402
2390.090
2410.410
2450.008
18REN162C04 2020.689
2060.098
2080.213
19REN169D01 2120.721
2160.254
2180.025
20REN169O18 1620.451
1640.393
1680.139
1700.008
1720.008
21REN247M23 2680.213
2700.016
2720.344
2760.115
2780.311
22REN54P11 2220.270
2260.025
2320.254
2340.172
2380.279
23REN64E19 1450.877
1470.008
1490.041
1530.074
24VGL0760 120.008
130.025
140.434
18.20.057
22.20.082
23.20.008
24.20.123
25.20.262
25VGL0910 140.156
150.361
15.10.041
160.008
18.10.008
19.10.189
20.10.033
21.10.131
22.10.074
26VGL1063 80.025
90.459
130.115
140.090
150.213
170.057
180.033
200.008
27VGL1165 140.025
150.287
160.090
180.008
190.098
210.041
220.172
270.008
280.074
290.008
300.180
310.008
28VGL1828 170.008
190.295
200.254
210.008
220.434
29VGL2009 130.246
140.746
150.008
30VGL2409 150.328
160.377
180.164
190.131
31VGL2918 120.230
130.025
140.049
150.459
17.30.189
23.30.049
32VGL3008 150.164
160.082
170.516
180.172
190.008
200.033
210.025
33VGL3235 120.041
130.025
140.541
150.377
180.016

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Irish Red and White SetterMean615.6363.1510.6240.6360.022
 SE 0.3370.1960.0260.0250.014

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Irish Red and White SetterMean614.7142.2350.4780.5010.045
 SE 0.5610.2350.0760.0740.029

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1216185.8830.8360.830-0.007
2AHT1376173.6590.7050.7270.030
3AHTH1306153.2230.7380.690-0.070
4AHTh171-A6164.8800.7540.7950.052
5AHTh2606153.6610.7380.727-0.015
6AHTk2116153.6710.7210.7280.009
7AHTk2536131.5260.3110.3450.096
8C22.2796161.8810.4260.4680.090
9FH20016164.1880.7380.7610.031
10FH20546172.4070.5250.5850.103
11FH28486173.8300.7380.7390.002
12INRA216152.2770.5740.561-0.023
13INU0056143.1760.6390.6850.067
14INU0306152.9010.6230.6550.049
15INU0556162.3100.5900.567-0.041
16LEI0046132.1920.4750.5440.126
17REN105L036162.9210.6230.6580.053
18REN162C046131.8900.4590.4710.025
19REN169D016131.7080.4590.415-0.107
20REN169O186152.6480.5740.6220.078
21REN247M236153.6440.6070.7260.164
22REN54P116154.0710.7540.7540.000
23REN64E196141.2880.1800.2240.194
24VGL07606183.5290.7050.7170.016
25VGL09106194.6430.7700.7850.018
26VGL10636183.5400.6230.7180.132
27VGL116561125.8740.7540.8300.091
28VGL18286152.9370.6890.660-0.044
29VGL20096131.6210.3770.3830.016
30VGL24096143.4040.7870.706-0.114
31VGL29186163.2860.7050.696-0.013
32VGL30086173.0150.7540.668-0.128
33VGL32356152.2860.6390.563-0.136

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA6172.6200.5900.6180.046
2DLA I-4ACA6141.8830.3930.4690.161
3DLA I-4BCT6152.0980.4590.5230.123
4DLA11316162.5110.5570.6020.074
55ACA6142.2810.5570.5620.007
65ACT6153.2020.7380.688-0.073
75BCA6121.0500.0490.048-0.025