Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

Updated Jun 13, 2021

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Irish Red and White Setter (n=71)
1006	387 375 293 180	0.070
1008	386 373 289 182	0.606
1011	376 365 281 180	0.028
1014	375 373 287 178	0.035
1069	380 365 281 184	0.028
1175	380 375 293 180	0.085
1201	382 381 277 181	0.085
1202	390 373 289 183	0.063

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Irish Red and White Setter (n=71)
2005	339 322 280	0.099
2007	351 327 280	0.155
2012	345 322 280	0.197
2035	341 323 280	0.085
2045	339 325 284	0.028
2052	345 321 280	0.437

Allele Frequencies

#	Locus Name	Allele	Irish Red and White Setter (n=71)
1	AHT121	98	0.225
		100	0.225
		102	0.148
		104	0.127
		106	0.155
		108	0.021
		110	0.077
		112	0.021
2	AHT137	131	0.014
		137	0.077
		143	0.324
		145	0.092
		147	0.352
		149	0.134
		151	0.007
3	AHTH130	117	0.430
		121	0.028
		127	0.331
		129	0.056
		131	0.155
4	AHTh171-A	219	0.056
		225	0.232
		233	0.254
		235	0.056
		237	0.183
		241	0.218
5	AHTh260	240	0.373
		246	0.127
		252	0.197
		254	0.289
		256	0.014
6	AHTk211	87	0.028
		89	0.444
		91	0.169
		93	0.162
		95	0.197
7	AHTk253	286	0.204
		288	0.021
		292	0.775
8	C22.279	116	0.711
		118	0.007
		120	0.120
		124	0.134
		126	0.007
		130	0.021
9	FH2001	132	0.261
		136	0.289
		144	0.014
		148	0.183
		152	0.239
		156	0.014
10	FH2054	148	0.035
		152	0.063
		156	0.021
		164	0.127
		168	0.613
		172	0.049
		176	0.085
		180	0.007
11	FH2848	230	0.014
		234	0.232
		236	0.120
		238	0.345
		240	0.007
		242	0.268
		246	0.014
12	INRA21	95	0.563
		97	0.085
		99	0.021
		101	0.310
		103	0.021
13	INU005	110	0.042
		124	0.282
		126	0.430
		128	0.246
14	INU030	144	0.261
		146	0.261
		148	0.014
		150	0.458
		154	0.007
15	INU055	208	0.007
		210	0.331
		212	0.035
		214	0.542
		216	0.007
		218	0.077
16	LEI004	85	0.268
		95	0.606
		97	0.127
17	REN105L03	231	0.021
		233	0.056
		235	0.472
		239	0.077
		241	0.366
		245	0.007
18	REN162C04	202	0.690
		206	0.085
		208	0.225
19	REN169D01	212	0.718
		216	0.261
		218	0.021
20	REN169O18	162	0.521
		164	0.345
		168	0.120
		170	0.007
		172	0.007
21	REN247M23	268	0.225
		270	0.014
		272	0.366
		276	0.120
		278	0.275
22	REN54P11	222	0.268
		226	0.021
		232	0.254
		234	0.148
		238	0.310
23	REN64E19	145	0.894
		147	0.007
		149	0.035
		153	0.063
24	VGL0760	12	0.007
		13	0.049
		14	0.430
		18.2	0.049
		22.2	0.070
		23.2	0.007
		24.2	0.141
		25.2	0.246
25	VGL0910	14	0.141
		15	0.338
		15.1	0.056
		16	0.007
		18.1	0.014
		19.1	0.197
		20.1	0.035
		21.1	0.113
		22.1	0.099
26	VGL1063	8	0.021
		9	0.408
		13	0.134
		14	0.077
		15	0.275
		17	0.049
		18	0.028
		20	0.007
27	VGL1165	14	0.021
		15	0.338
		16	0.077
		18	0.007
		19	0.092
		21	0.035
		22	0.148
		27	0.007
		28	0.063
		29	0.007
		30	0.190
		31	0.014
28	VGL1828	17	0.007
		19	0.303
		20	0.246
		21	0.007
		22	0.437
29	VGL2009	13	0.239
		14	0.754
		15	0.007
30	VGL2409	15	0.324
		16	0.380
		18	0.176
		19	0.120
31	VGL2918	12	0.232
		13	0.021
		14	0.070
		15	0.472
		17.3	0.162
		23.3	0.042
32	VGL3008	15	0.148
		16	0.077
		17	0.563
		18	0.155
		19	0.007
		20	0.028
		21	0.021
33	VGL3235	12	0.035
		13	0.021
		14	0.542
		15	0.387
		18	0.014

Standard genetic assessment based on 33 autosomal STR loci

Irish Red and White Setter

		N	Na	Ne	Ho	He	F
	Mean	71	5.667	3.112	0.622	0.632	0.016
	SE		0.342	0.191	0.025	0.025	0.015

Standard genetic assessment based on 7 STRs in the DLA region

Irish Red and White Setter

		N	Na	Ne	Ho	He	F
	Mean	71	4.714	2.200	0.481	0.496	0.030
	SE		0.561	0.231	0.076	0.072	0.028

Standard genetic assessment for individual STR loci

Irish Red and White Setter

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	71	8	5.868	0.831	0.830	-0.002
2	AHT137	71	7	3.825	0.746	0.739	-0.011
3	AHTH130	71	5	3.105	0.690	0.678	-0.018
4	AHTh171-A	71	6	4.859	0.732	0.794	0.078
5	AHTh260	71	5	3.599	0.676	0.722	0.064
6	AHTk211	71	5	3.433	0.690	0.709	0.026
7	AHTk253	71	3	1.557	0.352	0.358	0.016
8	C22.279	71	6	1.856	0.437	0.461	0.054
9	FH2001	71	6	4.124	0.732	0.757	0.033
10	FH2054	71	8	2.458	0.577	0.593	0.027
11	FH2848	71	7	3.854	0.746	0.741	-0.008
12	INRA21	71	5	2.373	0.606	0.579	-0.047
13	INU005	71	4	3.064	0.606	0.674	0.101
14	INU030	71	5	2.894	0.662	0.654	-0.012
15	INU055	71	6	2.434	0.634	0.589	-0.076
16	LEI004	71	3	2.200	0.535	0.546	0.019
17	REN105L03	71	6	2.729	0.563	0.634	0.111
18	REN162C04	71	3	1.872	0.479	0.466	-0.028
19	REN169D01	71	3	1.711	0.451	0.416	-0.084
20	REN169O18	71	5	2.469	0.507	0.595	0.148
21	REN247M23	71	5	3.638	0.620	0.725	0.145
22	REN54P11	71	5	3.934	0.789	0.746	-0.058
23	REN64E19	71	4	1.242	0.155	0.195	0.205
24	VGL0760	71	8	3.636	0.690	0.725	0.048
25	VGL0910	71	9	4.999	0.803	0.800	-0.004
26	VGL1063	71	8	3.705	0.606	0.730	0.170
27	VGL1165	71	12	5.189	0.718	0.807	0.110
28	VGL1828	71	5	2.914	0.690	0.657	-0.051
29	VGL2009	71	3	1.600	0.380	0.375	-0.015
30	VGL2409	71	4	3.391	0.803	0.705	-0.139
31	VGL2918	71	6	3.225	0.676	0.690	0.020
32	VGL3008	71	7	2.699	0.676	0.629	-0.074
33	VGL3235	71	5	2.242	0.676	0.554	-0.220

Standard genetic assessment for 7 STRs in the DLA region

Irish Red and White Setter

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	71	7	2.515	0.577	0.602	0.041
2	DLA I-4ACA	71	4	1.886	0.408	0.470	0.130
3	DLA I-4BCT	71	5	2.070	0.465	0.517	0.101
4	DLA1131	71	6	2.418	0.549	0.586	0.063
5	5ACA	71	4	2.228	0.549	0.551	0.003
6	5ACT	71	5	3.225	0.761	0.690	-0.102
7	5BCA	71	2	1.058	0.056	0.055	-0.029

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Irish Red and White Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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