Statistics and Breed-wide Allele Frequency - Irish Setter

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesIrish Setter (n=49)
1008386 373 289 1820.11
1011376 365 281 1800.10
1014375 373 287 1780.37
1054382 379 277 1840.18
1068380 373 287 1810.01
1069380 365 281 1840.03
1210380 365 277 1840.12
1211386 369 277 1830.07

DLA Class II Haplotype Frequencies

DLA2 #STR typesIrish Setter (n=49)
2005339 322 2800.04
2012345 322 2800.06
2015339 327 2800.12
2022339 327 2820.18
2037341 327 2800.37
2045339 325 2840.03
2052345 321 2800.11
2053343 324 2800.01
2114345 323 2840.07

Allele Frequencies

#Locus NameAlleleIrish Setter (n=50)
1AHT121 1000.300
1020.190
1080.040
1100.090
1120.380
2AHT137 1310.300
1370.040
1410.030
1430.090
1450.030
1470.340
1490.170
3AHTH130 1170.880
1190.040
1230.020
1270.060
4AHTh171-A 2190.100
2250.180
2270.050
2330.300
2370.370
5AHTh260 2400.060
2440.170
2460.400
2500.020
2520.240
2540.110
6AHTk211 870.100
890.100
910.750
930.050
7AHTk253 2880.130
2900.050
2920.820
8C22.279 1160.050
1180.320
1200.570
1260.020
1300.040
9FH2001 1320.060
1440.070
1480.850
1520.020
10FH2054 1520.360
1560.050
1600.010
1640.510
1680.010
1720.060
11FH2848 2300.010
2340.030
2360.380
2380.410
2400.160
2420.010
12INRA21 950.410
970.310
1010.280
13INU005 1240.710
1260.050
1320.240
14INU030 1440.480
1480.020
1500.500
15INU055 2100.330
2120.070
2140.360
2160.240
16LEI004 850.220
950.570
970.210
17REN105L03 2330.050
2350.200
2370.010
2390.670
2410.070
18REN162C04 1980.410
2020.190
2060.180
2080.220
19REN169D01 2120.370
2160.160
2180.140
2200.010
2220.320
20REN169O18 1620.180
1640.150
1660.180
1680.480
1720.010
21REN247M23 2680.750
2700.050
2740.200
22REN54P11 2220.120
2260.230
2280.140
2320.480
2380.030
23REN64E19 1390.020
1450.540
1470.380
1530.060
24VGL0760 130.110
140.820
19.20.040
20.20.010
23.20.020
25VGL0910 17.10.010
18.10.140
19.10.030
200.080
20.10.030
21.10.660
22.10.050
26VGL1063 90.190
130.290
140.030
170.150
180.340
27VGL1165 150.010
160.010
190.030
210.020
260.390
270.260
280.080
290.010
300.190
28VGL1828 140.090
160.050
200.070
210.390
220.400
29VGL2009 130.270
140.730
30VGL2409 150.190
160.620
170.050
180.060
190.080
31VGL2918 120.020
130.640
140.030
17.30.230
18.30.040
19.30.040
32VGL3008 150.290
160.060
170.280
180.260
190.020
220.040
230.030
240.020
33VGL3235 130.210
140.700
150.030
180.040
190.020

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Irish SetterMean504.8182.6350.5630.5710.007
 SE 0.2620.1530.0270.0270.017

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Irish SetterMean505.0003.0330.5370.6450.175
 SE 0.3500.2950.0440.0380.035

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1215053.5690.7600.720-0.056
2AHT1375074.0650.7400.7540.019
3AHTH1305041.2820.2400.220-0.091
4AHTh171-A5053.6790.6600.7280.094
5AHTh2605063.8080.6200.7370.159
6AHTk2115041.7090.4200.415-0.012
7AHTk2535031.4460.3600.308-0.168
8C22.2795052.3160.5800.568-0.021
9FH20015041.3670.2800.269-0.042
10FH20545062.5250.5200.6040.139
11FH28485062.9480.7000.661-0.059
12INRA215032.9190.5400.6570.179
13INU0055031.7720.4000.4360.082
14INU0305032.0800.4800.5190.076
15INU0555043.3220.8400.699-0.202
16LEI0045032.3960.6000.583-0.030
17REN105L035052.0150.5200.504-0.033
18REN162C045043.5090.7600.715-0.063
19REN169D015053.5140.6400.7150.105
20REN169O185053.1470.7200.682-0.055
21REN247M235031.6530.4600.395-0.165
22REN54P115053.1430.7000.682-0.027
23REN64E195042.2730.5600.5600.000
24VGL07605051.4560.3200.313-0.021
25VGL09105072.1460.5600.534-0.049
26VGL10635053.8580.6200.7410.163
27VGL11655093.7910.7200.7360.022
28VGL18285053.0530.7200.672-0.071
29VGL20095021.6510.3400.3940.137
30VGL24095052.3090.5800.567-0.023
31VGL29185062.1410.5000.5330.062
32VGL30085084.2190.7000.7630.083
33VGL32355051.8620.4200.4630.093

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA5064.3070.6600.7680.140
2DLA I-4ACA5052.9820.4800.6650.278
3DLA I-4BCT5043.1950.6000.6870.127
4DLA11315063.7040.6400.7300.123
55ACA5043.0360.6000.6710.105
65ACT5062.1400.4800.5330.099
75BCA5041.8650.3000.4640.353