Statistics and Breed-wide Allele Frequency - Irish Setter

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Irish Setter (n=49)
1008	386 373 289 182	0.11
1011	376 365 281 180	0.10
1014	375 373 287 178	0.37
1054	382 379 277 184	0.18
1068	380 373 287 181	0.01
1069	380 365 281 184	0.03
1210	380 365 277 184	0.12
1211	386 369 277 183	0.07

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Irish Setter (n=49)
2005	339 322 280	0.04
2012	345 322 280	0.06
2015	339 327 280	0.12
2022	339 327 282	0.18
2037	341 327 280	0.37
2045	339 325 284	0.03
2052	345 321 280	0.11
2053	343 324 280	0.01
2114	345 323 284	0.07

Allele Frequencies

#	Locus Name	Allele	Irish Setter (n=50)
1	AHT121	100	0.300
		102	0.190
		108	0.040
		110	0.090
		112	0.380
2	AHT137	131	0.300
		137	0.040
		141	0.030
		143	0.090
		145	0.030
		147	0.340
		149	0.170
3	AHTH130	117	0.880
		119	0.040
		123	0.020
		127	0.060
4	AHTh171-A	219	0.100
		225	0.180
		227	0.050
		233	0.300
		237	0.370
5	AHTh260	240	0.060
		244	0.170
		246	0.400
		250	0.020
		252	0.240
		254	0.110
6	AHTk211	87	0.100
		89	0.100
		91	0.750
		93	0.050
7	AHTk253	288	0.130
		290	0.050
		292	0.820
8	C22.279	116	0.050
		118	0.320
		120	0.570
		126	0.020
		130	0.040
9	FH2001	132	0.060
		144	0.070
		148	0.850
		152	0.020
10	FH2054	152	0.360
		156	0.050
		160	0.010
		164	0.510
		168	0.010
		172	0.060
11	FH2848	230	0.010
		234	0.030
		236	0.380
		238	0.410
		240	0.160
		242	0.010
12	INRA21	95	0.410
		97	0.310
		101	0.280
13	INU005	124	0.710
		126	0.050
		132	0.240
14	INU030	144	0.480
		148	0.020
		150	0.500
15	INU055	210	0.330
		212	0.070
		214	0.360
		216	0.240
16	LEI004	85	0.220
		95	0.570
		97	0.210
17	REN105L03	233	0.050
		235	0.200
		237	0.010
		239	0.670
		241	0.070
18	REN162C04	198	0.410
		202	0.190
		206	0.180
		208	0.220
19	REN169D01	212	0.370
		216	0.160
		218	0.140
		220	0.010
		222	0.320
20	REN169O18	162	0.180
		164	0.150
		166	0.180
		168	0.480
		172	0.010
21	REN247M23	268	0.750
		270	0.050
		274	0.200
22	REN54P11	222	0.120
		226	0.230
		228	0.140
		232	0.480
		238	0.030
23	REN64E19	139	0.020
		145	0.540
		147	0.380
		153	0.060
24	VGL0760	13	0.110
		14	0.820
		19.2	0.040
		20.2	0.010
		23.2	0.020
25	VGL0910	17.1	0.010
		18.1	0.140
		19.1	0.030
		20	0.080
		20.1	0.030
		21.1	0.660
		22.1	0.050
26	VGL1063	9	0.190
		13	0.290
		14	0.030
		17	0.150
		18	0.340
27	VGL1165	15	0.010
		16	0.010
		19	0.030
		21	0.020
		26	0.390
		27	0.260
		28	0.080
		29	0.010
		30	0.190
28	VGL1828	14	0.090
		16	0.050
		20	0.070
		21	0.390
		22	0.400
29	VGL2009	13	0.270
29	VGL2009	14	0.730
30	VGL2409	15	0.190
		16	0.620
		17	0.050
		18	0.060
		19	0.080
31	VGL2918	12	0.020
		13	0.640
		14	0.030
		17.3	0.230
		18.3	0.040
		19.3	0.040
32	VGL3008	15	0.290
		16	0.060
		17	0.280
		18	0.260
		19	0.020
		22	0.040
		23	0.030
		24	0.020
33	VGL3235	13	0.210
		14	0.700
		15	0.030
		18	0.040
		19	0.020

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Irish Setter	Mean	50	4.818	2.635	0.563	0.571	0.007
	SE		0.262	0.153	0.027	0.027	0.017

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Irish Setter	Mean	50	5.000	3.033	0.537	0.645	0.175
	SE		0.350	0.295	0.044	0.038	0.035

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	50	5	3.569	0.760	0.720	-0.056
2	AHT137	50	7	4.065	0.740	0.754	0.019
3	AHTH130	50	4	1.282	0.240	0.220	-0.091
4	AHTh171-A	50	5	3.679	0.660	0.728	0.094
5	AHTh260	50	6	3.808	0.620	0.737	0.159
6	AHTk211	50	4	1.709	0.420	0.415	-0.012
7	AHTk253	50	3	1.446	0.360	0.308	-0.168
8	C22.279	50	5	2.316	0.580	0.568	-0.021
9	FH2001	50	4	1.367	0.280	0.269	-0.042
10	FH2054	50	6	2.525	0.520	0.604	0.139
11	FH2848	50	6	2.948	0.700	0.661	-0.059
12	INRA21	50	3	2.919	0.540	0.657	0.179
13	INU005	50	3	1.772	0.400	0.436	0.082
14	INU030	50	3	2.080	0.480	0.519	0.076
15	INU055	50	4	3.322	0.840	0.699	-0.202
16	LEI004	50	3	2.396	0.600	0.583	-0.030
17	REN105L03	50	5	2.015	0.520	0.504	-0.033
18	REN162C04	50	4	3.509	0.760	0.715	-0.063
19	REN169D01	50	5	3.514	0.640	0.715	0.105
20	REN169O18	50	5	3.147	0.720	0.682	-0.055
21	REN247M23	50	3	1.653	0.460	0.395	-0.165
22	REN54P11	50	5	3.143	0.700	0.682	-0.027
23	REN64E19	50	4	2.273	0.560	0.560	0.000
24	VGL0760	50	5	1.456	0.320	0.313	-0.021
25	VGL0910	50	7	2.146	0.560	0.534	-0.049
26	VGL1063	50	5	3.858	0.620	0.741	0.163
27	VGL1165	50	9	3.791	0.720	0.736	0.022
28	VGL1828	50	5	3.053	0.720	0.672	-0.071
29	VGL2009	50	2	1.651	0.340	0.394	0.137
30	VGL2409	50	5	2.309	0.580	0.567	-0.023
31	VGL2918	50	6	2.141	0.500	0.533	0.062
32	VGL3008	50	8	4.219	0.700	0.763	0.083
33	VGL3235	50	5	1.862	0.420	0.463	0.093

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	50	6	4.307	0.660	0.768	0.140
2	DLA I-4ACA	50	5	2.982	0.480	0.665	0.278
3	DLA I-4BCT	50	4	3.195	0.600	0.687	0.127
4	DLA1131	50	6	3.704	0.640	0.730	0.123
5	5ACA	50	4	3.036	0.600	0.671	0.105
6	5ACT	50	6	2.140	0.480	0.533	0.099
7	5BCA	50	4	1.865	0.300	0.464	0.353

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Irish Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Irish Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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