Statistics and Breed-wide Allele Frequency - Magyar Agar

Updated Aug 9, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesMagyar Agar (n=77)
1003387 375 277 1860.058
1015380 373 291 1860.039
1033382 379 277 1810.097
1052380 372 289 1840.052
1054382 379 277 1840.143
1058387 378 287 1860.104
1066376 375 277 1780.084
1067376 373 277 1780.006
1104386 373 289 1860.130
1161380 379 277 1860.013
1162386 373 289 1810.078
1163389 381 277 1830.071
1164391 379 281 1810.039
1205381 379 277 1780.013
1206381 379 277 1800.013
1207386 371 277 1860.013
1208386 373 277 1810.019
1209386 378 287 1860.013
1215376 365 281 1820.006
1242382 379 277 1860.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesMagyar Agar (n=77)
2001343 324 2840.071
2006339 325 2800.195
2012345 322 2800.078
2016339 323 2840.071
2017343 322 2800.455
2029337 324 2680.006
2037341 327 2800.013
2046339 329 2800.019
2047339 331 2800.091

Allele Frequencies

#Locus NameAlleleMagyar Agar (n=78)
1AHT121 940.026
960.032
980.032
1000.090
1020.071
1040.429
1060.250
1100.006
1140.013
1180.051
2AHT137 1310.308
1330.006
1370.147
1410.160
1450.160
1470.006
1490.032
1510.038
1530.141
3AHTH130 1170.006
1190.090
1250.096
1270.481
1290.122
1310.064
1330.083
1350.045
1370.013
4AHTh171-A 2170.013
2190.167
2230.013
2250.064
2270.019
2290.391
2310.013
2330.058
2350.147
2370.115
5AHTh260 2360.045
2400.115
2440.103
2460.346
2480.006
2500.186
2520.160
2540.038
6AHTk211 870.051
890.404
910.410
930.026
950.109
7AHTk253 2840.058
2860.064
2880.308
2900.558
2920.013
8C22.279 1160.038
1180.455
1200.019
1220.006
1240.256
1260.192
1300.032
9FH2001 1320.064
1360.096
1400.032
1440.750
1480.058
10FH2054 1440.058
1520.135
1560.276
1600.250
1640.038
1680.077
1720.160
1760.006
11FH2848 2280.032
2300.071
2320.045
2360.429
2380.135
2400.122
2420.147
2440.019
12INRA21 950.256
970.160
990.481
1010.096
1050.006
13INU005 1240.288
1260.372
1280.147
1300.045
1320.147
14INU030 1440.199
1500.718
1520.083
15INU055 2080.135
2100.231
2120.269
2140.295
2160.006
2180.064
16LEI004 850.058
950.385
970.058
1050.205
1070.244
1090.013
1110.038
17REN105L03 2270.167
2290.096
2310.019
2330.218
2350.436
2390.064
18REN162C04 1980.032
2000.019
2020.474
2040.109
2060.353
2080.013
19REN169D01 2020.006
2080.032
2100.019
2120.212
2160.506
2180.006
2200.218
20REN169O18 1580.077
1600.051
1620.378
1640.218
1680.135
1700.141
21REN247M23 2660.256
2680.263
2700.173
2720.218
2760.045
2780.045
22REN54P11 2220.019
2260.205
2280.154
2320.071
2340.096
2360.212
2380.244
23REN64E19 1390.032
1410.032
1450.494
1470.353
1490.045
1510.019
1530.026
24VGL0760 120.032
18.20.436
19.20.006
20.20.314
21.20.064
22.20.103
23.20.038
24.20.006
25VGL0910 130.115
140.006
14.10.026
16.10.154
170.026
17.10.032
180.404
18.10.026
19.10.186
21.10.013
23.10.013
26VGL1063 80.051
90.090
110.071
120.122
130.276
140.071
150.154
160.160
170.006
27VGL1165 170.019
180.026
190.135
200.038
210.090
240.006
250.192
260.071
280.340
290.045
300.019
320.019
28VGL1828 150.006
160.122
170.103
180.013
190.154
200.474
210.006
220.109
230.013
29VGL2009 90.385
130.244
140.308
160.064
30VGL2409 130.340
150.122
160.077
170.205
180.205
190.019
200.032
31VGL2918 120.019
130.391
140.141
150.026
18.30.064
19.30.013
20.30.006
21.30.199
22.30.141
32VGL3008 140.051
150.051
160.103
170.506
180.160
190.032
200.032
210.064
33VGL3235 120.077
130.288
140.308
150.032
160.186
170.038
190.071

Standard genetic assessment based on 33 autosomal STR loci

Magyar Agar

  NNaNeHoHeF
Mean787.2423.8290.7250.716-0.012
 SE 0.3480.1790.0190.0160.012

Standard genetic assessment based on 7 STRs in the DLA region

Magyar Agar

  NNaNeHoHeF
Mean786.1433.3530.6320.6380.004
 SE 0.6520.5090.0640.0670.012

Standard genetic assessment for individual STR loci

Magyar Agar

#LocusNNaNeHoHeF
1AHT12178103.7660.6670.7340.092
2AHT1377895.2560.8590.810-0.061
3AHTH1307893.6160.6670.7230.078
4AHTh171-A78104.4640.7820.776-0.008
5AHTh2607884.8210.8720.793-0.100
6AHTk2117852.8850.7690.653-0.177
7AHTk2537852.4200.6280.587-0.071
8C22.2797873.1970.6670.6870.030
9FH20017851.7240.4490.420-0.069
10FH20547885.1800.8330.807-0.033
11FH28487884.0400.7690.752-0.022
12INRA217853.0130.6790.668-0.017
13INU0057853.7460.8080.733-0.102
14INU0307831.7800.3590.4380.181
15INU0557864.2560.8330.765-0.089
16LEI0047873.8810.7690.742-0.036
17REN105L037863.5840.7050.7210.022
18REN162C047862.7570.6540.637-0.026
19REN169D017872.8560.6410.6500.014
20REN169O187864.2180.7560.7630.009
21REN247M237864.6230.7180.7840.084
22REN54P117875.4220.8330.816-0.022
23REN64E197872.6810.6280.627-0.002
24VGL07607883.2690.6920.6940.003
25VGL091078114.2020.8210.762-0.077
26VGL10637896.2180.8330.8390.007
27VGL116578125.2950.7950.8110.020
28VGL18287893.4930.7820.714-0.096
29VGL20097843.2670.7180.694-0.035
30VGL24097874.5100.7050.7780.094
31VGL29187894.2100.7440.7620.025
32VGL30087883.2890.6540.6960.060
33VGL32357874.4280.8210.774-0.060

Standard genetic assessment for 7 STRs in the DLA region

Magyar Agar

#LocusNNaNeHoHeF
1DLA I-3CCA7885.6490.8330.823-0.013
2DLA I-4ACA7884.5130.7560.7780.028
3DLA I-4BCT7852.6810.6150.6270.018
4DLA11317873.9950.7310.7500.025
55ACA7852.3540.5580.5750.029
65ACT7872.9350.6540.6590.008
75BCA7831.3440.2730.256-0.066