Statistics and Breed-wide Allele Frequency - Magyar Agar

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesMagyar Agar (n=77)
1003387 375 277 1860.058
1015380 373 291 1860.039
1033382 379 277 1810.097
1052380 372 289 1840.052
1054382 379 277 1840.143
1058387 378 287 1860.104
1066376 375 277 1780.084
1067376 373 277 1780.006
1104386 373 289 1860.130
1161380 379 277 1860.013
1162386 373 289 1810.078
1163389 381 277 1830.071
1164391 379 281 1810.039
1205381 379 277 1780.013
1206381 379 277 1800.013
1207386 371 277 1860.013
1208386 373 277 1810.019
1209386 378 287 1860.013
1215376 365 281 1820.006
1242382 379 277 1860.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesMagyar Agar (n=77)
2001343 324 2840.071
2006339 325 2800.195
2012345 322 2800.078
2016339 323 2840.071
2017343 322 2800.455
2029337 324 2680.006
2037341 327 2800.013
2046339 329 2800.019
2047339 331 2800.091

Allele Frequencies

#Locus NameAlleleMagyar Agar (n=77)
1AHT121 940.026
960.032
980.032
1000.091
1020.071
1040.422
1060.253
1100.006
1140.013
1180.052
2AHT137 1310.312
1370.143
1410.162
1450.162
1470.006
1490.032
1510.039
1530.143
3AHTH130 1170.006
1190.091
1250.097
1270.481
1290.117
1310.065
1330.084
1350.045
1370.013
4AHTh171-A 2170.013
2190.169
2230.013
2250.065
2270.019
2290.383
2310.013
2330.058
2350.149
2370.117
5AHTh260 2360.045
2400.117
2440.104
2460.351
2480.006
2500.175
2520.162
2540.039
6AHTk211 870.052
890.396
910.416
930.026
950.110
7AHTk253 2840.058
2860.065
2880.305
2900.558
2920.013
8C22.279 1160.039
1180.455
1200.019
1220.006
1240.253
1260.195
1300.032
9FH2001 1320.065
1360.097
1400.032
1440.747
1480.058
10FH2054 1440.058
1520.136
1560.279
1600.247
1640.039
1680.078
1720.156
1760.006
11FH2848 2280.032
2300.071
2320.045
2360.422
2380.136
2400.123
2420.149
2440.019
12INRA21 950.260
970.162
990.474
1010.097
1050.006
13INU005 1240.286
1260.370
1280.149
1300.045
1320.149
14INU030 1440.195
1500.721
1520.084
15INU055 2080.136
2100.227
2120.273
2140.292
2160.006
2180.065
16LEI004 850.058
950.390
970.058
1050.201
1070.240
1090.013
1110.039
17REN105L03 2270.169
2290.097
2310.019
2330.221
2350.429
2390.065
18REN162C04 1980.032
2000.019
2020.474
2040.104
2060.357
2080.013
19REN169D01 2020.006
2080.032
2100.019
2120.208
2160.506
2180.006
2200.221
20REN169O18 1580.078
1600.045
1620.383
1640.221
1680.130
1700.143
21REN247M23 2660.253
2680.266
2700.175
2720.221
2760.045
2780.039
22REN54P11 2220.019
2260.208
2280.149
2320.065
2340.097
2360.214
2380.247
23REN64E19 1390.032
1410.032
1450.494
1470.351
1490.045
1510.019
1530.026
24VGL0760 120.032
18.20.435
19.20.006
20.20.312
21.20.065
22.20.104
23.20.039
24.20.006
25VGL0910 130.117
140.006
14.10.026
16.10.156
170.026
17.10.032
180.409
18.10.026
19.10.175
21.10.013
23.10.013
26VGL1063 80.052
90.091
110.071
120.123
130.279
140.071
150.149
160.162
27VGL1165 170.019
180.026
190.130
200.039
210.091
240.006
250.188
260.071
280.344
290.045
300.019
320.019
28VGL1828 150.006
160.123
170.104
180.013
190.156
200.474
210.006
220.104
230.013
29VGL2009 90.390
130.240
140.305
160.065
30VGL2409 130.344
150.117
160.078
170.201
180.208
190.019
200.032
31VGL2918 120.019
130.390
140.136
150.026
18.30.065
19.30.013
20.30.006
21.30.201
22.30.143
32VGL3008 140.052
150.045
160.104
170.506
180.162
190.032
200.032
210.065
33VGL3235 120.078
130.286
140.305
150.032
160.188
170.039
190.071

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Magyar AgarMean777.1823.8290.7250.716-0.011
 SE 0.3410.1770.0190.0160.013

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Magyar AgarMean776.1433.3400.6290.6380.007
 SE 0.6520.5030.0640.0660.012

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12177103.8260.6750.7390.086
2AHT1377785.1740.8570.807-0.063
3AHTH1307793.6240.6620.7240.085
4AHTh171-A77104.5500.7920.780-0.015
5AHTh2607784.8050.8830.792-0.115
6AHTk2117752.8970.7790.655-0.190
7AHTk2537752.4220.6230.587-0.062
8C22.2797773.2080.6620.6880.038
9FH20017751.7370.4550.424-0.072
10FH20547785.1870.8310.807-0.030
11FH28487784.1170.7790.757-0.029
12INRA217753.0480.6880.672-0.024
13INU0057753.7690.8050.735-0.096
14INU0307731.7710.3510.4350.195
15INU0557764.2690.8310.766-0.085
16LEI0047773.8680.7660.741-0.033
17REN105L037763.6360.7140.7250.015
18REN162C047762.7420.6490.635-0.022
19REN169D017772.8570.6360.6500.021
20REN169O187764.1510.7530.7590.008
21REN247M237764.5850.7140.7820.086
22REN54P117775.3660.8310.814-0.022
23REN64E197772.6900.6230.6280.008
24VGL07607783.2880.6880.6960.011
25VGL091077114.1750.8310.760-0.093
26VGL10637786.1350.8310.8370.007
27VGL116577125.2750.7920.8100.022
28VGL18287793.4940.7790.714-0.092
29VGL20097743.2590.7140.693-0.031
30VGL24097774.4780.7010.7770.097
31VGL29187794.2230.7400.7630.030
32VGL30087783.2810.6490.6950.066
33VGL32357774.4650.8180.776-0.054

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA7785.5880.8310.821-0.012
2DLA I-4ACA7784.5070.7530.7780.032
3DLA I-4BCT7752.6650.6100.6250.023
4DLA11317773.9910.7270.7490.030
55ACA7752.3540.5580.5750.029
65ACT7772.9290.6490.6590.014
75BCA7731.3440.2730.256-0.066