Statistics and Breed-wide Allele Frequency - Rat Terrier

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesRat Terrier (n=36)
1002380 365 281 1810.01
1008386 373 289 1820.03
1009382 377 277 1840.06
1011376 365 281 1800.06
1012388 369 289 1880.03
1016382 371 277 1780.03
1030380 373 293 1780.03
1040380 371 277 1860.18
1046376 379 291 1800.04
1054382 379 277 1840.01
1062382 371 277 1830.06
1074386 383 289 1860.03
1087380 371 277 1780.11
1092376 379 277 1810.06
1105382 379 277 1780.03
1128384 376 287 1820.01
1200394 367 273 1780.01
1211386 369 277 1830.04
1234380 371 281 1810.01
1252389 371 277 1820.03
1253389 365 289 1820.03
1254388 371 291 1800.01
1255388 371 277 1860.01
1256386 365 281 1800.01
1257384 376 289 1800.06
1258384 373 287 1800.01

DLA Class II Haplotype Frequencies

DLA2 #STR typesRat Terrier (n=36)
2001343 324 2840.01
2002343 327 2800.01
2003343 324 2820.08
2005339 322 2800.08
2009351 324 2800.01
2011345 322 2840.06
2012345 322 2800.01
2014339 322 2840.03
2015339 327 2800.01
2017343 322 2800.03
2021339 324 2680.03
2022339 327 2820.17
2023341 323 2820.03
2025351 321 2800.08
2028345 327 2880.10
2031339 322 2820.11
2035341 323 2800.01
2037341 327 2800.06
2040345 327 2800.01
2043343 324 2960.01
2079343 323 2780.01
2081343 322 2820.03

Allele Frequencies

#Locus NameAlleleRat Terrier (n=36)
1AHT121 920.10
940.03
960.04
980.18
1000.26
1020.01
1040.14
1060.14
1080.07
1100.03
2AHT137 1310.28
1330.04
1370.13
1390.04
1410.07
1450.08
1470.17
1490.03
1510.17
3AHTH130 1190.15
1210.17
1230.03
1250.07
1270.40
1290.13
1310.04
1330.01
4AHTh171-A 2190.31
2210.11
2250.29
2270.03
2330.14
2350.03
2370.10
5AHTh260 2340.01
2380.19
2400.01
2420.06
2440.11
2460.46
2480.08
2500.06
2520.01
6AHTk211 870.39
890.24
910.26
950.04
970.07
7AHTk253 2820.03
2840.01
2860.28
2880.25
2900.31
2920.10
2940.03
8C22.279 1140.03
1160.15
1180.13
1200.24
1220.04
1240.24
1260.18
9FH2001 1280.07
1320.11
1360.03
1400.06
1440.19
1480.32
1520.19
1580.03
10FH2054 1440.08
1480.06
1520.03
1560.40
1640.18
1680.07
1720.14
1760.03
1800.01
11FH2848 2280.07
2300.01
2340.07
2360.19
2380.18
2400.32
2420.07
2440.08
12INRA21 950.25
970.21
990.11
1010.21
1030.07
1050.15
13INU005 1060.06
1100.07
1220.01
1240.44
1260.18
1300.11
1320.13
14INU030 1440.36
1480.13
1500.43
1520.06
1560.03
15INU055 2040.06
2080.04
2100.49
2120.18
2140.01
2160.01
2180.17
2200.04
16LEI004 850.13
950.72
970.10
1010.01
1070.04
17REN105L03 2270.06
2290.17
2310.17
2330.03
2350.25
2370.06
2390.14
2410.14
18REN162C04 2000.01
2020.14
2040.24
2060.44
2080.06
2100.11
19REN169D01 2020.06
2100.07
2120.29
2140.04
2160.44
2180.03
2200.07
20REN169O18 1620.13
1640.08
1660.31
1680.19
1700.29
21REN247M23 2680.64
2700.03
2720.21
2740.04
2760.08
22REN54P11 2220.17
2260.38
2280.01
2300.01
2320.15
2340.17
2360.07
2380.04
23REN64E19 1390.07
1430.01
1450.33
1470.26
1510.06
1530.24
1550.03
24VGL0760 120.07
18.20.01
19.20.11
20.20.13
21.20.19
22.20.22
23.20.11
24.20.10
25.20.04
26.20.01
25VGL0910 130.04
15.10.01
160.04
170.01
17.10.08
18.10.07
19.10.47
20.10.18
21.10.03
22.10.01
26.10.04
26VGL1063 80.04
90.07
120.14
130.07
140.24
150.08
170.01
180.01
190.11
200.19
220.03
27VGL1165 170.03
180.10
200.06
210.22
220.15
240.01
250.08
260.06
270.03
280.11
300.01
310.14
28VGL1828 140.06
150.01
160.11
170.18
190.06
200.14
210.07
220.28
230.10
29VGL2009 90.07
100.14
110.04
130.29
140.28
150.18
30VGL2409 130.01
140.10
150.24
160.15
170.28
180.17
190.06
31VGL2918 120.06
130.28
140.26
150.07
17.30.21
18.30.07
19.30.04
21.30.01
32VGL3008 120.01
150.38
170.13
180.07
190.22
200.10
210.08
230.01
33VGL3235 90.01
110.01
120.03
130.21
140.39
150.07
160.03
170.10
180.15

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Rat TerrierMean367.7274.6010.7440.7610.020
 SE 0.3160.2310.0170.0150.015

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Rat TerrierMean367.0004.0000.8100.730-0.111
 SE 0.5350.4290.0280.0280.015

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12136106.3070.7780.8410.076
2AHT1373696.0850.6940.8360.169
3AHTH1303684.2280.8330.764-0.091
4AHTh171-A3674.5240.7500.7790.037
5AHTh2603693.6510.7220.7260.005
6AHTk2113653.5310.6390.7170.109
7AHTk2533674.0950.7780.756-0.029
8C22.2793675.3890.9170.814-0.126
9FH20013685.0140.8330.801-0.041
10FH20543694.3340.8060.769-0.047
11FH28483685.1530.8060.8060.000
12INRA213665.2680.8330.810-0.029
13INU0053673.7570.7780.734-0.060
14INU0303652.9830.6940.665-0.045
15INU0553683.2940.6110.6960.122
16LEI0043651.8230.5000.451-0.108
17REN105L033686.1130.7500.8360.103
18REN162C043663.4700.8060.712-0.132
19REN169D013673.3580.6940.7020.011
20REN169O183654.1870.5560.7610.270
21REN247M233652.1690.5280.5390.021
22REN54P113684.4160.6940.7740.102
23REN64E193674.0750.6940.7550.080
24VGL076036106.9490.8330.8560.027
25VGL091036113.6510.7500.726-0.033
26VGL106336116.9120.9170.855-0.072
27VGL116536127.7600.8330.8710.043
28VGL18283696.1710.8330.8380.006
29VGL20093664.5310.7220.7790.073
30VGL24093675.0820.7780.8030.032
31VGL29183684.8810.7500.7950.057
32VGL30083684.4010.6670.7730.137
33VGL32353694.2700.7780.766-0.016

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA3684.9470.8890.798-0.114
2DLA I-4ACA3694.0370.8610.752-0.145
3DLA I-4BCT3672.4070.6940.584-0.188
4DLA11313686.1710.9170.838-0.094
55ACA3653.6400.7780.725-0.072
65ACT3653.5170.7780.716-0.087
75BCA3673.2810.7500.695-0.079