Statistics and Breed-wide Allele Frequency - Rat Terrier

Updated Jun 17, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesRat Terrier (n=41)
1002380 365 281 1810.01
1008386 373 289 1820.02
1009382 377 277 1840.05
1011376 365 281 1800.05
1012388 369 289 1880.06
1014375 373 287 1780.01
1016382 371 277 1780.05
1030380 373 293 1780.02
1040380 371 277 1860.16
1046376 379 291 1800.04
1054382 379 277 1840.01
1062382 371 277 1830.06
1074386 383 289 1860.02
1087380 371 277 1780.11
1092376 379 277 1810.06
1105382 379 277 1780.02
1128384 376 287 1820.02
1200394 367 273 1780.01
1211386 369 277 1830.04
1234380 371 281 1810.01
1252389 371 277 1820.02
1253389 365 289 1820.02
1254388 371 291 1800.01
1255388 371 277 1860.01
1256386 365 281 1800.01
1257384 376 289 1800.05
1258384 373 287 1800.01

DLA Class II Haplotype Frequencies

DLA2 #STR typesRat Terrier (n=41)
2001343 324 2840.01
2002343 327 2800.01
2003343 324 2820.12
2005339 322 2800.07
2009351 324 2800.01
2011345 322 2840.05
2012345 322 2800.01
2014339 322 2840.02
2015339 327 2800.01
2017343 322 2800.02
2021339 324 2680.02
2022339 327 2820.15
2023341 323 2820.02
2025351 321 2800.07
2028345 327 2880.09
2031339 322 2820.13
2035341 323 2800.01
2037341 327 2800.06
2040345 327 2800.01
2043343 324 2960.01
2050341 327 2840.01
2079343 323 2780.02
2081343 322 2820.02

Allele Frequencies

#Locus NameAlleleRat Terrier (n=41)
1AHT121 920.09
940.02
960.04
980.17
1000.27
1020.01
1040.17
1060.12
1080.09
1100.02
2AHT137 1310.27
1330.04
1370.13
1390.04
1410.07
1450.12
1470.16
1490.02
1510.15
3AHTH130 1190.13
1210.15
1230.05
1250.07
1270.41
1290.12
1310.04
1330.02
4AHTh171-A 2190.30
2210.11
2230.01
2250.27
2270.04
2330.13
2350.04
2370.10
5AHTh260 2340.01
2380.21
2400.01
2420.05
2440.10
2460.46
2480.10
2500.05
2520.01
6AHTk211 870.37
890.23
910.27
950.04
970.10
7AHTk253 2820.02
2840.01
2860.26
2880.24
2900.32
2920.12
2940.02
8C22.279 1140.02
1160.15
1180.13
1200.21
1220.04
1240.26
1260.20
9FH2001 1280.06
1320.11
1360.04
1400.05
1440.20
1480.30
1520.22
1580.02
10FH2054 1440.09
1480.09
1520.04
1560.38
1600.01
1640.17
1680.06
1720.13
1760.02
1800.01
11FH2848 2280.09
2300.01
2320.02
2340.06
2360.17
2380.20
2400.28
2420.07
2440.10
12INRA21 950.24
970.18
990.12
1010.23
1030.07
1050.15
13INU005 1060.05
1100.11
1220.01
1240.43
1260.17
1300.11
1320.12
14INU030 1440.38
1480.12
1500.40
1520.07
1560.02
15INU055 2040.05
2080.04
2100.49
2120.21
2140.01
2160.01
2180.15
2200.05
16LEI004 850.16
950.71
970.09
1010.01
1070.04
17REN105L03 2270.11
2290.15
2310.16
2330.02
2350.23
2370.05
2390.13
2410.15
18REN162C04 2000.01
2020.13
2040.23
2060.45
2080.05
2100.12
19REN169D01 2020.05
2100.06
2120.27
2140.04
2160.46
2180.05
2200.07
20REN169O18 1620.13
1640.10
1660.28
1680.18
1700.30
21REN247M23 2680.63
2700.02
2720.22
2740.04
2760.09
22REN54P11 2220.17
2260.34
2280.01
2300.01
2320.17
2340.18
2360.06
2380.05
23REN64E19 1390.06
1410.01
1430.01
1450.32
1470.27
1490.01
1510.07
1530.22
1550.02
24VGL0760 120.10
18.20.02
19.20.10
20.20.12
21.20.22
22.20.21
23.20.10
24.20.09
25.20.04
26.20.01
25VGL0910 130.04
15.10.01
160.04
170.01
17.10.12
18.10.06
19.10.46
20.10.17
21.10.04
22.10.01
26.10.04
26VGL1063 80.04
90.07
120.13
130.07
140.26
150.07
170.01
180.01
190.12
200.18
220.02
27VGL1165 170.02
180.10
200.05
210.22
220.13
240.01
250.10
260.05
270.07
280.11
300.01
310.12
28VGL1828 140.06
150.04
160.10
170.18
190.05
200.13
210.07
220.28
230.09
29VGL2009 90.10
100.15
110.04
130.29
140.26
150.17
30VGL2409 130.01
140.10
150.24
160.15
170.27
180.18
190.05
31VGL2918 120.09
130.30
140.26
150.06
17.30.18
18.30.06
19.30.04
21.30.01
32VGL3008 120.01
150.39
170.13
180.06
190.23
200.09
210.07
230.01
33VGL3235 90.01
110.01
120.02
130.22
140.41
150.06
160.04
170.09
180.13

Standard genetic assessment based on 33 autosomal STR loci

Rat Terrier

  NNaNeHoHeF
Mean417.8794.6740.7490.7640.016
 SE 0.3230.2370.0160.0150.016

Standard genetic assessment based on 7 STRs in the DLA region

Rat Terrier

  NNaNeHoHeF
Mean417.1434.1300.8120.736-0.104
 SE 0.5870.4740.0310.0290.010

Standard genetic assessment for individual STR loci

Rat Terrier

#LocusNNaNeHoHeF
1AHT12141106.1580.8050.8380.039
2AHT1374196.2490.6340.8400.245
3AHTH1304184.2400.8290.764-0.085
4AHTh171-A4184.8240.7560.7930.046
5AHTh2604193.5460.6830.7180.049
6AHTk2114153.6990.6830.7300.064
7AHTk2534174.1350.8050.758-0.062
8C22.2794175.3200.8780.812-0.081
9FH20014185.0180.8290.801-0.036
10FH205441104.7490.8290.789-0.050
11FH28484195.7970.8290.827-0.002
12INRA214165.3110.8290.812-0.022
13INU0054173.9550.8050.747-0.077
14INU0304153.0700.6830.674-0.013
15INU0554183.2390.6100.6910.118
16LEI0044151.8720.5370.466-0.152
17REN105L034186.4650.7320.8450.134
18REN162C044163.4170.8290.707-0.172
19REN169D014173.3120.6830.6980.022
20REN169O184154.2990.5850.7670.237
21REN247M234152.1760.5610.540-0.038
22REN54P114184.6570.7320.7850.068
23REN64E194194.3320.7320.7690.049
24VGL076041106.9460.8050.8560.060
25VGL091041113.7270.7320.7320.000
26VGL106341116.6570.9020.850-0.062
27VGL116541128.1210.8050.8770.082
28VGL18284196.2610.8290.8400.013
29VGL20094164.7020.7560.7870.040
30VGL24094175.0400.8050.802-0.004
31VGL29184184.8030.7320.7920.076
32VGL30084184.1560.6830.7590.101
33VGL32354193.9790.7800.749-0.043

Standard genetic assessment for 7 STRs in the DLA region

Rat Terrier

#LocusNNaNeHoHeF
1DLA I-3CCA4195.3540.9020.813-0.110
2DLA I-4ACA4194.1050.8540.756-0.129
3DLA I-4BCT4172.4790.6830.597-0.145
4DLA11314186.4650.9270.845-0.096
55ACA4153.7030.7800.730-0.069
65ACT4153.6270.8050.724-0.111
75BCA4173.1780.7320.685-0.068