Statistics and Breed-wide Allele Frequency - Saint Bernard

Updated Nov 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesSaint Bernard (n=90)
1011376 365 281 1800.061
1017386 373 289 1780.117
1040380 371 277 1860.011
1062382 371 277 1830.061
1068380 373 287 1810.167
1096395 375 277 1820.394
1128384 376 287 1820.006
1141380 365 281 1800.006
1160386 369 289 1760.089
1165392 369 281 1820.067
1207386 371 277 1860.006
1221380 365 293 1800.006
1240380 369 281 1820.006
1244386 369 289 1820.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesSaint Bernard (n=90)
2001343 324 2840.017
2005339 322 2800.067
2007351 327 2800.006
2014339 322 2840.117
2021339 324 2680.061
2023341 323 2820.394
2028345 327 2880.011
2035341 323 2800.006
2053343 324 2800.144
2080339 325 2760.072
2098343 323 2820.094
2124341 322 2840.011

Allele Frequencies

#Locus NameAlleleSaint Bernard (n=90)
1AHT121 920.050
960.272
1000.067
1040.006
1060.078
1080.478
1100.006
1120.006
1140.039
2AHT137 1310.722
1330.006
1350.094
1370.011
1410.039
1470.067
1490.006
1530.056
3AHTH130 1190.061
1210.306
1250.278
1290.172
1310.111
1330.017
1350.006
1390.050
4AHTh171-A 2190.172
2210.217
2290.461
2330.083
2350.067
5AHTh260 2400.272
2440.322
2460.117
2480.283
2540.006
6AHTk211 870.017
890.028
910.250
930.467
950.239
7AHTk253 2860.050
2880.950
8C22.279 1160.283
1180.189
1200.017
1260.511
9FH2001 1320.917
1440.044
1480.039
10FH2054 1480.006
1520.022
1560.139
1600.283
1640.200
1680.250
1720.100
11FH2848 2320.067
2340.344
2360.350
2380.011
2400.006
2420.222
12INRA21 950.328
970.389
1010.283
13INU005 1100.017
1220.217
1240.172
1260.372
1280.006
1300.144
1320.072
14INU030 1440.089
1460.017
1480.194
1500.572
1520.117
1540.011
15INU055 2100.172
2180.828
16LEI004 850.411
950.361
1070.228
17REN105L03 2310.100
2330.406
2350.083
2370.167
2410.172
2450.072
18REN162C04 2020.106
2040.133
2060.589
2080.156
2100.017
19REN169D01 2020.033
2120.383
2160.133
2180.383
2200.067
20REN169O18 1620.256
1640.072
1680.561
1700.111
21REN247M23 2680.317
2700.317
2720.339
2780.028
22REN54P11 2260.072
2280.544
2320.139
2340.111
2380.133
23REN64E19 1430.111
1450.367
1470.233
1490.061
1530.228
24VGL0760 120.211
130.267
19.20.017
20.20.111
21.20.139
22.20.233
23.20.017
24.20.006
25VGL0910 120.211
17.10.006
18.10.300
19.10.183
20.10.233
21.10.067
26VGL1063 90.106
130.028
140.678
150.017
170.006
190.122
200.039
210.006
27VGL1165 130.011
140.089
180.044
190.211
200.011
210.078
230.139
240.006
280.211
290.172
300.028
28VGL1828 150.361
160.317
170.017
190.061
200.139
210.028
230.006
240.039
250.033
29VGL2009 90.222
100.011
130.067
140.606
150.094
30VGL2409 130.044
160.017
170.744
180.194
31VGL2918 130.050
140.367
150.233
160.022
17.30.167
18.30.028
19.30.128
21.30.006
32VGL3008 150.033
160.028
170.633
180.206
18.20.006
190.022
200.072
33VGL3235 130.183
140.550
150.022
160.183
170.061

Standard genetic assessment based on 33 autosomal STR loci

Saint Bernard

  NNaNeHoHeF
Mean905.6973.1360.6220.6260.010
 SE 0.3670.2010.0330.0300.014

Standard genetic assessment based on 7 STRs in the DLA region

Saint Bernard

  NNaNeHoHeF
Mean905.8573.3350.7210.697-0.033
 SE 0.3150.1310.0180.0110.017

Standard genetic assessment for individual STR loci

Saint Bernard

#LocusNNaNeHoHeF
1AHT1219093.1550.6670.6830.024
2AHT1379081.8530.5110.460-0.111
3AHTH1309084.5650.8440.781-0.081
4AHTh171-A9053.3260.6220.6990.110
5AHTh2609053.6780.7670.728-0.053
6AHTk2119052.9550.6330.6620.043
7AHTk2539021.1050.1000.095-0.053
8C22.2799042.6490.5890.6230.054
9FH20019031.1850.1670.156-0.067
10FH20549074.7040.8330.787-0.058
11FH28489063.3880.6440.7050.086
12INRA219032.9500.6780.661-0.025
13INU0059074.1400.8110.758-0.069
14INU0309062.5830.6780.613-0.106
15INU0559021.3990.2330.2850.182
16LEI0049032.8470.7000.649-0.079
17REN105L039064.0970.7330.7560.030
18REN162C049052.4990.5670.6000.055
19REN169D019053.1520.6780.6830.007
20REN169O189042.5140.5330.6020.114
21REN247M239043.1630.7220.684-0.056
22REN54P119052.8490.5780.6490.110
23REN64E199053.8930.7220.7430.028
24VGL07609084.9420.8560.798-0.073
25VGL09109064.4030.8670.773-0.121
26VGL10639082.0490.5110.5120.002
27VGL116590116.4490.8330.8450.014
28VGL18289093.8850.7110.7430.042
29VGL20099052.3280.5110.5700.104
30VGL24099041.6830.3330.4060.178
31VGL29189084.2230.7560.7630.010
32VGL30089072.2170.5000.5490.089
33VGL32359052.6740.6220.6260.006

Standard genetic assessment for 7 STRs in the DLA region

Saint Bernard

#LocusNNaNeHoHeF
1DLA I-3CCA9073.9640.7780.748-0.040
2DLA I-4ACA9063.6370.7330.725-0.011
3DLA I-4BCT9053.1590.7110.683-0.040
4DLA11319073.4870.7670.713-0.075
55ACA9052.9870.6220.6650.065
65ACT9052.9660.7000.663-0.056
75BCA9063.1410.7330.682-0.076