Statistics and Breed-wide Allele Frequency - Saint Bernard

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesSaint Bernard (n=61)
1011376 365 281 1800.066
1017386 373 289 1780.090
1040380 371 277 1860.016
1062382 371 277 1830.066
1068380 373 287 1810.148
1096395 375 277 1820.393
1128384 376 287 1820.008
1141380 365 281 1800.008
1160386 369 289 1760.098
1165392 369 281 1820.074
1207386 371 277 1860.008
1221380 365 293 1800.008
1240380 369 281 1820.008
1244386 369 289 1820.008

DLA Class II Haplotype Frequencies

DLA2 #STR typesSaint Bernard (n=61)
2001343 324 2840.016
2005339 322 2800.074
2007351 327 2800.008
2014339 322 2840.090
2021339 324 2680.066
2023341 323 2820.385
2028345 327 2880.016
2035341 323 2800.008
2053343 324 2800.131
2080339 325 2760.082
2098343 323 2820.107
2124341 322 2840.016

Allele Frequencies

#Locus NameAlleleSaint Bernard (n=61)
1AHT121 920.074
960.311
1000.074
1040.008
1060.074
1080.418
1100.008
1140.033
2AHT137 1310.705
1350.123
1370.016
1410.033
1470.066
1490.008
1530.049
3AHTH130 1190.033
1210.270
1250.295
1290.172
1310.131
1330.025
1350.008
1390.066
4AHTh171-A 2190.148
2210.180
2290.475
2330.107
2350.090
5AHTh260 2400.279
2440.336
2460.107
2480.270
2540.008
6AHTk211 870.016
890.016
910.270
930.475
950.221
7AHTk253 2860.074
2880.926
8C22.279 1160.303
1180.189
1200.008
1260.500
9FH2001 1320.926
1440.049
1480.025
10FH2054 1480.008
1520.033
1560.164
1600.279
1640.197
1680.221
1720.098
11FH2848 2320.049
2340.385
2360.377
2380.008
2400.008
2420.172
12INRA21 950.377
970.352
1010.270
13INU005 1100.025
1220.238
1240.148
1260.361
1280.008
1300.131
1320.090
14INU030 1440.057
1460.025
1480.197
1500.590
1520.123
1540.008
15INU055 2100.205
2180.795
16LEI004 850.426
950.361
1070.213
17REN105L03 2310.090
2330.443
2350.082
2370.189
2410.139
2450.057
18REN162C04 2020.107
2040.131
2060.566
2080.180
2100.016
19REN169D01 2020.049
2120.369
2160.131
2180.393
2200.057
20REN169O18 1620.320
1640.098
1680.459
1700.123
21REN247M23 2680.352
2700.336
2720.303
2780.008
22REN54P11 2260.074
2280.590
2320.098
2340.107
2380.131
23REN64E19 1430.148
1450.377
1470.230
1490.025
1530.221
24VGL0760 120.230
130.262
19.20.025
20.20.098
21.20.148
22.20.213
23.20.016
24.20.008
25VGL0910 120.262
17.10.008
18.10.270
19.10.148
20.10.230
21.10.082
26VGL1063 90.107
130.025
140.623
150.025
190.156
200.057
210.008
27VGL1165 130.008
140.082
180.033
190.221
200.016
210.082
230.164
240.008
280.164
290.180
300.041
28VGL1828 150.336
160.279
170.025
190.049
200.180
210.025
230.008
240.057
250.041
29VGL2009 90.180
100.016
130.082
140.656
150.066
30VGL2409 130.033
160.008
170.787
180.172
31VGL2918 130.066
140.402
150.205
160.016
17.30.148
18.30.016
19.30.148
32VGL3008 150.025
160.008
170.730
180.189
18.20.008
190.008
200.033
33VGL3235 130.172
140.516
150.033
160.205
170.074

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Saint BernardMean615.5763.1430.6300.624-0.003
 SE 0.3460.2080.0340.0300.015

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Saint BernardMean615.8573.3670.7140.699-0.021
 SE 0.3150.1470.0190.0120.016

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1216183.4570.7210.711-0.015
2AHT1376171.9230.5250.480-0.093
3AHTH1306184.6920.8850.787-0.125
4AHTh171-A6153.3360.6390.7000.087
5AHTh2606153.6340.7700.725-0.063
6AHTk2116152.8680.6070.6510.069
7AHTk2536121.1580.1480.137-0.080
8C22.2796142.6480.5900.6220.052
9FH20016131.1620.1480.139-0.061
10FH20546174.9250.8030.797-0.008
11FH28486163.0980.6720.6770.008
12INRA216132.9450.7380.660-0.117
13INU0056174.2670.8520.766-0.113
14INU0306162.4630.6390.594-0.076
15INU0556121.4830.2460.3260.245
16LEI0046132.8000.6720.643-0.046
17REN105L036163.7170.7050.7310.036
18REN162C046152.6230.6230.619-0.007
19REN169D016153.1870.7050.686-0.027
20REN169O186142.9610.6070.6620.084
21REN247M236143.0380.7540.671-0.124
22REN54P116152.5510.5570.6080.083
23REN64E196153.7570.7210.7340.017
24VGL07606185.0180.8360.801-0.044
25VGL09106164.4800.8690.777-0.118
26VGL10636172.3350.5570.5720.025
27VGL116561116.5860.8520.848-0.005
28VGL18286194.3140.8360.768-0.088
29VGL20096152.1110.4590.5260.128
30VGL24096141.5390.2950.3500.157
31VGL29186173.9730.6890.7480.080
32VGL30086171.7560.3930.4300.086
33VGL32356152.9000.6890.655-0.051

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA6174.0580.7870.754-0.044
2DLA I-4ACA6163.8200.7380.7380.001
3DLA I-4BCT6153.1140.6890.679-0.014
4DLA11316173.4120.7540.707-0.067
55ACA6153.0310.6230.6700.070
65ACT6152.9830.6890.665-0.036
75BCA6163.1520.7210.683-0.056