Statistics and Breed-wide Allele Frequency - Saint Bernard

Updated Jun 13, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesSaint Bernard (n=71)
1011376 365 281 1800.070
1017386 373 289 1780.085
1040380 371 277 1860.014
1062382 371 277 1830.056
1068380 373 287 1810.176
1096395 375 277 1820.408
1128384 376 287 1820.007
1141380 365 281 1800.007
1160386 369 289 1760.085
1165392 369 281 1820.063
1207386 371 277 1860.007
1221380 365 293 1800.007
1240380 369 281 1820.007
1244386 369 289 1820.007

DLA Class II Haplotype Frequencies

DLA2 #STR typesSaint Bernard (n=71)
2001343 324 2840.014
2005339 322 2800.077
2007351 327 2800.007
2014339 322 2840.085
2021339 324 2680.056
2023341 323 2820.401
2028345 327 2880.014
2035341 323 2800.007
2053343 324 2800.162
2080339 325 2760.070
2098343 323 2820.092
2124341 322 2840.014

Allele Frequencies

#Locus NameAlleleSaint Bernard (n=71)
1AHT121 920.063
960.282
1000.077
1040.007
1060.063
1080.451
1100.007
1140.049
2AHT137 1310.704
1350.113
1370.014
1410.049
1470.063
1490.007
1530.049
3AHTH130 1190.056
1210.282
1250.275
1290.162
1310.134
1330.021
1350.007
1390.063
4AHTh171-A 2190.204
2210.176
2290.444
2330.099
2350.077
5AHTh260 2400.282
2440.345
2460.092
2480.275
2540.007
6AHTk211 870.014
890.035
910.275
930.451
950.225
7AHTk253 2860.063
2880.937
8C22.279 1160.317
1180.211
1200.014
1260.458
9FH2001 1320.937
1440.042
1480.021
10FH2054 1480.007
1520.028
1560.148
1600.303
1640.190
1680.232
1720.092
11FH2848 2320.056
2340.352
2360.352
2380.007
2400.007
2420.225
12INRA21 950.359
970.338
1010.303
13INU005 1100.021
1220.232
1240.148
1260.387
1280.007
1300.127
1320.077
14INU030 1440.049
1460.021
1480.211
1500.599
1520.113
1540.007
15INU055 2100.197
2180.803
16LEI004 850.408
950.373
1070.218
17REN105L03 2310.092
2330.401
2350.092
2370.190
2410.169
2450.056
18REN162C04 2020.106
2040.148
2060.556
2080.176
2100.014
19REN169D01 2020.042
2120.380
2160.127
2180.394
2200.056
20REN169O18 1620.282
1640.085
1680.500
1700.134
21REN247M23 2680.331
2700.303
2720.331
2780.035
22REN54P11 2260.070
2280.535
2320.134
2340.106
2380.155
23REN64E19 1430.127
1450.352
1470.275
1490.035
1530.211
24VGL0760 120.211
130.246
19.20.021
20.20.127
21.20.155
22.20.218
23.20.014
24.20.007
25VGL0910 120.261
17.10.007
18.10.282
19.10.141
20.10.239
21.10.070
26VGL1063 90.113
130.021
140.641
150.021
170.007
190.141
200.049
210.007
27VGL1165 130.007
140.092
180.056
190.204
200.014
210.077
230.169
240.007
280.183
290.155
300.035
28VGL1828 150.345
160.303
170.021
190.056
200.162
210.021
230.007
240.049
250.035
29VGL2009 90.183
100.014
130.085
140.641
150.077
30VGL2409 130.028
160.007
170.810
180.155
31VGL2918 130.056
140.401
150.225
160.014
17.30.134
18.30.028
19.30.141
32VGL3008 150.021
160.035
170.676
180.204
18.20.007
190.014
200.042
33VGL3235 130.183
140.549
150.028
160.176
170.063

Standard genetic assessment based on 33 autosomal STR loci

Saint Bernard

  NNaNeHoHeF
Mean715.6063.1670.6270.6260.004
 SE 0.3510.2100.0340.0310.015

Standard genetic assessment based on 7 STRs in the DLA region

Saint Bernard

  NNaNeHoHeF
Mean715.8573.2800.7260.692-0.049
 SE 0.3150.1270.0160.0110.014

Standard genetic assessment for individual STR loci

Saint Bernard

#LocusNNaNeHoHeF
1AHT1217183.3440.6900.7010.015
2AHT1377171.9310.5350.482-0.110
3AHTH1307184.8400.9010.793-0.136
4AHTh171-A7153.5060.6200.7150.133
5AHTh2607153.5430.7750.718-0.079
6AHTk2117153.0230.6480.6690.032
7AHTk2537121.1350.1270.119-0.068
8C22.2797142.8190.6340.6450.018
9FH20017131.1370.1270.121-0.052
10FH20547174.6960.8030.787-0.020
11FH28487163.3110.6480.6980.072
12INRA217132.9850.6900.665-0.038
13INU0057174.0250.8030.752-0.068
14INU0307162.3890.6340.581-0.090
15INU0557121.4630.2540.3170.199
16LEI0047132.8260.6900.646-0.068
17REN105L037164.0690.7040.7540.066
18REN162C047152.6760.6200.6260.010
19REN169D017153.1140.7320.679-0.079
20REN169O187142.8220.5630.6460.127
21REN247M237143.2050.7460.688-0.085
22REN54P117152.9030.5920.6560.098
23REN64E197153.8260.6900.7390.066
24VGL07607185.1600.8590.806-0.066
25VGL09107164.3590.8590.771-0.115
26VGL10637182.2390.5490.5530.007
27VGL116571116.8080.8590.853-0.007
28VGL18287194.0850.7610.755-0.007
29VGL20097152.1860.4930.5420.091
30VGL24097141.4690.2680.3190.162
31VGL29187173.9400.7180.7460.037
32VGL30087171.9900.4510.4980.094
33VGL32357152.6950.6340.629-0.008

Standard genetic assessment for 7 STRs in the DLA region

Saint Bernard

#LocusNNaNeHoHeF
1DLA I-3CCA7173.8880.7890.743-0.062
2DLA I-4ACA7163.6480.7460.726-0.028
3DLA I-4BCT7153.1000.7040.677-0.040
4DLA11317173.3440.7610.701-0.085
55ACA7152.9960.6480.6660.028
65ACT7152.9380.7040.660-0.068
75BCA7163.0460.7320.672-0.090