Statistics and Breed-wide Allele Frequency - Samoyed

Updated Dec 3, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Samoyed (n=194)
1006	387 375 293 180	0.005
1009	382 377 277 184	0.126
1011	376 365 281 180	0.273
1012	388 369 289 188	0.013
1014	375 373 287 178	0.003
1061	380 365 281 183	0.003
1068	380 373 287 181	0.041
1085	376 373 277 186	0.003
1152	390 373 281 180	0.495
1153	389 373 287 183	0.018
1157	386 373 281 180	0.003
1158	390 371 281 180	0.003
1160	386 369 289 176	0.015

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Samoyed (n=194)
2002	343 327 280	0.003
2003	343 324 282	0.013
2007	351 327 280	0.005
2015	339 327 280	0.015
2022	339 327 282	0.111
2024	343 323 280	0.015
2042	341 324 286	0.003
2050	341 327 284	0.003
2053	343 324 280	0.557
2095	355 322 280	0.162
2096	351 322 280	0.111
2099	345 324 276	0.003

Allele Frequencies

#	Locus Name	Allele	Samoyed (n=197)
1	AHT121	94	0.282
		96	0.023
		100	0.117
		102	0.322
		106	0.041
		108	0.117
		112	0.033
		114	0.003
		116	0.063
2	AHT137	131	0.053
		133	0.185
		145	0.015
		147	0.234
		151	0.259
		153	0.251
		155	0.003
3	AHTH130	119	0.195
		121	0.670
		127	0.013
		129	0.122
4	AHTh171-A	219	0.431
		225	0.063
		227	0.129
		229	0.218
		235	0.157
5	AHTh260	236	0.170
		238	0.005
		242	0.211
		246	0.363
		249	0.005
		250	0.114
		252	0.132
6	AHTk211	89	0.340
		91	0.604
		93	0.056
7	AHTk253	284	0.030
		286	0.117
		288	0.145
		290	0.345
		292	0.360
		294	0.003
8	C22.279	116	0.297
		118	0.122
		120	0.074
		122	0.051
		124	0.388
		126	0.005
		134	0.063
9	FH2001	16	0.003
		132	0.018
		136	0.099
		140	0.025
		144	0.510
		148	0.008
		152	0.086
		156	0.251
10	FH2054	148	0.010
		152	0.003
		156	0.005
		160	0.005
		168	0.627
		172	0.150
		176	0.175
		180	0.025
11	FH2848	232	0.003
		234	0.274
		236	0.216
		237	0.003
		238	0.391
		239	0.003
		240	0.071
		244	0.041
12	INRA21	95	0.942
		97	0.043
		101	0.015
13	INU005	110	0.157
		122	0.434
		124	0.330
		126	0.025
		132	0.053
14	INU030	144	0.183
		146	0.008
		148	0.551
		150	0.259
15	INU055	210	0.005
		212	0.005
		214	0.129
		216	0.178
		218	0.683
16	LEI004	85	0.251
		95	0.746
		107	0.003
17	REN105L03	227	0.102
		229	0.175
		231	0.094
		233	0.028
		234	0.003
		235	0.003
		236	0.003
		239	0.056
		241	0.523
		245	0.015
18	REN162C04	200	0.030
		202	0.180
		204	0.596
		206	0.129
		210	0.063
19	REN169D01	202	0.442
		208	0.038
		212	0.112
		216	0.137
		220	0.056
		222	0.008
		224	0.203
		226	0.005
20	REN169O18	162	0.099
		164	0.216
		166	0.556
		168	0.117
		170	0.013
21	REN247M23	266	0.091
		268	0.360
		270	0.223
		272	0.299
		274	0.005
		276	0.003
		278	0.018
22	REN54P11	226	0.129
		232	0.579
		234	0.269
		236	0.020
		238	0.003
23	REN64E19	139	0.452
		143	0.330
		145	0.109
		147	0.109
24	VGL0760	12	0.124
		13	0.180
		14	0.096
		18.2	0.231
		19.2	0.020
		20.2	0.069
		21.2	0.223
		22.2	0.053
		26.2	0.003
25	VGL0910	17.1	0.236
		18.1	0.069
		19.1	0.020
		20.1	0.056
		21.1	0.322
		22.1	0.178
		23.1	0.056
		24.1	0.063
26	VGL1063	9	0.005
		11	0.005
		12	0.594
		13	0.013
		14	0.066
		17	0.289
		18	0.028
27	VGL1165	14	0.178
		15	0.132
		17	0.003
		19.3	0.142
		20	0.003
		23	0.003
		24	0.216
		26	0.322
		31	0.003
28	VGL1828	14	0.008
		18	0.005
		19	0.799
		20	0.173
		21	0.005
		22	0.008
		23	0.003
29	VGL2009	9	0.190
		11	0.178
		12	0.013
		13	0.201
		14	0.393
		15	0.025
30	VGL2409	13	0.036
		14	0.135
		15	0.259
		16	0.119
		17	0.231
		18	0.218
		21	0.003
31	VGL2918	9	0.003
		12	0.010
		13	0.109
		14	0.589
		15	0.246
		16	0.043
32	VGL3008	10	0.003
		13	0.264
		14	0.183
		15	0.086
		16	0.056
		17	0.208
		18	0.051
		19	0.003
		20	0.008
		21	0.028
		22	0.102
		23	0.010
33	VGL3235	12	0.310
		13	0.350
		14	0.272
		15	0.028
		16	0.033
		17	0.008

Standard genetic assessment based on 33 autosomal STR loci

Samoyed

		N	Na	Ne	Ho	He	F
	Mean	197	6.455	3.255	0.615	0.642	0.042
	SE		0.364	0.208	0.026	0.027	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Samoyed

		N	Na	Ne	Ho	He	F
	Mean	197	6.143	2.102	0.476	0.487	0.020
	SE		0.620	0.209	0.053	0.055	0.009

Standard genetic assessment for individual STR loci

Samoyed

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	197	9	4.591	0.751	0.782	0.040
2	AHT137	197	7	4.503	0.777	0.778	0.002
3	AHTH130	197	4	1.991	0.477	0.498	0.042
4	AHTh171-A	197	5	3.580	0.731	0.721	-0.014
5	AHTh260	197	7	4.246	0.706	0.764	0.077
6	AHTk211	197	3	2.067	0.528	0.516	-0.022
7	AHTk253	197	6	3.515	0.655	0.715	0.085
8	C22.279	197	7	3.761	0.690	0.734	0.060
9	FH2001	197	8	2.927	0.599	0.658	0.090
10	FH2054	197	8	2.238	0.518	0.553	0.064
11	FH2848	197	8	3.557	0.624	0.719	0.131
12	INRA21	197	3	1.125	0.107	0.111	0.042
13	INU005	197	5	3.072	0.614	0.675	0.089
14	INU030	197	4	2.476	0.655	0.596	-0.098
15	INU055	197	5	1.944	0.503	0.485	-0.035
16	LEI004	197	3	1.613	0.386	0.380	-0.015
17	REN105L03	197	10	3.055	0.701	0.673	-0.041
18	REN162C04	197	5	2.439	0.533	0.590	0.097
19	REN169D01	197	8	3.674	0.711	0.728	0.024
20	REN169O18	197	5	2.638	0.569	0.621	0.084
21	REN247M23	197	7	3.595	0.680	0.722	0.058
22	REN54P11	197	5	2.356	0.508	0.576	0.118
23	REN64E19	197	4	2.969	0.680	0.663	-0.026
24	VGL0760	197	9	5.937	0.787	0.832	0.054
25	VGL0910	197	8	4.841	0.766	0.793	0.034
26	VGL1063	197	7	2.264	0.553	0.558	0.009
27	VGL1165	197	9	4.553	0.650	0.780	0.167
28	VGL1828	197	7	1.494	0.279	0.331	0.156
29	VGL2009	197	6	3.794	0.701	0.736	0.049
30	VGL2409	197	7	4.960	0.797	0.798	0.002
31	VGL2918	197	6	2.374	0.599	0.579	-0.035
32	VGL3008	197	12	5.855	0.777	0.829	0.063
33	VGL3235	197	6	3.399	0.685	0.706	0.029

Standard genetic assessment for 7 STRs in the DLA region

Samoyed

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	197	9	2.935	0.643	0.659	0.025
2	DLA I-4ACA	197	6	2.448	0.577	0.591	0.024
3	DLA I-4BCT	197	5	1.616	0.388	0.381	-0.018
4	DLA1131	197	8	1.609	0.381	0.378	-0.006
5	5ACA	197	6	2.470	0.582	0.595	0.023
6	5ACT	197	4	2.342	0.541	0.573	0.056
7	5BCA	197	5	1.297	0.221	0.229	0.038

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Samoyed

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Samoyed

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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