Statistics and Breed-wide Allele Frequency - Samoyed

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesSamoyed (n=191)
1006387 375 293 1800.005
1009382 377 277 1840.123
1011376 365 281 1800.272
1012388 369 289 1880.013
1014375 373 287 1780.003
1061380 365 281 1830.003
1068380 373 287 1810.042
1085376 373 277 1860.003
1152390 373 281 1800.497
1153389 373 287 1830.018
1157386 373 281 1800.003
1158390 371 281 1800.003
1160386 369 289 1760.016

DLA Class II Haplotype Frequencies

DLA2 #STR typesSamoyed (n=191)
2002343 327 2800.003
2003343 324 2820.013
2007351 327 2800.005
2015339 327 2800.016
2022339 327 2820.107
2024343 323 2800.016
2042341 324 2860.003
2050341 327 2840.003
2053343 324 2800.560
2095355 322 2800.160
2096351 322 2800.113
2099345 324 2760.003

Allele Frequencies

#Locus NameAlleleSamoyed (n=194)
1AHT121 940.278
960.023
1000.119
1020.325
1060.039
1080.119
1120.034
1140.003
1160.062
2AHT137 1310.054
1330.183
1450.013
1470.237
1510.258
1530.253
1550.003
3AHTH130 1190.196
1210.670
1270.013
1290.121
4AHTh171-A 2190.430
2250.064
2270.131
2290.216
2350.157
5AHTh260 2360.173
2380.005
2420.214
2460.356
2490.005
2500.113
2520.134
6AHTk211 890.340
910.603
930.057
7AHTk253 2840.031
2860.119
2880.144
2900.345
2920.358
2940.003
8C22.279 1160.294
1180.121
1200.075
1220.052
1240.394
1260.005
1340.059
9FH2001 160.003
1320.018
1360.101
1400.026
1440.513
1480.003
1520.088
1560.250
10FH2054 1480.010
1520.003
1560.005
1600.005
1680.626
1720.152
1760.175
1800.023
11FH2848 2320.003
2340.276
2360.219
2370.003
2380.387
2390.003
2400.072
2440.039
12INRA21 950.941
970.044
1010.015
13INU005 1100.160
1220.428
1240.332
1260.026
1320.054
14INU030 1440.183
1460.008
1480.554
1500.255
15INU055 2100.005
2120.005
2140.129
2160.178
2180.683
16LEI004 850.253
950.745
1070.003
17REN105L03 2270.101
2290.170
2310.095
2330.028
2340.003
2350.003
2360.003
2390.057
2410.526
2450.015
18REN162C04 2000.031
2020.183
2040.590
2060.131
2100.064
19REN169D01 2020.441
2080.036
2120.113
2160.137
2200.057
2220.008
2240.204
2260.005
20REN169O18 1620.101
1640.209
1660.562
1680.116
1700.013
21REN247M23 2660.093
2680.358
2700.227
2720.299
2740.005
2760.003
2780.015
22REN54P11 2260.129
2320.575
2340.273
2360.021
2380.003
23REN64E19 1390.451
1430.332
1450.111
1470.106
24VGL0760 120.121
130.175
140.098
18.20.232
19.20.021
20.20.070
21.20.227
22.20.054
26.20.003
25VGL0910 17.10.235
18.10.070
19.10.021
20.10.057
21.10.322
22.10.178
23.10.057
24.10.062
26VGL1063 90.005
110.005
120.590
130.013
140.067
170.291
180.028
27VGL1165 140.178
150.131
170.003
19.30.144
200.003
230.003
240.219
260.317
310.003
28VGL1828 140.008
180.005
190.802
200.173
210.003
220.008
230.003
29VGL2009 90.188
110.180
120.013
130.204
140.389
150.026
30VGL2409 130.036
140.131
150.260
160.119
170.235
180.216
210.003
31VGL2918 90.003
120.010
130.111
140.585
150.247
160.044
32VGL3008 100.003
130.265
140.180
150.085
160.057
170.211
180.046
190.003
200.008
210.028
220.103
230.010
33VGL3235 120.307
130.353
140.271
150.028
160.034
170.008

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
SamoyedMean1946.4553.2570.6160.6430.041
 SE 0.3640.2080.0260.0270.010

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
SamoyedMean1946.1432.0900.4700.4840.027
 SE 0.6200.2070.0530.0550.009

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12119494.5860.7470.7820.044
2AHT13719474.4840.7730.7770.005
3AHTH13019441.9910.4790.4980.037
4AHTh171-A19453.5940.7270.722-0.007
5AHTh26019474.2930.7110.7670.073
6AHTk21119432.0720.5260.517-0.016
7AHTk25319463.5280.6550.7170.086
8C22.27919473.7270.6860.7320.063
9FH200119482.9040.6080.6560.072
10FH205419482.2380.5150.5530.068
11FH284819483.5690.6240.7200.133
12INRA2119431.1270.1080.1130.041
13INU00519453.0990.6190.6770.087
14INU03019442.4650.6490.594-0.093
15INU05519451.9430.5000.485-0.030
16LEI00419431.6170.3870.381-0.014
17REN105L03194103.0410.7010.671-0.045
18REN162C0419452.4740.5410.5960.092
19REN169D0119483.6790.7110.7280.023
20REN169O1819452.6110.5670.6170.081
21REN247M2319473.5970.6860.7220.050
22REN54P1119452.3700.5100.5780.117
23REN64E1919442.9640.6750.663-0.019
24VGL076019495.9370.7940.8320.045
25VGL091019484.8560.7730.7940.026
26VGL106319472.2800.5570.5610.008
27VGL116519494.5820.6490.7820.169
28VGL182819471.4870.2730.3280.166
29VGL200919463.8210.7110.7380.037
30VGL240919474.9440.8040.798-0.008
31VGL291819462.3930.6030.582-0.036
32VGL3008194125.8170.7780.8280.060
33VGL323519463.4020.6910.7060.022

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA19492.9230.6370.6580.031
2DLA I-4ACA19462.4310.5710.5890.031
3DLA I-4BCT19451.6110.3830.379-0.011
4DLA113119481.6040.3760.3770.001
55ACA19462.4480.5750.5920.028
65ACT19442.3250.5340.5700.064
75BCA19451.2900.2140.2250.049