Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesScottish Collie (n=83)
1006387 375 293 1800.036
1008386 373 289 1820.006
1012388 369 289 1880.006
1014375 373 287 1780.006
1016382 371 277 1780.084
1045376 371 277 1860.741
1087380 371 277 1780.018
1160386 369 289 1760.006
1222386 379 277 1810.024
1223380 371 289 1810.066
1224385 371 277 1820.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesScottish Collie (n=83)
2002343 327 2800.006
2003343 324 2820.012
2007351 327 2800.006
2031339 322 2820.018
2037341 327 2800.006
2039345 327 2760.735
2065339 325 2860.012
2080339 325 2760.012
2081343 322 2820.006
2091343 327 2880.066
2119343 324 2860.066
2120343 327 2860.018
2121351 327 2820.030
2126343 327 2820.006

Allele Frequencies

#Locus NameAlleleScottish Collie (n=83)
1AHT121 940.127
980.078
1000.355
1020.084
1040.313
1060.018
1080.012
1100.012
2AHT137 1310.030
1330.006
1370.476
1390.054
1450.012
1470.157
1510.265
3AHTH130 1190.006
1210.024
1230.651
1250.006
1270.217
1290.030
1310.066
4AHTh171-A 2190.157
2210.361
2230.181
2250.024
2330.253
2350.018
2370.006
5AHTh260 2380.072
2420.006
2460.614
2480.036
2500.187
2520.084
6AHTk211 890.723
910.012
950.205
970.060
7AHTk253 2840.012
2860.006
2880.627
2920.355
8C22.279 1160.187
1180.060
1200.012
1240.554
1260.175
1280.006
1300.006
9FH2001 1280.006
1320.235
1360.169
1400.072
1440.410
1480.102
1520.006
10FH2054 1480.018
1520.018
1560.084
1600.018
1680.114
1720.096
1760.566
1800.084
11FH2848 2300.006
2320.114
2340.271
2360.108
2380.428
2400.024
2420.030
2440.012
2460.006
12INRA21 910.078
950.151
970.422
990.024
1010.319
1050.006
13INU005 1100.006
1220.012
1240.542
1260.440
14INU030 1440.036
1460.373
1500.018
1520.548
1540.024
15INU055 2100.807
2120.030
2140.012
2180.151
16LEI004 850.006
950.880
970.006
1010.006
1070.102
17REN105L03 2270.307
2310.006
2330.301
2350.169
2370.024
2390.006
2410.187
18REN162C04 2000.066
2020.175
2040.283
2060.331
2080.145
19REN169D01 2020.042
2120.759
2160.145
2180.006
2200.048
20REN169O18 1600.012
1620.693
1640.030
1660.036
1680.187
1700.042
21REN247M23 2660.361
2680.596
2700.006
2720.012
2780.024
22REN54P11 2220.518
2260.464
2320.018
23REN64E19 1390.006
1430.018
1450.313
1470.572
1510.054
1530.036
24VGL0760 120.006
130.163
140.386
18.20.012
19.20.114
20.20.139
21.20.030
22.20.096
23.20.054
25VGL0910 16.10.078
17.10.277
18.10.066
19.10.108
20.10.042
21.10.331
22.10.060
23.10.036
26VGL1063 80.048
90.018
120.151
130.066
140.108
150.066
160.024
170.090
180.018
190.120
200.241
210.036
220.012
27VGL1165 180.006
190.036
200.042
210.307
220.006
230.012
240.018
250.012
260.518
270.036
280.006
28VGL1828 150.006
160.663
170.205
190.006
200.078
210.042
29VGL2009 90.157
100.271
110.024
130.241
140.096
150.066
160.139
170.006
30VGL2409 150.054
160.018
170.024
180.861
190.042
31VGL2918 110.006
120.235
130.584
140.114
150.012
18.30.048
32VGL3008 100.012
130.018
140.006
150.536
160.078
170.205
180.030
190.036
210.036
220.030
230.012
33VGL3235 120.006
140.289
150.018
160.663
170.006
180.006
190.012

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Scottish CollieMean836.6362.9030.5970.592-0.011
 SE 0.3800.2320.0270.0270.014

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Scottish CollieMean835.4291.5390.3430.333-0.014
 SE 0.5290.0920.0490.0420.029

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1218383.9320.7830.746-0.050
2AHT1378373.0740.6870.675-0.018
3AHTH1308372.1000.5420.524-0.035
4AHTh171-A8373.9560.7230.7470.033
5AHTh2608362.3470.6020.574-0.050
6AHTk2118341.7600.4700.432-0.088
7AHTk2538341.9270.5420.481-0.127
8C22.2798372.6570.6020.6240.034
9FH20018373.7420.7110.7330.030
10FH20548382.7910.5660.6420.118
11FH28488393.5340.8190.717-0.143
12INRA218363.2340.6390.6910.076
13INU0058342.0510.5180.512-0.011
14INU0308352.2610.5300.5580.050
15INU0558341.4810.2530.3250.221
16LEI0048351.2750.2170.216-0.005
17REN105L038374.0150.7590.751-0.011
18REN162C048354.0690.7710.754-0.022
19REN169D018351.6630.4100.399-0.027
20REN169O188361.9270.4460.4810.073
21REN247M238352.0530.5060.5130.013
22REN54P118332.0670.5900.516-0.144
23REN64E198362.3240.5540.5700.027
24VGL07608394.5310.8070.779-0.036
25VGL09108384.6390.7230.7840.078
26VGL106383137.7540.8430.8710.032
27VGL116583112.7180.6390.632-0.010
28VGL18288362.0450.5660.511-0.108
29VGL20098385.2750.7830.8100.034
30VGL24098351.3370.2650.252-0.051
31VGL29188362.4260.6510.588-0.107
32VGL300883112.9360.6510.6590.013
33VGL32358371.9110.5420.477-0.137

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA8381.7670.4580.434-0.055
2DLA I-4ACA8351.1900.1690.159-0.058
3DLA I-4BCT8341.2960.2050.2290.104
4DLA11318371.7530.4580.430-0.066
55ACA8351.7360.4580.424-0.080
65ACT8341.2980.2050.2300.108
75BCA8351.7320.4460.423-0.054