Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Sep 2, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Scottish Collie (n=129)
1006	387 375 293 180	0.035
1008	386 373 289 182	0.008
1012	388 369 289 188	0.008
1014	375 373 287 178	0.004
1016	382 371 277 178	0.085
1045	376 371 277 186	0.736
1068	380 373 287 181	0.004
1087	380 371 277 178	0.016
1094	395 375 277 176	0.008
1160	386 369 289 176	0.008
1191	388 373 260 186	0.004
1222	386 379 277 181	0.027
1223	380 371 289 181	0.054
1224	385 371 277 182	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Scottish Collie (n=129)
2001	343 324 284	0.004
2002	343 327 280	0.004
2003	343 324 282	0.016
2007	351 327 280	0.004
2012	345 322 280	0.008
2018	339 324 284	0.004
2031	339 322 282	0.016
2037	341 327 280	0.004
2039	345 327 276	0.725
2065	339 325 286	0.016
2080	339 325 276	0.012
2081	343 322 282	0.004
2089	343 331 276	0.008
2091	343 327 288	0.050
2097	343 327 276	0.004
2119	343 324 286	0.054
2120	343 327 286	0.031
2121	351 327 282	0.031
2126	343 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Scottish Collie (n=130)
1	AHT121	94	0.135
		98	0.077
		100	0.342
		102	0.077
		104	0.312
		106	0.027
		108	0.012
		110	0.019
2	AHT137	131	0.042
		133	0.023
		137	0.450
		139	0.054
		145	0.019
		147	0.165
		151	0.246
3	AHTH130	113	0.004
		119	0.004
		121	0.042
		123	0.623
		125	0.008
		127	0.223
		129	0.035
		131	0.050
		133	0.008
		135	0.004
4	AHTh171-A	219	0.135
		221	0.331
		223	0.196
		225	0.027
		233	0.285
		235	0.023
		237	0.004
5	AHTh260	238	0.077
		240	0.012
		242	0.004
		246	0.573
		248	0.031
		250	0.208
		252	0.096
6	AHTk211	87	0.012
		89	0.665
		91	0.015
		95	0.231
		97	0.077
7	AHTk253	284	0.015
		286	0.012
		288	0.588
		290	0.004
		292	0.381
8	C22.279	116	0.185
		118	0.058
		120	0.012
		124	0.538
		126	0.181
		128	0.012
		130	0.015
9	FH2001	124	0.004
		128	0.004
		132	0.269
		136	0.158
		140	0.062
		144	0.373
		148	0.123
		152	0.008
10	FH2054	148	0.012
		152	0.023
		156	0.069
		160	0.019
		168	0.112
		172	0.100
		176	0.581
		180	0.085
11	FH2848	230	0.012
		232	0.104
		234	0.285
		236	0.108
		238	0.381
		240	0.035
		242	0.042
		244	0.031
		246	0.004
12	INRA21	91	0.065
		95	0.154
		97	0.465
		99	0.038
		101	0.273
		105	0.004
13	INU005	110	0.004
		122	0.012
		124	0.527
		126	0.454
		130	0.004
14	INU030	144	0.073
		146	0.319
		150	0.035
		152	0.550
		154	0.023
15	INU055	208	0.004
		210	0.785
		212	0.042
		214	0.019
		218	0.150
16	LEI004	85	0.015
		95	0.881
		97	0.008
		101	0.004
		107	0.092
17	REN105L03	227	0.292
		231	0.012
		233	0.285
		235	0.150
		237	0.038
		239	0.012
		241	0.212
18	REN162C04	200	0.065
		202	0.212
		204	0.285
		206	0.296
		208	0.142
19	REN169D01	202	0.058
		210	0.008
		212	0.696
		216	0.169
		218	0.019
		220	0.050
20	REN169O18	160	0.008
		162	0.646
		164	0.035
		166	0.046
		168	0.223
		170	0.042
21	REN247M23	266	0.362
		268	0.592
		270	0.012
		272	0.015
		278	0.019
22	REN54P11	222	0.538
		226	0.400
		230	0.004
		232	0.027
		234	0.015
		236	0.008
		240	0.004
		242	0.004
23	REN64E19	139	0.019
		143	0.027
		145	0.319
		147	0.550
		151	0.054
		153	0.031
24	VGL0760	12	0.004
		13	0.162
		14	0.404
		18.2	0.019
		19.2	0.088
		20.2	0.142
		21.2	0.038
		22.2	0.069
		23.2	0.073
25	VGL0910	14	0.004
		16.1	0.077
		17.1	0.269
		18.1	0.104
		19.1	0.127
		20.1	0.038
		21.1	0.265
		22.1	0.069
		23.1	0.046
26	VGL1063	8	0.065
		9	0.023
		12	0.138
		13	0.073
		14	0.104
		15	0.077
		16	0.023
		17	0.081
		18	0.031
		19	0.096
		20	0.242
		21	0.035
		22	0.012
27	VGL1165	18	0.008
		19	0.027
		20	0.038
		21	0.281
		22	0.008
		23	0.008
		24	0.019
		25	0.019
		26	0.523
		27	0.046
		28	0.019
		31	0.004
28	VGL1828	15	0.004
		16	0.627
		17	0.223
		19	0.004
		20	0.073
		21	0.069
29	VGL2009	9	0.123
		10	0.277
		11	0.015
		13	0.281
		14	0.104
		15	0.073
		16	0.119
		17	0.008
30	VGL2409	13	0.008
		14	0.004
		15	0.035
		16	0.019
		17	0.035
		18	0.858
		19	0.042
31	VGL2918	11	0.012
		12	0.254
		13	0.542
		14	0.115
		15	0.023
		18.3	0.046
		20.3	0.008
32	VGL3008	10	0.012
		12	0.004
		13	0.015
		14	0.008
		15	0.504
		16	0.077
		17	0.215
		18	0.023
		19	0.046
		21	0.042
		22	0.042
		23	0.012
33	VGL3235	11	0.004
		12	0.008
		14	0.281
		15	0.023
		16	0.669
		17	0.004
		18	0.004
		19	0.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	130	7.303	3.040	0.617	0.612	-0.010
	SE		0.367	0.239	0.026	0.026	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	130	6.000	1.569	0.355	0.347	-0.016
	SE		0.535	0.091	0.044	0.040	0.022

Standard genetic assessment for individual STR loci

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	130	8	4.075	0.792	0.755	-0.050
2	AHT137	130	7	3.378	0.738	0.704	-0.049
3	AHTH130	130	10	2.254	0.554	0.556	0.005
4	AHTh171-A	130	7	4.028	0.723	0.752	0.038
5	AHTh260	130	7	2.579	0.631	0.612	-0.030
6	AHTk211	130	5	1.991	0.546	0.498	-0.097
7	AHTk253	130	5	2.034	0.562	0.508	-0.105
8	C22.279	130	7	2.774	0.623	0.639	0.026
9	FH2001	130	8	3.913	0.746	0.744	-0.002
10	FH2054	130	8	2.683	0.577	0.627	0.080
11	FH2848	130	9	3.961	0.823	0.748	-0.101
12	INRA21	130	6	3.119	0.662	0.679	0.026
13	INU005	130	5	2.067	0.523	0.516	-0.013
14	INU030	130	5	2.430	0.562	0.589	0.046
15	INU055	130	5	1.562	0.315	0.360	0.123
16	LEI004	130	5	1.275	0.215	0.215	0.000
17	REN105L03	130	7	4.247	0.746	0.765	0.024
18	REN162C04	130	5	4.202	0.792	0.762	-0.040
19	REN169D01	130	6	1.925	0.485	0.480	-0.009
20	REN169O18	130	6	2.117	0.531	0.528	-0.006
21	REN247M23	130	5	2.073	0.554	0.518	-0.070
22	REN54P11	130	8	2.217	0.592	0.549	-0.079
23	REN64E19	130	6	2.443	0.538	0.591	0.088
24	VGL0760	130	9	4.362	0.815	0.771	-0.058
25	VGL0910	130	9	5.431	0.769	0.816	0.057
26	VGL1063	130	13	8.109	0.815	0.877	0.070
27	VGL1165	130	12	2.793	0.646	0.642	-0.007
28	VGL1828	130	6	2.208	0.562	0.547	-0.027
29	VGL2009	130	8	4.968	0.762	0.799	0.047
30	VGL2409	130	7	1.351	0.254	0.260	0.023
31	VGL2918	130	7	2.669	0.654	0.625	-0.046
32	VGL3008	130	12	3.195	0.700	0.687	-0.019
33	VGL3235	130	8	1.896	0.554	0.473	-0.172

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	130	9	1.816	0.469	0.449	-0.044
2	DLA I-4ACA	130	5	1.251	0.215	0.200	-0.075
3	DLA I-4BCT	130	5	1.288	0.215	0.224	0.038
4	DLA1131	130	7	1.783	0.462	0.439	-0.051
5	5ACA	130	5	1.766	0.462	0.434	-0.064
6	5ACT	130	5	1.345	0.231	0.257	0.101
7	5BCA	130	6	1.737	0.431	0.424	-0.015

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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