Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Aug 3, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Scottish Collie (n=129)
1006	387 375 293 180	0.031
1008	386 373 289 182	0.008
1012	388 369 289 188	0.008
1014	375 373 287 178	0.004
1016	382 371 277 178	0.089
1045	376 371 277 186	0.733
1068	380 373 287 181	0.004
1087	380 371 277 178	0.016
1094	395 375 277 176	0.008
1160	386 369 289 176	0.008
1191	388 373 260 186	0.004
1222	386 379 277 181	0.031
1223	380 371 289 181	0.054
1224	385 371 277 182	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Scottish Collie (n=129)
2001	343 324 284	0.004
2002	343 327 280	0.004
2003	343 324 282	0.016
2007	351 327 280	0.004
2012	345 322 280	0.008
2018	339 324 284	0.004
2031	339 322 282	0.016
2037	341 327 280	0.004
2039	345 327 276	0.721
2065	339 325 286	0.016
2080	339 325 276	0.016
2081	343 322 282	0.004
2089	343 331 276	0.008
2091	343 327 288	0.050
2097	343 327 276	0.004
2119	343 324 286	0.054
2120	343 327 286	0.035
2121	351 327 282	0.027
2126	343 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Scottish Collie (n=129)
1	AHT121	94	0.136
		98	0.074
		100	0.341
		102	0.078
		104	0.314
		106	0.027
		108	0.012
		110	0.019
2	AHT137	131	0.043
		133	0.023
		137	0.450
		139	0.050
		145	0.019
		147	0.167
		151	0.248
3	AHTH130	113	0.004
		119	0.004
		121	0.043
		123	0.620
		125	0.008
		127	0.225
		129	0.035
		131	0.050
		133	0.008
		135	0.004
4	AHTh171-A	219	0.136
		221	0.329
		223	0.198
		225	0.027
		233	0.283
		235	0.023
		237	0.004
5	AHTh260	238	0.078
		240	0.012
		242	0.004
		246	0.570
		248	0.031
		250	0.209
		252	0.097
6	AHTk211	87	0.012
		89	0.667
		91	0.016
		95	0.229
		97	0.078
7	AHTk253	284	0.016
		286	0.012
		288	0.589
		290	0.004
		292	0.380
8	C22.279	116	0.182
		118	0.058
		120	0.012
		124	0.543
		126	0.178
		128	0.012
		130	0.016
9	FH2001	124	0.004
		128	0.004
		132	0.267
		136	0.159
		140	0.058
		144	0.376
		148	0.124
		152	0.008
10	FH2054	148	0.012
		152	0.023
		156	0.070
		160	0.019
		168	0.112
		172	0.097
		176	0.581
		180	0.085
11	FH2848	230	0.012
		232	0.105
		234	0.283
		236	0.109
		238	0.380
		240	0.035
		242	0.043
		244	0.031
		246	0.004
12	INRA21	91	0.062
		95	0.155
		97	0.465
		99	0.039
		101	0.275
		105	0.004
13	INU005	110	0.004
		122	0.012
		124	0.527
		126	0.453
		130	0.004
14	INU030	144	0.074
		146	0.318
		150	0.035
		152	0.550
		154	0.023
15	INU055	208	0.004
		210	0.783
		212	0.043
		214	0.019
		218	0.151
16	LEI004	85	0.016
		95	0.880
		97	0.008
		101	0.004
		107	0.093
17	REN105L03	227	0.295
		231	0.012
		233	0.283
		235	0.147
		237	0.039
		239	0.012
		241	0.213
18	REN162C04	200	0.066
		202	0.205
		204	0.287
		206	0.298
		208	0.143
19	REN169D01	202	0.058
		210	0.008
		212	0.702
		216	0.163
		218	0.019
		220	0.050
20	REN169O18	160	0.008
		162	0.647
		164	0.031
		166	0.047
		168	0.225
		170	0.043
21	REN247M23	266	0.364
		268	0.589
		270	0.012
		272	0.016
		278	0.019
22	REN54P11	222	0.539
		226	0.399
		230	0.004
		232	0.027
		234	0.016
		236	0.008
		240	0.004
		242	0.004
23	REN64E19	139	0.019
		143	0.027
		145	0.322
		147	0.550
		151	0.050
		153	0.031
24	VGL0760	12	0.004
		13	0.159
		14	0.403
		18.2	0.019
		19.2	0.089
		20.2	0.143
		21.2	0.039
		22.2	0.070
		23.2	0.074
25	VGL0910	14	0.004
		16.1	0.078
		17.1	0.267
		18.1	0.105
		19.1	0.128
		20.1	0.039
		21.1	0.264
		22.1	0.070
		23.1	0.047
26	VGL1063	8	0.066
		9	0.023
		12	0.140
		13	0.070
		14	0.105
		15	0.078
		16	0.023
		17	0.078
		18	0.031
		19	0.097
		20	0.244
		21	0.035
		22	0.012
27	VGL1165	18	0.008
		19	0.027
		20	0.039
		21	0.279
		22	0.008
		23	0.008
		24	0.019
		25	0.019
		26	0.523
		27	0.047
		28	0.019
		31	0.004
28	VGL1828	15	0.004
		16	0.628
		17	0.221
		19	0.004
		20	0.074
		21	0.070
29	VGL2009	9	0.124
		10	0.279
		11	0.016
		13	0.279
		14	0.105
		15	0.074
		16	0.116
		17	0.008
30	VGL2409	13	0.008
		14	0.004
		15	0.035
		16	0.019
		17	0.035
		18	0.857
		19	0.043
31	VGL2918	11	0.012
		12	0.252
		13	0.543
		14	0.116
		15	0.023
		18.3	0.047
		20.3	0.008
32	VGL3008	10	0.012
		12	0.004
		13	0.016
		14	0.008
		15	0.504
		16	0.078
		17	0.213
		18	0.023
		19	0.047
		21	0.043
		22	0.043
		23	0.012
33	VGL3235	11	0.004
		12	0.008
		14	0.283
		15	0.023
		16	0.667
		17	0.004
		18	0.004
		19	0.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	129	7.303	3.040	0.616	0.612	-0.009
	SE		0.367	0.239	0.026	0.026	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	129	6.000	1.563	0.351	0.344	-0.013
	SE		0.535	0.090	0.044	0.040	0.022

Standard genetic assessment for individual STR loci

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	129	8	4.065	0.791	0.754	-0.049
2	AHT137	129	7	3.370	0.736	0.703	-0.047
3	AHTH130	129	10	2.268	0.558	0.559	0.002
4	AHTh171-A	129	7	4.043	0.721	0.753	0.042
5	AHTh260	129	7	2.598	0.636	0.615	-0.034
6	AHTk211	129	5	1.988	0.543	0.497	-0.092
7	AHTk253	129	5	2.033	0.558	0.508	-0.098
8	C22.279	129	7	2.752	0.620	0.637	0.026
9	FH2001	129	8	3.891	0.744	0.743	-0.002
10	FH2054	129	8	2.679	0.574	0.627	0.085
11	FH2848	129	9	3.981	0.822	0.749	-0.097
12	INRA21	129	6	3.111	0.659	0.679	0.029
13	INU005	129	5	2.067	0.519	0.516	-0.006
14	INU030	129	5	2.432	0.558	0.589	0.052
15	INU055	129	5	1.567	0.318	0.362	0.122
16	LEI004	129	5	1.277	0.217	0.217	-0.001
17	REN105L03	129	7	4.242	0.744	0.764	0.026
18	REN162C04	129	5	4.194	0.798	0.762	-0.048
19	REN169D01	129	6	1.905	0.488	0.475	-0.028
20	REN169O18	129	6	2.107	0.527	0.525	-0.003
21	REN247M23	129	5	2.081	0.558	0.519	-0.075
22	REN54P11	129	8	2.219	0.589	0.549	-0.073
23	REN64E19	129	6	2.433	0.535	0.589	0.092
24	VGL0760	129	9	4.377	0.814	0.772	-0.055
25	VGL0910	129	9	5.469	0.767	0.817	0.061
26	VGL1063	129	13	8.061	0.814	0.876	0.071
27	VGL1165	129	12	2.798	0.643	0.643	-0.001
28	VGL1828	129	6	2.206	0.558	0.547	-0.021
29	VGL2009	129	8	4.967	0.760	0.799	0.049
30	VGL2409	129	7	1.354	0.256	0.262	0.022
31	VGL2918	129	7	2.671	0.651	0.626	-0.041
32	VGL3008	129	12	3.202	0.698	0.688	-0.014
33	VGL3235	129	8	1.904	0.558	0.475	-0.176

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	129	9	1.807	0.465	0.447	-0.041
2	DLA I-4ACA	129	5	1.243	0.209	0.195	-0.072
3	DLA I-4BCT	129	5	1.280	0.209	0.219	0.044
4	DLA1131	129	7	1.775	0.457	0.437	-0.048
5	5ACA	129	5	1.757	0.457	0.431	-0.061
6	5ACT	129	5	1.349	0.233	0.258	0.100
7	5BCA	129	6	1.729	0.426	0.422	-0.011

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Connect with us on social media