Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Jun 29, 2022

DLA Class I Haplotype Frequencies

DLA1 #STR typesScottish Collie (n=114)
1006387 375 293 1800.035
1008386 373 289 1820.009
1012388 369 289 1880.009
1014375 373 287 1780.004
1016382 371 277 1780.096
1045376 371 277 1860.719
1087380 371 277 1780.018
1094395 375 277 1760.004
1160386 369 289 1760.009
1222386 379 277 1810.035
1223380 371 289 1810.057
1224385 371 277 1820.004

DLA Class II Haplotype Frequencies

DLA2 #STR typesScottish Collie (n=114)
2002343 327 2800.004
2003343 324 2820.018
2007351 327 2800.004
2012345 322 2800.004
2031339 322 2820.018
2037341 327 2800.004
2039345 327 2760.711
2065339 325 2860.018
2080339 325 2760.018
2081343 322 2820.004
2089343 331 2760.004
2091343 327 2880.057
2097343 327 2760.004
2119343 324 2860.057
2120343 327 2860.035
2121351 327 2820.031
2126343 327 2820.009

Allele Frequencies

#Locus NameAlleleScottish Collie (n=114)
1AHT121 940.132
980.075
1000.355
1020.075
1040.311
1060.022
1080.009
1100.022
2AHT137 1310.035
1330.018
1370.465
1390.053
1450.022
1470.158
1510.250
3AHTH130 1130.004
1190.004
1210.031
1230.618
1250.004
1270.228
1290.039
1310.057
1330.009
1350.004
4AHTh171-A 2190.140
2210.364
2230.193
2250.022
2330.254
2350.022
2370.004
5AHTh260 2380.070
2400.013
2420.004
2460.575
2480.031
2500.211
2520.096
6AHTk211 870.004
890.684
910.018
950.219
970.075
7AHTk253 2840.018
2860.004
2880.601
2900.004
2920.373
8C22.279 1160.189
1180.057
1200.013
1240.526
1260.197
1280.009
1300.009
9FH2001 1280.004
1320.268
1360.158
1400.061
1440.377
1480.127
1520.004
10FH2054 1480.013
1520.026
1560.070
1600.018
1680.123
1720.096
1760.566
1800.088
11FH2848 2300.009
2320.110
2340.268
2360.110
2380.404
2400.031
2420.044
2440.022
2460.004
12INRA21 910.070
950.154
970.461
990.035
1010.276
1050.004
13INU005 1100.004
1220.013
1240.548
1260.430
1300.004
14INU030 1440.061
1460.333
1500.031
1520.548
1540.026
15INU055 2100.785
2120.039
2140.013
2180.162
16LEI004 850.004
950.886
970.009
1010.004
1070.096
17REN105L03 2270.289
2310.009
2330.285
2350.158
2370.031
2390.013
2410.215
18REN162C04 2000.066
2020.193
2040.285
2060.307
2080.149
19REN169D01 2020.057
2120.702
2160.175
2180.013
2200.053
20REN169O18 1600.009
1620.662
1640.031
1660.044
1680.219
1700.035
21REN247M23 2660.360
2680.596
2700.004
2720.018
2780.022
22REN54P11 2220.548
2260.408
2300.004
2320.018
2340.013
2360.004
2400.004
23REN64E19 1390.009
1430.026
1450.311
1470.566
1510.053
1530.035
24VGL0760 120.004
130.167
140.399
18.20.018
19.20.101
20.20.132
21.20.035
22.20.079
23.20.066
25VGL0910 16.10.075
17.10.285
18.10.079
19.10.118
20.10.039
21.10.285
22.10.066
23.10.053
26VGL1063 80.061
90.022
120.154
130.070
140.096
150.079
160.022
170.070
180.022
190.101
200.250
210.039
220.013
27VGL1165 180.009
190.031
200.035
210.303
220.009
230.009
240.022
250.018
260.496
270.053
280.018
28VGL1828 150.004
160.658
170.215
190.004
200.066
210.053
29VGL2009 90.132
100.268
110.018
130.272
140.092
150.083
160.127
170.009
30VGL2409 140.004
150.039
160.022
170.031
180.860
190.044
31VGL2918 110.009
120.250
130.579
140.096
150.013
18.30.053
32VGL3008 100.013
130.013
140.009
150.496
160.083
170.219
180.026
190.048
210.031
220.048
230.013
33VGL3235 120.009
140.285
150.022
160.667
170.004
180.004
190.009

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

  NNaNeHoHeF
Mean1147.0002.9930.6110.606-0.011
 SE 0.3530.2320.0270.0270.012

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

  NNaNeHoHeF
Mean1145.7141.5940.3680.354-0.028
 SE 0.5960.1010.0500.0430.026

Standard genetic assessment for individual STR loci

Scottish Collie

#LocusNNaNeHoHeF
1AHT12111483.9580.7890.747-0.056
2AHT13711473.2430.7280.692-0.053
3AHTH130114102.2710.5610.560-0.003
4AHTh171-A11473.9190.7110.7450.046
5AHTh26011472.5650.6400.610-0.049
6AHTk21111451.9150.5260.478-0.101
7AHTk25311451.9980.5610.500-0.124
8C22.27911472.8160.6320.6450.021
9FH200111473.8640.7190.7410.030
10FH205411482.7910.5880.6420.084
11FH284811493.8180.8330.738-0.129
12INRA2111463.1430.6400.6820.061
13INU00511452.0600.5090.5140.011
14INU03011452.3980.5700.5830.022
15INU05511441.5520.2980.3560.161
16LEI00411451.2590.2110.206-0.024
17REN105L0311474.2130.7630.763-0.001
18REN162C0411454.1780.7980.761-0.049
19REN169D0111451.8890.4740.471-0.007
20REN169O1811462.0370.4910.5090.035
21REN247M2311452.0580.5180.514-0.007
22REN54P1111472.1390.5440.533-0.021
23REN64E1911462.3700.5350.5780.074
24VGL076011494.4110.8160.773-0.055
25VGL091011485.0760.7630.8030.050
26VGL1063114137.7770.8160.8710.064
27VGL1165114112.9110.6750.657-0.029
28VGL182811462.0570.5350.514-0.041
29VGL200911485.1330.7540.8050.063
30VGL240911461.3440.2630.256-0.028
31VGL291811462.4390.6490.590-0.100
32VGL3008114113.2510.7110.692-0.026
33VGL323511471.9000.5530.474-0.167

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#LocusNNaNeHoHeF
1DLA I-3CCA11491.8640.4910.464-0.060
2DLA I-4ACA11451.2440.2110.196-0.073
3DLA I-4BCT11441.2860.2110.2220.053
4DLA113111471.8470.4910.458-0.072
55ACA11451.8100.4910.448-0.097
65ACT11451.3400.2280.2540.100
75BCA11451.7710.4560.435-0.048