Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Jun 13, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesScottish Collie (n=107)
1006387 375 293 1800.037
1008386 373 289 1820.009
1012388 369 289 1880.009
1014375 373 287 1780.005
1016382 371 277 1780.098
1045376 371 277 1860.720
1087380 371 277 1780.014
1094395 375 277 1760.005
1160386 369 289 1760.009
1222386 379 277 1810.037
1223380 371 289 1810.051
1224385 371 277 1820.005

DLA Class II Haplotype Frequencies

DLA2 #STR typesScottish Collie (n=107)
2002343 327 2800.005
2003343 324 2820.019
2007351 327 2800.005
2031339 322 2820.014
2037341 327 2800.005
2039345 327 2760.715
2065339 325 2860.019
2080339 325 2760.019
2081343 322 2820.005
2089343 331 2760.005
2091343 327 2880.061
2097343 327 2760.005
2119343 324 2860.051
2120343 327 2860.033
2121351 327 2820.033
2126343 327 2820.009

Allele Frequencies

#Locus NameAlleleScottish Collie (n=107)
1AHT121 940.136
980.075
1000.369
1020.075
1040.294
1060.023
1080.009
1100.019
2AHT137 1310.037
1330.019
1370.472
1390.051
1450.023
1470.154
1510.243
3AHTH130 1190.005
1210.033
1230.612
1250.005
1270.238
1290.042
1310.056
1330.005
1350.005
4AHTh171-A 2190.136
2210.369
2230.192
2250.023
2330.257
2350.019
2370.005
5AHTh260 2380.075
2400.009
2420.005
2460.584
2480.033
2500.201
2520.093
6AHTk211 870.005
890.682
910.019
950.224
970.070
7AHTk253 2840.019
2860.005
2880.603
2900.005
2920.369
8C22.279 1160.192
1180.056
1200.014
1240.519
1260.201
1280.009
1300.009
9FH2001 1280.005
1320.266
1360.164
1400.061
1440.383
1480.117
1520.005
10FH2054 1480.014
1520.014
1560.075
1600.019
1680.117
1720.098
1760.579
1800.084
11FH2848 2300.009
2320.103
2340.271
2360.112
2380.407
2400.028
2420.047
2440.019
2460.005
12INRA21 910.070
950.150
970.449
990.037
1010.290
1050.005
13INU005 1100.005
1220.014
1240.547
1260.430
1300.005
14INU030 1440.051
1460.346
1500.023
1520.556
1540.023
15INU055 2100.785
2120.037
2140.014
2180.164
16LEI004 850.005
950.883
970.009
1010.005
1070.098
17REN105L03 2270.290
2310.005
2330.280
2350.164
2370.033
2390.014
2410.215
18REN162C04 2000.061
2020.196
2040.271
2060.318
2080.154
19REN169D01 2020.061
2120.710
2160.168
2180.014
2200.047
20REN169O18 1600.009
1620.668
1640.033
1660.042
1680.215
1700.033
21REN247M23 2660.360
2680.593
2700.005
2720.019
2780.023
22REN54P11 2220.533
2260.421
2300.005
2320.019
2340.014
2360.005
2400.005
23REN64E19 1390.009
1430.028
1450.304
1470.579
1510.047
1530.033
24VGL0760 120.005
130.168
140.407
18.20.019
19.20.093
20.20.126
21.20.037
22.20.079
23.20.065
25VGL0910 16.10.075
17.10.276
18.10.084
19.10.117
20.10.037
21.10.299
22.10.065
23.10.047
26VGL1063 80.065
90.019
120.159
130.075
140.103
150.075
160.019
170.075
180.023
190.098
200.243
210.033
220.014
27VGL1165 180.005
190.028
200.037
210.285
220.009
230.009
240.019
250.019
260.514
270.056
280.019
28VGL1828 150.005
160.650
170.215
190.005
200.070
210.056
29VGL2009 90.131
100.271
110.019
130.262
140.093
150.089
160.126
170.009
30VGL2409 140.005
150.042
160.019
170.028
180.860
190.047
31VGL2918 110.009
120.257
130.565
140.098
150.014
18.30.056
32VGL3008 100.014
130.014
140.009
150.505
160.079
170.224
180.028
190.037
210.033
220.047
230.009
33VGL3235 120.009
140.294
150.019
160.659
170.005
180.005
190.009

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

  NNaNeHoHeF
Mean1076.9702.9790.6140.605-0.017
 SE 0.3470.2320.0270.0270.012

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

  NNaNeHoHeF
Mean1075.7141.5900.3660.352-0.028
 SE 0.5960.1000.0490.0430.022

Standard genetic assessment for individual STR loci

Scottish Collie

#LocusNNaNeHoHeF
1AHT12110783.9450.7940.747-0.064
2AHT13710773.2210.7100.689-0.030
3AHTH13010792.2850.5610.5620.003
4AHTh171-A10773.8710.7010.7420.055
5AHTh26010772.5180.6260.603-0.039
6AHTk21110751.9190.5230.479-0.093
7AHTk25310752.0000.5610.500-0.122
8C22.27910772.8600.6360.6500.023
9FH200110773.8180.7100.7380.038
10FH205410782.6850.5700.6280.092
11FH284810793.7690.8220.735-0.119
12INRA2110763.1860.6640.6860.033
13INU00510752.0660.5420.516-0.050
14INU03010752.3120.5510.5670.028
15INU05510741.5510.3080.3550.132
16LEI00410751.2660.2150.210-0.022
17REN105L0310774.2230.7760.763-0.016
18REN162C0410754.1590.8130.760-0.070
19REN169D0110751.8560.4770.461-0.034
20REN169O1810762.0130.4770.5030.053
21REN247M2310752.0720.5420.517-0.048
22REN54P1110772.1680.5510.539-0.024
23REN64E1910762.3140.5140.5680.095
24VGL076010794.3370.8130.769-0.057
25VGL091010785.0090.7760.8000.031
26VGL1063107137.8100.8410.8720.035
27VGL1165107112.8410.6730.648-0.038
28VGL182810762.1000.5610.524-0.071
29VGL200910785.2080.7660.8080.052
30VGL240910761.3430.2620.256-0.024
31VGL291810762.5070.6640.601-0.104
32VGL3008107113.1510.7100.683-0.040
33VGL323510771.9180.5610.479-0.172

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#LocusNNaNeHoHeF
1DLA I-3CCA10791.8640.4860.464-0.048
2DLA I-4ACA10751.2630.2240.208-0.078
3DLA I-4BCT10741.2830.2060.2200.068
4DLA113110771.8480.4860.459-0.059
55ACA10751.8120.4860.448-0.085
65ACT10751.3120.2240.2380.057
75BCA10751.7460.4490.427-0.050