Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Nov 14, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Scottish Collie (n=127)
1006	387 375 293 180	0.031
1008	386 373 289 182	0.008
1012	388 369 289 188	0.008
1014	375 373 287 178	0.004
1016	382 371 277 178	0.091
1045	376 371 277 186	0.728
1068	380 373 287 181	0.004
1087	380 371 277 178	0.016
1094	395 375 277 176	0.008
1160	386 369 289 176	0.008
1191	388 373 260 186	0.004
1222	386 379 277 181	0.031
1223	380 371 289 181	0.055
1224	385 371 277 182	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Scottish Collie (n=127)
2001	343 324 284	0.004
2002	343 327 280	0.004
2003	343 324 282	0.016
2007	351 327 280	0.004
2012	345 322 280	0.008
2018	339 324 284	0.004
2031	339 322 282	0.016
2037	341 327 280	0.004
2039	345 327 276	0.717
2065	339 325 286	0.016
2080	339 325 276	0.016
2081	343 322 282	0.004
2089	343 331 276	0.008
2091	343 327 288	0.051
2097	343 327 276	0.004
2119	343 324 286	0.055
2120	343 327 286	0.035
2121	351 327 282	0.028
2126	343 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Scottish Collie (n=127)
1	AHT121	94	0.134
		98	0.075
		100	0.346
		102	0.075
		104	0.315
		106	0.024
		108	0.012
		110	0.020
2	AHT137	131	0.043
		133	0.024
		137	0.457
		139	0.047
		145	0.020
		147	0.157
		151	0.252
3	AHTH130	113	0.004
		119	0.004
		121	0.039
		123	0.622
		125	0.008
		127	0.224
		129	0.035
		131	0.051
		133	0.008
		135	0.004
4	AHTh171-A	219	0.138
		221	0.335
		223	0.201
		225	0.028
		233	0.272
		235	0.024
		237	0.004
5	AHTh260	238	0.071
		240	0.012
		242	0.004
		246	0.571
		248	0.031
		250	0.213
		252	0.098
6	AHTk211	87	0.012
		89	0.669
		91	0.016
		95	0.228
		97	0.075
7	AHTk253	284	0.016
		286	0.012
		288	0.591
		290	0.004
		292	0.378
8	C22.279	116	0.181
		118	0.059
		120	0.012
		124	0.543
		126	0.181
		128	0.008
		130	0.016
9	FH2001	124	0.004
		128	0.004
		132	0.268
		136	0.161
		140	0.059
		144	0.370
		148	0.126
		152	0.008
10	FH2054	148	0.012
		152	0.024
		156	0.071
		160	0.020
		168	0.114
		172	0.094
		176	0.579
		180	0.087
11	FH2848	230	0.012
		232	0.106
		234	0.287
		236	0.106
		238	0.374
		240	0.035
		242	0.043
		244	0.031
		246	0.004
12	INRA21	91	0.063
		95	0.154
		97	0.469
		99	0.039
		101	0.272
		105	0.004
13	INU005	110	0.004
		122	0.012
		124	0.528
		126	0.453
		130	0.004
14	INU030	144	0.067
		146	0.323
		150	0.031
		152	0.555
		154	0.024
15	INU055	208	0.004
		210	0.783
		212	0.043
		214	0.016
		218	0.154
16	LEI004	85	0.012
		95	0.882
		97	0.008
		101	0.004
		107	0.094
17	REN105L03	227	0.299
		231	0.012
		233	0.280
		235	0.150
		237	0.035
		239	0.012
		241	0.213
18	REN162C04	200	0.067
		202	0.197
		204	0.291
		206	0.299
		208	0.146
19	REN169D01	202	0.055
		210	0.008
		212	0.701
		216	0.165
		218	0.020
		220	0.051
20	REN169O18	160	0.008
		162	0.650
		164	0.031
		166	0.047
		168	0.220
		170	0.043
21	REN247M23	266	0.366
		268	0.591
		270	0.008
		272	0.016
		278	0.020
22	REN54P11	222	0.543
		226	0.398
		230	0.004
		232	0.024
		234	0.016
		236	0.008
		240	0.004
		242	0.004
23	REN64E19	139	0.020
		143	0.028
		145	0.327
		147	0.543
		151	0.051
		153	0.031
24	VGL0760	12	0.004
		13	0.161
		14	0.406
		18.2	0.016
		19.2	0.091
		20.2	0.146
		21.2	0.039
		22.2	0.071
		23.2	0.067
25	VGL0910	14	0.004
		16.1	0.075
		17.1	0.268
		18.1	0.102
		19.1	0.130
		20.1	0.039
		21.1	0.268
		22.1	0.067
		23.1	0.047
26	VGL1063	8	0.063
		9	0.024
		12	0.142
		13	0.071
		14	0.094
		15	0.079
		16	0.024
		17	0.079
		18	0.031
		19	0.098
		20	0.248
		21	0.035
		22	0.012
27	VGL1165	18	0.008
		19	0.028
		20	0.039
		21	0.280
		22	0.008
		23	0.008
		24	0.020
		25	0.020
		26	0.520
		27	0.047
		28	0.020
		31	0.004
28	VGL1828	15	0.004
		16	0.634
		17	0.217
		19	0.004
		20	0.075
		21	0.067
29	VGL2009	9	0.126
		10	0.276
		11	0.016
		13	0.280
		14	0.102
		15	0.075
		16	0.118
		17	0.008
30	VGL2409	13	0.008
		14	0.004
		15	0.035
		16	0.020
		17	0.035
		18	0.854
		19	0.043
31	VGL2918	11	0.012
		12	0.256
		13	0.547
		14	0.110
		15	0.020
		18.3	0.047
		20.3	0.008
32	VGL3008	10	0.012
		12	0.004
		13	0.016
		14	0.008
		15	0.504
		16	0.079
		17	0.213
		18	0.024
		19	0.047
		21	0.039
		22	0.043
		23	0.012
33	VGL3235	11	0.004
		12	0.008
		14	0.287
		15	0.020
		16	0.665
		17	0.004
		18	0.004
		19	0.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	127	7.303	3.030	0.615	0.611	-0.008
	SE		0.367	0.237	0.026	0.026	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	127	6.000	1.575	0.357	0.348	-0.015
	SE		0.535	0.092	0.045	0.040	0.022

Standard genetic assessment for individual STR loci

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	127	8	4.009	0.787	0.751	-0.049
2	AHT137	127	7	3.312	0.740	0.698	-0.060
3	AHTH130	127	10	2.258	0.551	0.557	0.011
4	AHTh171-A	127	7	4.058	0.732	0.754	0.028
5	AHTh260	127	7	2.584	0.630	0.613	-0.028
6	AHTk211	127	5	1.976	0.543	0.494	-0.100
7	AHTk253	127	5	2.033	0.551	0.508	-0.085
8	C22.279	127	7	2.742	0.614	0.635	0.033
9	FH2001	127	8	3.935	0.748	0.746	-0.003
10	FH2054	127	8	2.699	0.575	0.629	0.087
11	FH2848	127	9	4.010	0.827	0.751	-0.101
12	INRA21	127	6	3.102	0.661	0.678	0.024
13	INU005	127	5	2.068	0.512	0.517	0.009
14	INU030	127	5	2.390	0.551	0.582	0.052
15	INU055	127	5	1.564	0.315	0.360	0.126
16	LEI004	127	5	1.271	0.213	0.213	0.002
17	REN105L03	127	7	4.223	0.748	0.763	0.020
18	REN162C04	127	5	4.187	0.803	0.761	-0.055
19	REN169D01	127	6	1.906	0.488	0.475	-0.027
20	REN169O18	127	6	2.102	0.520	0.524	0.009
21	REN247M23	127	5	2.068	0.551	0.516	-0.067
22	REN54P11	127	8	2.202	0.583	0.546	-0.068
23	REN64E19	127	6	2.459	0.543	0.593	0.084
24	VGL0760	127	9	4.325	0.811	0.769	-0.055
25	VGL0910	127	9	5.418	0.764	0.815	0.063
26	VGL1063	127	13	7.993	0.819	0.875	0.064
27	VGL1165	127	12	2.824	0.646	0.646	0.000
28	VGL1828	127	6	2.180	0.551	0.541	-0.018
29	VGL2009	127	8	4.993	0.764	0.800	0.045
30	VGL2409	127	7	1.361	0.260	0.265	0.020
31	VGL2918	127	7	2.632	0.654	0.620	-0.054
32	VGL3008	127	12	3.203	0.693	0.688	-0.007
33	VGL3235	127	8	1.902	0.559	0.474	-0.179

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	127	9	1.826	0.472	0.452	-0.045
2	DLA I-4ACA	127	5	1.247	0.213	0.198	-0.073
3	DLA I-4BCT	127	5	1.285	0.213	0.222	0.042
4	DLA1131	127	7	1.792	0.465	0.442	-0.051
5	5ACA	127	5	1.773	0.465	0.436	-0.066
6	5ACT	127	5	1.355	0.236	0.262	0.099
7	5BCA	127	6	1.745	0.433	0.427	-0.014

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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