Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Jun 6, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Scottish Collie (n=128)
1006	387 375 293 180	0.031
1008	386 373 289 182	0.008
1012	388 369 289 188	0.008
1014	375 373 287 178	0.004
1016	382 371 277 178	0.090
1045	376 371 277 186	0.730
1068	380 373 287 181	0.004
1087	380 371 277 178	0.016
1094	395 375 277 176	0.008
1160	386 369 289 176	0.008
1191	388 373 260 186	0.004
1222	386 379 277 181	0.031
1223	380 371 289 181	0.055
1224	385 371 277 182	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Scottish Collie (n=128)
2001	343 324 284	0.004
2002	343 327 280	0.004
2003	343 324 282	0.016
2007	351 327 280	0.004
2012	345 322 280	0.008
2018	339 324 284	0.004
2031	339 322 282	0.016
2037	341 327 280	0.004
2039	345 327 276	0.719
2065	339 325 286	0.016
2080	339 325 276	0.016
2081	343 322 282	0.004
2089	343 331 276	0.008
2091	343 327 288	0.051
2097	343 327 276	0.004
2119	343 324 286	0.055
2120	343 327 286	0.035
2121	351 327 282	0.027
2126	343 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Scottish Collie (n=128)
1	AHT121	94	0.137
		98	0.074
		100	0.344
		102	0.078
		104	0.313
		106	0.023
		108	0.012
		110	0.020
2	AHT137	131	0.043
		133	0.023
		137	0.453
		139	0.051
		145	0.020
		147	0.160
		151	0.250
3	AHTH130	113	0.004
		119	0.004
		121	0.043
		123	0.621
		125	0.008
		127	0.223
		129	0.035
		131	0.051
		133	0.008
		135	0.004
4	AHTh171-A	219	0.137
		221	0.332
		223	0.199
		225	0.027
		233	0.277
		235	0.023
		237	0.004
5	AHTh260	238	0.074
		240	0.012
		242	0.004
		246	0.570
		248	0.031
		250	0.211
		252	0.098
6	AHTk211	87	0.012
		89	0.672
		91	0.016
		95	0.227
		97	0.074
7	AHTk253	284	0.016
		286	0.012
		288	0.590
		290	0.004
		292	0.379
8	C22.279	116	0.180
		118	0.059
		120	0.012
		124	0.543
		126	0.180
		128	0.012
		130	0.016
9	FH2001	124	0.004
		128	0.004
		132	0.266
		136	0.160
		140	0.059
		144	0.375
		148	0.125
		152	0.008
10	FH2054	148	0.012
		152	0.023
		156	0.070
		160	0.020
		168	0.113
		172	0.094
		176	0.582
		180	0.086
11	FH2848	230	0.012
		232	0.105
		234	0.285
		236	0.105
		238	0.379
		240	0.035
		242	0.043
		244	0.031
		246	0.004
12	INRA21	91	0.063
		95	0.152
		97	0.465
		99	0.039
		101	0.277
		105	0.004
13	INU005	110	0.004
		122	0.012
		124	0.527
		126	0.453
		130	0.004
14	INU030	144	0.070
		146	0.320
		150	0.035
		152	0.551
		154	0.023
15	INU055	208	0.004
		210	0.785
		212	0.043
		214	0.016
		218	0.152
16	LEI004	85	0.016
		95	0.879
		97	0.008
		101	0.004
		107	0.094
17	REN105L03	227	0.297
		231	0.012
		233	0.277
		235	0.148
		237	0.039
		239	0.012
		241	0.215
18	REN162C04	200	0.066
		202	0.203
		204	0.289
		206	0.297
		208	0.145
19	REN169D01	202	0.059
		210	0.008
		212	0.699
		216	0.164
		218	0.020
		220	0.051
20	REN169O18	160	0.008
		162	0.648
		164	0.031
		166	0.047
		168	0.223
		170	0.043
21	REN247M23	266	0.363
		268	0.590
		270	0.012
		272	0.016
		278	0.020
22	REN54P11	222	0.543
		226	0.398
		230	0.004
		232	0.023
		234	0.016
		236	0.008
		240	0.004
		242	0.004
23	REN64E19	139	0.020
		143	0.027
		145	0.324
		147	0.547
		151	0.051
		153	0.031
24	VGL0760	12	0.004
		13	0.160
		14	0.402
		18.2	0.020
		19.2	0.090
		20.2	0.145
		21.2	0.039
		22.2	0.070
		23.2	0.070
25	VGL0910	14	0.004
		16.1	0.078
		17.1	0.266
		18.1	0.105
		19.1	0.129
		20.1	0.039
		21.1	0.266
		22.1	0.066
		23.1	0.047
26	VGL1063	8	0.063
		9	0.023
		12	0.141
		13	0.070
		14	0.102
		15	0.078
		16	0.023
		17	0.078
		18	0.031
		19	0.098
		20	0.246
		21	0.035
		22	0.012
27	VGL1165	18	0.008
		19	0.027
		20	0.039
		21	0.281
		22	0.008
		23	0.008
		24	0.020
		25	0.020
		26	0.520
		27	0.047
		28	0.020
		31	0.004
28	VGL1828	15	0.004
		16	0.633
		17	0.219
		19	0.004
		20	0.074
		21	0.066
29	VGL2009	9	0.125
		10	0.273
		11	0.016
		13	0.281
		14	0.105
		15	0.074
		16	0.117
		17	0.008
30	VGL2409	13	0.008
		14	0.004
		15	0.035
		16	0.020
		17	0.035
		18	0.855
		19	0.043
31	VGL2918	11	0.012
		12	0.254
		13	0.543
		14	0.117
		15	0.020
		18.3	0.047
		20.3	0.008
32	VGL3008	10	0.012
		12	0.004
		13	0.016
		14	0.008
		15	0.504
		16	0.078
		17	0.211
		18	0.023
		19	0.047
		21	0.043
		22	0.043
		23	0.012
33	VGL3235	11	0.004
		12	0.008
		14	0.285
		15	0.023
		16	0.664
		17	0.004
		18	0.004
		19	0.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	128	7.303	3.038	0.616	0.612	-0.008
	SE		0.367	0.238	0.026	0.026	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	128	6.000	1.569	0.354	0.346	-0.014
	SE		0.535	0.091	0.044	0.040	0.022

Standard genetic assessment for individual STR loci

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	128	8	4.045	0.789	0.753	-0.048
2	AHT137	128	7	3.346	0.742	0.701	-0.058
3	AHTH130	128	10	2.267	0.555	0.559	0.007
4	AHTh171-A	128	7	4.051	0.727	0.753	0.035
5	AHTh260	128	7	2.591	0.633	0.614	-0.031
6	AHTk211	128	5	1.966	0.539	0.491	-0.097
7	AHTk253	128	5	2.033	0.555	0.508	-0.092
8	C22.279	128	7	2.752	0.617	0.637	0.031
9	FH2001	128	8	3.907	0.742	0.744	0.002
10	FH2054	128	8	2.675	0.570	0.626	0.089
11	FH2848	128	9	3.979	0.820	0.749	-0.096
12	INRA21	128	6	3.109	0.656	0.678	0.033
13	INU005	128	5	2.068	0.516	0.516	0.002
14	INU030	128	5	2.423	0.555	0.587	0.056
15	INU055	128	5	1.558	0.313	0.358	0.128
16	LEI004	128	5	1.279	0.219	0.218	-0.002
17	REN105L03	128	7	4.254	0.750	0.765	0.020
18	REN162C04	128	5	4.197	0.797	0.762	-0.046
19	REN169D01	128	6	1.915	0.492	0.478	-0.030
20	REN169O18	128	6	2.105	0.523	0.525	0.003
21	REN247M23	128	5	2.081	0.555	0.519	-0.068
22	REN54P11	128	8	2.200	0.586	0.546	-0.074
23	REN64E19	128	6	2.446	0.539	0.591	0.088
24	VGL0760	128	9	4.380	0.813	0.772	-0.053
25	VGL0910	128	9	5.461	0.766	0.817	0.063
26	VGL1063	128	13	8.020	0.813	0.875	0.072
27	VGL1165	128	12	2.818	0.648	0.645	-0.005
28	VGL1828	128	6	2.182	0.555	0.542	-0.024
29	VGL2009	128	8	4.996	0.766	0.800	0.043
30	VGL2409	128	7	1.358	0.258	0.263	0.021
31	VGL2918	128	7	2.661	0.648	0.624	-0.039
32	VGL3008	128	12	3.210	0.695	0.688	-0.010
33	VGL3235	128	8	1.912	0.563	0.477	-0.179

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	128	9	1.816	0.469	0.449	-0.043
2	DLA I-4ACA	128	5	1.245	0.211	0.197	-0.072
3	DLA I-4BCT	128	5	1.283	0.211	0.220	0.043
4	DLA1131	128	7	1.783	0.461	0.439	-0.049
5	5ACA	128	5	1.765	0.461	0.433	-0.064
6	5ACT	128	5	1.352	0.234	0.260	0.100
7	5BCA	128	6	1.737	0.430	0.424	-0.013

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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