Statistics and Breed-wide Allele Frequency - Shikoku

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=136)
1054	382 379 277 184	0.015
1091	381 371 277 181	0.007
1133	378 365 287 172	0.566
1191	388 373 260 186	0.169
1229	381 369 277 188	0.092
1230	386 369 289 184	0.018
1231	389 371 277 186	0.099
1232	380 365 260 186	0.033

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=136)
2012	345 322 280	0.033
2018	339 324 284	0.169
2056	339 323 286	0.070
2067	343 322 284	0.007
2071	339 322 286	0.018
2077	347 325 286	0.566
2106	341 325 286	0.015
2122	351 325 286	0.099
2123	339 323 292	0.022

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=136)
1	AHT121	96	0.379
		98	0.077
		100	0.202
		102	0.147
		106	0.165
		108	0.029
2	AHT137	131	0.765
		133	0.121
		147	0.070
		151	0.044
3	AHTH130	115	0.794
		117	0.004
		119	0.007
		121	0.176
		125	0.004
		127	0.004
		133	0.011
4	AHTh171-A	219	0.971
		221	0.015
		237	0.015
5	AHTh260	236	0.342
		246	0.132
		248	0.526
6	AHTk211	89	0.824
		91	0.026
		95	0.151
7	AHTk253	282	0.327
		286	0.140
		288	0.382
		290	0.033
		292	0.103
		294	0.015
8	C22.279	110	0.254
		116	0.397
		118	0.276
		122	0.059
		130	0.015
9	FH2001	132	0.129
		136	0.033
		140	0.309
		144	0.180
		148	0.191
		152	0.018
		154	0.136
		158	0.004
10	FH2054	148	0.007
		152	0.029
		156	0.327
		160	0.114
		164	0.037
		168	0.474
		172	0.011
11	FH2848	230	0.029
		234	0.007
		238	0.893
		240	0.070
12	INRA21	95	0.004
		97	0.493
		99	0.107
		101	0.397
13	INU005	110	0.026
		124	0.658
		126	0.316
14	INU030	144	0.393
		146	0.331
		152	0.276
15	INU055	210	0.044
		214	0.007
		220	0.290
		222	0.651
		224	0.007
16	LEI004	95	0.401
		97	0.555
		107	0.026
		109	0.018
17	REN105L03	227	0.320
		231	0.147
		233	0.283
		239	0.140
		241	0.110
18	REN162C04	200	0.121
		206	0.868
		210	0.011
19	REN169D01	202	0.044
		212	0.563
		214	0.007
		216	0.386
20	REN169O18	160	0.342
		164	0.574
		168	0.022
		172	0.063
21	REN247M23	268	0.404
		270	0.114
		272	0.482
22	REN54P11	230	0.092
		236	0.243
		238	0.665
23	REN64E19	145	0.077
		147	0.011
		151	0.857
		153	0.055
24	VGL0760	12	0.566
		13	0.085
		14	0.096
		21.2	0.007
		23.2	0.246
25	VGL0910	17.1	0.118
		18.1	0.290
		19.1	0.537
		20.1	0.029
		24.1	0.022
		25.1	0.004
26	VGL1063	13	0.044
		14	0.772
		15	0.173
		16	0.004
		19	0.004
		20	0.004
27	VGL1165	20	0.717
		22	0.096
		23	0.007
		26	0.015
		28.2	0.165
28	VGL1828	18	0.099
		19	0.544
		20	0.110
		21	0.169
		22	0.077
29	VGL2009	10	0.070
		11	0.199
		13	0.629
		14	0.018
		15	0.085
30	VGL2409	13.3	0.375
		14	0.015
		15	0.268
		15.3	0.033
		16	0.224
		17	0.015
		18	0.070
31	VGL2918	13	0.254
		14	0.449
		15	0.059
		16	0.004
		17.3	0.199
		19.3	0.037
32	VGL3008	11	0.004
		12	0.463
		13	0.059
		15	0.357
		16	0.004
		17	0.048
		18	0.066
33	VGL3235	12	0.063
		15	0.063
		16	0.118
		17	0.011
		18	0.746

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	136	4.788	2.432	0.528	0.527	-0.003
	SE		0.249	0.162	0.032	0.031	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	136	5.000	2.285	0.491	0.551	0.108
	SE		0.404	0.128	0.026	0.030	0.010

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	136	6	4.165	0.846	0.760	-0.113
2	AHT137	136	4	1.649	0.426	0.394	-0.083
3	AHTH130	136	7	1.511	0.324	0.338	0.043
4	AHTh171-A	136	3	1.061	0.059	0.058	-0.023
5	AHTh260	136	3	2.434	0.603	0.589	-0.023
6	AHTk211	136	3	1.425	0.331	0.298	-0.109
7	AHTk253	136	6	3.513	0.721	0.715	-0.007
8	C22.279	136	5	3.314	0.743	0.698	-0.064
9	FH2001	136	8	4.978	0.721	0.799	0.098
10	FH2054	136	7	2.879	0.596	0.653	0.087
11	FH2848	136	4	1.244	0.206	0.196	-0.050
12	INRA21	136	4	2.429	0.574	0.588	0.025
13	INU005	136	3	1.874	0.485	0.466	-0.041
14	INU030	136	3	2.939	0.640	0.660	0.030
15	INU055	136	5	1.961	0.412	0.490	0.160
16	LEI004	136	4	2.129	0.603	0.530	-0.137
17	REN105L03	136	5	4.242	0.779	0.764	-0.020
18	REN162C04	136	3	1.303	0.206	0.232	0.114
19	REN169D01	136	4	2.139	0.596	0.533	-0.118
20	REN169O18	136	4	2.221	0.551	0.550	-0.003
21	REN247M23	136	3	2.448	0.618	0.592	-0.044
22	REN54P11	136	3	1.960	0.485	0.490	0.009
23	REN64E19	136	4	1.346	0.257	0.257	-0.001
24	VGL0760	136	5	2.515	0.566	0.602	0.060
25	VGL0910	136	6	2.579	0.603	0.612	0.015
26	VGL1063	136	6	1.593	0.375	0.372	-0.008
27	VGL1165	136	5	1.816	0.412	0.449	0.083
28	VGL1828	136	5	2.836	0.699	0.647	-0.079
29	VGL2009	136	5	2.237	0.522	0.553	0.056
30	VGL2409	136	7	3.713	0.728	0.731	0.004
31	VGL2918	136	6	3.228	0.699	0.690	-0.012
32	VGL3008	136	7	2.842	0.632	0.648	0.024
33	VGL3235	136	5	1.728	0.412	0.421	0.022

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	136	7	2.699	0.566	0.629	0.101
2	DLA I-4ACA	136	5	2.430	0.522	0.589	0.113
3	DLA I-4BCT	136	4	2.455	0.544	0.593	0.082
4	DLA1131	136	5	2.375	0.500	0.579	0.136
5	5ACA	136	6	2.440	0.500	0.590	0.153
6	5ACT	136	4	1.988	0.463	0.497	0.068
7	5BCA	136	4	1.605	0.338	0.377	0.103

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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