Statistics and Breed-wide Allele Frequency - Shikoku

Updated Jun 13, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesShikoku (n=63)
1054382 379 277 1840.008
1133378 365 287 1720.516
1191388 373 260 1860.222
1229381 369 277 1880.087
1230386 369 289 1840.024
1231389 371 277 1860.127
1232380 365 260 1860.016

DLA Class II Haplotype Frequencies

DLA2 #STR typesShikoku (n=63)
2012345 322 2800.016
2018339 324 2840.222
2056339 323 2860.048
2071339 322 2860.024
2077347 325 2860.516
2106341 325 2860.008
2122351 325 2860.127
2123339 323 2920.040

Allele Frequencies

#Locus NameAlleleShikoku (n=63)
1AHT121 960.381
980.056
1000.151
1020.159
1060.214
1080.040
2AHT137 1310.722
1330.127
1470.095
1510.056
3AHTH130 1150.746
1170.008
1210.238
1330.008
4AHTh171-A 2190.960
2210.016
2370.024
5AHTh260 2360.317
2460.135
2480.548
6AHTk211 890.825
910.032
950.143
7AHTk253 2820.341
2860.135
2880.405
2900.056
2920.056
2940.008
8C22.279 1100.294
1160.357
1180.278
1220.063
1300.008
9FH2001 1320.143
1360.016
1400.302
1440.175
1480.198
1520.016
1540.151
10FH2054 1480.008
1520.032
1560.302
1600.103
1640.040
1680.516
11FH2848 2300.016
2340.008
2380.937
2400.040
12INRA21 950.008
970.548
990.103
1010.341
13INU005 1100.040
1240.643
1260.317
14INU030 1440.365
1460.294
1520.341
15INU055 2100.040
2140.016
2200.286
2220.643
2240.016
16LEI004 950.357
970.611
1070.024
1090.008
17REN105L03 2270.270
2310.190
2330.310
2390.103
2410.127
18REN162C04 2000.159
2060.817
2100.024
19REN169D01 2020.071
2120.595
2140.008
2160.325
20REN169O18 1600.294
1640.603
1680.032
1720.071
21REN247M23 2680.357
2700.167
2720.476
22REN54P11 2300.111
2360.278
2380.611
23REN64E19 1450.063
1470.024
1510.849
1530.063
24VGL0760 120.571
130.056
140.111
21.20.016
23.20.246
25VGL0910 17.10.127
18.10.302
19.10.508
20.10.024
24.10.032
25.10.008
26VGL1063 130.032
140.802
150.151
160.008
200.008
27VGL1165 200.706
220.071
230.008
260.032
28.20.183
28VGL1828 180.111
190.556
200.103
210.135
220.095
29VGL2009 100.095
110.222
130.556
140.024
150.103
30VGL2409 13.30.381
150.270
15.30.024
160.222
170.008
180.095
31VGL2918 130.230
140.492
150.071
17.30.175
19.30.032
32VGL3008 110.008
120.444
130.048
150.365
170.071
180.063
33VGL3235 120.048
150.063
160.143
170.016
180.730

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

  NNaNeHoHeF
Mean634.5152.4450.5250.5330.017
 SE 0.1970.1570.0330.0300.016

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

  NNaNeHoHeF
Mean634.7142.4580.4630.5810.208
 SE 0.3890.1460.0290.0290.020

Standard genetic assessment for individual STR loci

Shikoku

#LocusNNaNeHoHeF
1AHT1216364.1040.8250.756-0.091
2AHT1376341.8190.4920.450-0.093
3AHTH1306341.6300.3810.3870.015
4AHTh171-A6331.0830.0790.077-0.031
5AHTh2606332.3870.6030.581-0.038
6AHTk2116331.4230.3020.297-0.014
7AHTk2536363.2820.6830.6950.018
8C22.2796353.3890.7620.705-0.081
9FH20016374.8910.7460.7960.062
10FH20546362.7000.5400.6300.143
11FH28486341.1380.1270.121-0.049
12INRA216342.3420.4440.5730.224
13INU0056331.9390.4440.4840.082
14INU0306332.9760.6350.6640.044
15INU0556352.0120.4290.5030.148
16LEI0046341.9930.5400.498-0.083
17REN105L036354.3160.8250.768-0.074
18REN162C046331.4410.2700.3060.118
19REN169D016342.1490.5710.535-0.069
20REN169O186342.1920.4920.5440.095
21REN247M236332.6170.6350.618-0.028
22REN54P116332.1600.6190.537-0.153
23REN64E196341.3700.2700.2700.001
24VGL07606352.4830.5560.5970.070
25VGL09106362.7270.6030.6330.048
26VGL10636351.5010.3020.3340.096
27VGL11656351.8570.3810.4620.175
28VGL18286352.7860.6980.641-0.089
29VGL20096352.6430.6030.6220.030
30VGL24096363.6100.7460.723-0.032
31VGL29186353.0150.6830.668-0.021
32VGL30086362.9220.6510.6580.011
33VGL32356351.7850.3810.4400.134

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#LocusNNaNeHoHeF
1DLA I-3CCA6372.9400.5400.6600.182
2DLA I-4ACA6352.7730.5240.6390.181
3DLA I-4BCT6342.6830.5240.6270.165
4DLA11316342.4510.4290.5920.276
55ACA6352.5400.4760.6060.215
65ACT6342.0740.4440.5180.142
75BCA6341.7460.3020.4270.294