Statistics and Breed-wide Allele Frequency - Shikoku

Updated Jul 11, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=200)
1054	382 379 277 184	0.020
1091	381 371 277 181	0.005
1133	378 365 287 172	0.515
1191	388 373 260 186	0.190
1229	381 369 277 188	0.095
1230	386 369 289 184	0.018
1231	389 371 277 186	0.087
1232	380 365 260 186	0.070

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=200)
2012	345 322 280	0.070
2018	339 324 284	0.190
2056	339 323 286	0.075
2067	343 322 284	0.005
2071	339 322 286	0.018
2077	347 325 286	0.515
2106	341 325 286	0.020
2122	351 325 286	0.087
2123	339 323 292	0.020

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=200)
1	AHT121	96	0.395
		98	0.090
		100	0.175
		102	0.143
		106	0.158
		108	0.035
		110	0.003
		114	0.003
2	AHT137	131	0.753
		133	0.135
		147	0.070
		151	0.043
3	AHTH130	115	0.805
		117	0.003
		119	0.005
		121	0.168
		125	0.005
		127	0.005
		133	0.010
4	AHTh171-A	219	0.963
		221	0.020
		235	0.003
		237	0.015
5	AHTh260	236	0.353
		246	0.135
		248	0.513
6	AHTk211	89	0.818
		91	0.033
		95	0.150
7	AHTk253	282	0.315
		286	0.170
		288	0.368
		290	0.023
		292	0.103
		294	0.023
8	C22.279	110	0.245
		116	0.420
		118	0.265
		122	0.050
		130	0.020
9	FH2001	132	0.105
		136	0.038
		140	0.295
		144	0.175
		148	0.220
		152	0.015
		154	0.148
		158	0.005
10	FH2054	148	0.005
		152	0.028
		156	0.348
		160	0.115
		164	0.053
		168	0.438
		172	0.015
11	FH2848	230	0.040
		234	0.005
		238	0.865
		240	0.090
12	INRA21	95	0.003
		97	0.468
		99	0.128
		101	0.403
13	INU005	110	0.050
		124	0.665
		126	0.283
		130	0.003
14	INU030	144	0.393
		146	0.350
		152	0.258
15	INU055	210	0.043
		214	0.005
		220	0.318
		222	0.630
		224	0.005
16	LEI004	95	0.390
		97	0.530
		107	0.053
		109	0.028
17	REN105L03	227	0.375
		231	0.140
		233	0.255
		239	0.140
		241	0.090
18	REN162C04	200	0.120
		206	0.870
		210	0.010
19	REN169D01	202	0.055
		212	0.550
		214	0.005
		216	0.390
20	REN169O18	160	0.353
		164	0.565
		168	0.020
		172	0.063
21	REN247M23	268	0.440
		270	0.100
		272	0.460
22	REN54P11	230	0.098
		236	0.250
		238	0.653
23	REN64E19	145	0.085
		147	0.015
		151	0.853
		153	0.048
24	VGL0760	12	0.563
		13	0.098
		14	0.095
		21.2	0.005
		23.2	0.240
25	VGL0910	17.1	0.120
		18.1	0.270
		19.1	0.543
		20.1	0.043
		24.1	0.023
		25.1	0.003
26	VGL1063	13	0.053
		14	0.775
		15	0.160
		16	0.005
		19	0.005
		20	0.003
27	VGL1165	20	0.735
		22	0.090
		23	0.005
		26	0.013
		28.2	0.158
28	VGL1828	18	0.100
		19	0.500
		20	0.155
		21	0.145
		22	0.100
29	VGL2009	10	0.055
		11	0.170
		13	0.645
		14	0.020
		15	0.110
30	VGL2409	13.3	0.388
		14	0.010
		14.3	0.003
		15	0.240
		15.3	0.028
		16	0.238
		17	0.020
		18	0.075
31	VGL2918	13	0.245
		14	0.483
		15	0.050
		16	0.005
		17.3	0.188
		19.3	0.030
32	VGL3008	11	0.003
		12	0.443
		13	0.060
		15	0.363
		16	0.008
		17	0.053
		18	0.073
33	VGL3235	12	0.068
		15	0.070
		16	0.110
		17	0.013
		18	0.740

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	200	4.939	2.450	0.532	0.532	-0.002
	SE		0.264	0.159	0.031	0.030	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	200	5.000	2.505	0.559	0.591	0.054
	SE		0.404	0.139	0.024	0.026	0.006

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	200	8	4.148	0.810	0.759	-0.067
2	AHT137	200	4	1.692	0.445	0.409	-0.089
3	AHTH130	200	7	1.479	0.305	0.324	0.058
4	AHTh171-A	200	4	1.079	0.075	0.073	-0.028
5	AHTh260	200	3	2.468	0.595	0.595	-0.000
6	AHTk211	200	3	1.445	0.350	0.308	-0.136
7	AHTk253	200	6	3.640	0.740	0.725	-0.020
8	C22.279	200	5	3.230	0.720	0.690	-0.043
9	FH2001	200	8	4.988	0.760	0.800	0.049
10	FH2054	200	7	3.038	0.590	0.671	0.121
11	FH2848	200	4	1.319	0.250	0.242	-0.033
12	INRA21	200	4	2.520	0.625	0.603	-0.036
13	INU005	200	4	1.906	0.455	0.475	0.043
14	INU030	200	3	2.917	0.645	0.657	0.018
15	INU055	200	5	2.002	0.420	0.500	0.161
16	LEI004	200	4	2.291	0.605	0.563	-0.074
17	REN105L03	200	5	3.953	0.750	0.747	-0.004
18	REN162C04	200	3	1.296	0.210	0.229	0.081
19	REN169D01	200	4	2.185	0.575	0.542	-0.060
20	REN169O18	200	4	2.233	0.575	0.552	-0.041
21	REN247M23	200	3	2.408	0.565	0.585	0.034
22	REN54P11	200	3	2.009	0.500	0.502	0.004
23	REN64E19	200	4	1.358	0.270	0.264	-0.025
24	VGL0760	200	5	2.547	0.570	0.607	0.062
25	VGL0910	200	6	2.605	0.635	0.616	-0.031
26	VGL1063	200	6	1.590	0.395	0.371	-0.065
27	VGL1165	200	5	1.744	0.395	0.427	0.074
28	VGL1828	200	5	3.174	0.740	0.685	-0.080
29	VGL2009	200	5	2.172	0.510	0.540	0.055
30	VGL2409	200	8	3.689	0.690	0.729	0.053
31	VGL2918	200	6	3.017	0.675	0.669	-0.010
32	VGL3008	200	7	2.951	0.685	0.661	-0.036
33	VGL3235	200	5	1.757	0.425	0.431	0.013

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	200	7	3.081	0.645	0.675	0.045
2	DLA I-4ACA	200	5	2.500	0.550	0.600	0.083
3	DLA I-4BCT	200	4	2.658	0.605	0.624	0.030
4	DLA1131	200	5	2.522	0.565	0.604	0.064
5	5ACA	200	6	2.705	0.590	0.630	0.064
6	5ACT	200	4	2.267	0.535	0.559	0.043
7	5BCA	200	4	1.803	0.425	0.445	0.046

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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