Statistics and Breed-wide Allele Frequency - Shikoku

Updated Nov 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=223)
1054	382 379 277 184	0.018
1091	381 371 277 181	0.004
1133	378 365 287 172	0.520
1191	388 373 260 186	0.179
1229	381 369 277 188	0.103
1230	386 369 289 184	0.016
1231	389 371 277 186	0.083
1232	380 365 260 186	0.076

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=223)
2012	345 322 280	0.076
2018	339 324 284	0.179
2056	339 323 286	0.081
2067	343 322 284	0.004
2071	339 322 286	0.016
2077	347 325 286	0.518
2093	347 327 286	0.002
2106	341 325 286	0.018
2122	351 325 286	0.083
2123	339 323 292	0.022

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=223)
1	AHT121	96	0.381
		98	0.101
		100	0.184
		102	0.143
		106	0.155
		108	0.031
		110	0.002
		114	0.002
2	AHT137	131	0.753
		133	0.143
		147	0.063
		151	0.040
3	AHTH130	115	0.798
		117	0.007
		119	0.004
		121	0.170
		125	0.004
		127	0.007
		133	0.009
4	AHTh171-A	219	0.964
		221	0.020
		235	0.002
		237	0.013
5	AHTh260	236	0.354
		246	0.141
		248	0.504
6	AHTk211	89	0.821
		91	0.034
		95	0.146
7	AHTk253	282	0.300
		286	0.182
		288	0.370
		290	0.020
		292	0.108
		294	0.020
8	C22.279	110	0.242
		116	0.426
		118	0.265
		122	0.049
		130	0.018
9	FH2001	132	0.105
		136	0.034
		140	0.283
		144	0.179
		148	0.231
		152	0.013
		154	0.150
		158	0.004
10	FH2054	148	0.004
		152	0.027
		156	0.352
		160	0.112
		164	0.058
		168	0.430
		172	0.016
11	FH2848	230	0.036
		234	0.007
		238	0.863
		240	0.094
12	INRA21	95	0.002
		97	0.475
		99	0.126
		101	0.397
13	INU005	110	0.049
		124	0.661
		126	0.287
		130	0.002
14	INU030	144	0.363
		146	0.383
		152	0.253
15	INU055	210	0.043
		214	0.004
		220	0.325
		222	0.623
		224	0.004
16	LEI004	95	0.388
		97	0.529
		107	0.054
		109	0.029
17	REN105L03	227	0.377
		231	0.139
		233	0.251
		239	0.141
		241	0.092
18	REN162C04	200	0.130
		206	0.857
		210	0.013
19	REN169D01	202	0.054
		212	0.549
		214	0.004
		216	0.392
20	REN169O18	160	0.370
		164	0.556
		168	0.018
		172	0.056
21	REN247M23	268	0.439
		270	0.099
		272	0.462
22	REN54P11	230	0.094
		236	0.251
		238	0.655
23	REN64E19	145	0.083
		147	0.018
		151	0.850
		153	0.049
24	VGL0760	12	0.549
		13	0.105
		14	0.101
		21.2	0.004
		23.2	0.240
25	VGL0910	17.1	0.130
		18.1	0.276
		19.1	0.520
		20.1	0.049
		24.1	0.020
		25.1	0.004
26	VGL1063	13	0.049
		14	0.780
		15	0.148
		16	0.007
		17	0.002
		19	0.011
		20	0.002
27	VGL1165	20	0.724
		22	0.085
		23	0.004
		26	0.016
		28.2	0.170
28	VGL1828	18	0.099
		19	0.502
		20	0.152
		21	0.152
		22	0.094
29	VGL2009	10	0.049
		11	0.173
		13	0.646
		14	0.018
		15	0.114
30	VGL2409	13.3	0.368
		14	0.009
		14.3	0.004
		15	0.233
		15.3	0.025
		16	0.265
		17	0.022
		18	0.074
31	VGL2918	13	0.260
		14	0.484
		15	0.052
		16	0.004
		17.3	0.173
		19.3	0.027
32	VGL3008	11	0.002
		12	0.422
		13	0.054
		15	0.383
		16	0.007
		17	0.056
		18	0.076
33	VGL3235	12	0.074
		15	0.067
		16	0.101
		17	0.013
		18	0.742
		19	0.002

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	223	5.000	2.464	0.532	0.534	0.001
	SE		0.271	0.161	0.031	0.030	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	223	5.143	2.490	0.562	0.589	0.044
	SE		0.374	0.135	0.024	0.025	0.009

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	223	8	4.259	0.816	0.765	-0.067
2	AHT137	223	4	1.684	0.435	0.406	-0.071
3	AHTH130	223	7	1.501	0.314	0.334	0.059
4	AHTh171-A	223	4	1.075	0.072	0.070	-0.027
5	AHTh260	223	3	2.500	0.605	0.600	-0.009
6	AHTk211	223	3	1.437	0.345	0.304	-0.135
7	AHTk253	223	6	3.669	0.744	0.727	-0.023
8	C22.279	223	5	3.196	0.717	0.687	-0.044
9	FH2001	223	8	4.992	0.758	0.800	0.052
10	FH2054	223	7	3.066	0.596	0.674	0.115
11	FH2848	223	4	1.324	0.256	0.245	-0.045
12	INRA21	223	4	2.505	0.628	0.601	-0.045
13	INU005	223	4	1.915	0.466	0.478	0.024
14	INU030	223	3	2.914	0.619	0.657	0.058
15	INU055	223	5	2.016	0.426	0.504	0.155
16	LEI004	223	4	2.303	0.587	0.566	-0.038
17	REN105L03	223	5	3.958	0.744	0.747	0.004
18	REN162C04	223	3	1.332	0.224	0.249	0.101
19	REN169D01	223	4	2.180	0.565	0.541	-0.044
20	REN169O18	223	4	2.225	0.552	0.550	-0.002
21	REN247M23	223	3	2.403	0.578	0.584	0.009
22	REN54P11	223	3	1.998	0.493	0.499	0.012
23	REN64E19	223	4	1.367	0.278	0.268	-0.036
24	VGL0760	223	5	2.627	0.596	0.619	0.037
25	VGL0910	223	6	2.729	0.641	0.634	-0.012
26	VGL1063	223	7	1.579	0.390	0.367	-0.064
27	VGL1165	223	5	1.782	0.399	0.439	0.091
28	VGL1828	223	5	3.151	0.731	0.683	-0.071
29	VGL2009	223	5	2.162	0.525	0.537	0.024
30	VGL2409	223	8	3.756	0.686	0.734	0.065
31	VGL2918	223	6	2.981	0.682	0.665	-0.026
32	VGL3008	223	7	2.971	0.668	0.663	-0.007
33	VGL3235	223	6	1.751	0.426	0.429	0.007

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	223	7	3.052	0.646	0.672	0.040
2	DLA I-4ACA	223	5	2.439	0.534	0.590	0.096
3	DLA I-4BCT	223	4	2.634	0.605	0.620	0.024
4	DLA1131	223	5	2.519	0.574	0.603	0.048
5	5ACA	223	6	2.684	0.596	0.627	0.049
6	5ACT	223	5	2.298	0.547	0.565	0.032
7	5BCA	223	4	1.802	0.435	0.445	0.023

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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