Statistics and Breed-wide Allele Frequency - Shikoku

Updated Jan 21, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=151)
1054	382 379 277 184	0.017
1091	381 371 277 181	0.007
1133	378 365 287 172	0.553
1191	388 373 260 186	0.179
1229	381 369 277 188	0.096
1230	386 369 289 184	0.017
1231	389 371 277 186	0.096
1232	380 365 260 186	0.036

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=151)
2012	345 322 280	0.036
2018	339 324 284	0.179
2056	339 323 286	0.073
2067	343 322 284	0.007
2071	339 322 286	0.017
2077	347 325 286	0.553
2106	341 325 286	0.017
2122	351 325 286	0.096
2123	339 323 292	0.023

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=152)
1	AHT121	96	0.398
		98	0.079
		100	0.197
		102	0.148
		106	0.151
		108	0.026
2	AHT137	131	0.757
		133	0.125
		147	0.076
		151	0.043
3	AHTH130	115	0.806
		117	0.003
		119	0.007
		121	0.164
		125	0.003
		127	0.003
		133	0.013
4	AHTh171-A	219	0.967
		221	0.016
		235	0.003
		237	0.013
5	AHTh260	236	0.336
		246	0.132
		248	0.533
6	AHTk211	89	0.822
		91	0.033
		95	0.145
7	AHTk253	282	0.326
		286	0.145
		288	0.375
		290	0.030
		292	0.102
		294	0.023
8	C22.279	110	0.253
		116	0.391
		118	0.283
		122	0.053
		130	0.020
9	FH2001	132	0.122
		136	0.030
		140	0.313
		144	0.174
		148	0.197
		152	0.020
		154	0.141
		158	0.003
10	FH2054	148	0.007
		152	0.030
		156	0.355
		160	0.122
		164	0.039
		168	0.438
		172	0.010
11	FH2848	230	0.033
		234	0.007
		238	0.882
		240	0.079
12	INRA21	95	0.003
		97	0.487
		99	0.109
		101	0.401
13	INU005	110	0.030
		124	0.678
		126	0.293
14	INU030	144	0.405
		146	0.326
		152	0.270
15	INU055	210	0.039
		214	0.007
		220	0.316
		222	0.632
		224	0.007
16	LEI004	95	0.398
		97	0.543
		107	0.043
		109	0.016
17	REN105L03	227	0.319
		231	0.145
		233	0.293
		239	0.135
		241	0.109
18	REN162C04	200	0.122
		206	0.868
		210	0.010
19	REN169D01	202	0.056
		212	0.546
		214	0.007
		216	0.391
20	REN169O18	160	0.329
		164	0.579
		168	0.020
		172	0.072
21	REN247M23	268	0.395
		270	0.122
		272	0.484
22	REN54P11	230	0.089
		236	0.253
		238	0.658
23	REN64E19	145	0.076
		147	0.013
		151	0.859
		153	0.053
24	VGL0760	12	0.576
		13	0.093
		14	0.093
		21.2	0.007
		23.2	0.232
25	VGL0910	17.1	0.113
		18.1	0.278
		19.1	0.550
		20.1	0.036
		24.1	0.020
		25.1	0.003
26	VGL1063	13	0.040
		14	0.785
		15	0.166
		16	0.003
		19	0.003
		20	0.003
27	VGL1165	20	0.725
		22	0.096
		23	0.007
		26	0.013
		28.2	0.159
28	VGL1828	18	0.106
		19	0.530
		20	0.119
		21	0.162
		22	0.083
29	VGL2009	10	0.063
		11	0.185
		13	0.632
		14	0.017
		15	0.103
30	VGL2409	13.3	0.381
		14	0.013
		15	0.242
		15.3	0.030
		16	0.232
		17	0.020
		18	0.083
31	VGL2918	13	0.242
		14	0.477
		15	0.053
		16	0.003
		17.3	0.192
		19.3	0.033
32	VGL3008	11	0.003
		12	0.467
		13	0.063
		15	0.351
		16	0.003
		17	0.046
		18	0.066
33	VGL3235	12	0.063
		15	0.066
		16	0.116
		17	0.010
		18	0.745

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	152	4.818	2.431	0.529	0.527	-0.001
	SE		0.244	0.160	0.032	0.031	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	152	5.000	2.341	0.500	0.562	0.110
	SE		0.404	0.130	0.026	0.029	0.008

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	152	6	4.014	0.836	0.751	-0.113
2	AHT137	152	4	1.679	0.441	0.404	-0.090
3	AHTH130	152	7	1.478	0.296	0.323	0.084
4	AHTh171-A	152	4	1.069	0.066	0.064	-0.024
5	AHTh260	152	3	2.416	0.605	0.586	-0.033
6	AHTk211	152	3	1.432	0.336	0.302	-0.112
7	AHTk253	152	6	3.579	0.737	0.721	-0.023
8	C22.279	152	5	3.327	0.750	0.699	-0.072
9	FH2001	152	8	4.924	0.743	0.797	0.067
10	FH2054	152	7	2.985	0.592	0.665	0.110
11	FH2848	152	4	1.275	0.217	0.215	-0.008
12	INRA21	152	4	2.440	0.599	0.590	-0.014
13	INU005	152	3	1.832	0.467	0.454	-0.028
14	INU030	152	3	2.920	0.632	0.657	0.039
15	INU055	152	5	1.999	0.428	0.500	0.144
16	LEI004	152	4	2.197	0.599	0.545	-0.099
17	REN105L03	152	5	4.194	0.776	0.762	-0.019
18	REN162C04	152	3	1.300	0.211	0.231	0.088
19	REN169D01	152	4	2.200	0.599	0.545	-0.098
20	REN169O18	152	4	2.227	0.572	0.551	-0.039
21	REN247M23	152	3	2.472	0.618	0.596	-0.038
22	REN54P11	152	3	1.981	0.493	0.495	0.003
23	REN64E19	152	4	1.341	0.250	0.254	0.017
24	VGL0760	152	5	2.482	0.563	0.597	0.057
25	VGL0910	152	6	2.539	0.609	0.606	-0.005
26	VGL1063	152	6	1.551	0.358	0.355	-0.007
27	VGL1165	152	5	1.784	0.391	0.439	0.111
28	VGL1828	152	5	2.947	0.702	0.661	-0.062
29	VGL2009	152	5	2.226	0.510	0.551	0.074
30	VGL2409	152	7	3.767	0.715	0.735	0.026
31	VGL2918	152	6	3.062	0.682	0.673	-0.013
32	VGL3008	152	7	2.843	0.649	0.648	-0.001
33	VGL3235	152	5	1.733	0.411	0.423	0.029

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	152	7	2.782	0.576	0.641	0.101
2	DLA I-4ACA	152	5	2.482	0.523	0.597	0.124
3	DLA I-4BCT	152	4	2.508	0.556	0.601	0.075
4	DLA1131	152	5	2.421	0.517	0.587	0.120
5	5ACA	152	6	2.490	0.510	0.598	0.148
6	5ACT	152	4	2.050	0.464	0.512	0.095
7	5BCA	152	4	1.650	0.351	0.394	0.109

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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