Statistics and Breed-wide Allele Frequency - Shikoku

Updated Oct 6, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=222)
1054	382 379 277 184	0.018
1091	381 371 277 181	0.005
1133	378 365 287 172	0.518
1191	388 373 260 186	0.180
1229	381 369 277 188	0.104
1230	386 369 289 184	0.016
1231	389 371 277 186	0.083
1232	380 365 260 186	0.077

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=222)
2012	345 322 280	0.077
2018	339 324 284	0.180
2056	339 323 286	0.081
2067	343 322 284	0.005
2071	339 322 286	0.016
2077	347 325 286	0.516
2093	347 327 286	0.002
2106	341 325 286	0.018
2122	351 325 286	0.083
2123	339 323 292	0.023

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=222)
1	AHT121	96	0.381
		98	0.101
		100	0.185
		102	0.144
		106	0.153
		108	0.032
		110	0.002
		114	0.002
2	AHT137	131	0.752
		133	0.144
		147	0.063
		151	0.041
3	AHTH130	115	0.797
		117	0.007
		119	0.005
		121	0.171
		125	0.005
		127	0.007
		133	0.009
4	AHTh171-A	219	0.964
		221	0.020
		235	0.002
		237	0.014
5	AHTh260	236	0.356
		246	0.142
		248	0.502
6	AHTk211	89	0.820
		91	0.034
		95	0.146
7	AHTk253	282	0.300
		286	0.182
		288	0.369
		290	0.020
		292	0.108
		294	0.020
8	C22.279	110	0.243
		116	0.426
		118	0.264
		122	0.050
		130	0.018
9	FH2001	132	0.106
		136	0.034
		140	0.284
		144	0.176
		148	0.232
		152	0.014
		154	0.151
		158	0.005
10	FH2054	148	0.005
		152	0.027
		156	0.354
		160	0.113
		164	0.059
		168	0.428
		172	0.016
11	FH2848	230	0.036
		234	0.005
		238	0.865
		240	0.095
12	INRA21	95	0.002
		97	0.477
		99	0.126
		101	0.394
13	INU005	110	0.050
		124	0.660
		126	0.288
		130	0.002
14	INU030	144	0.365
		146	0.381
		152	0.255
15	INU055	210	0.041
		214	0.005
		220	0.327
		222	0.624
		224	0.005
16	LEI004	95	0.385
		97	0.532
		107	0.054
		109	0.029
17	REN105L03	227	0.376
		231	0.137
		233	0.252
		239	0.142
		241	0.092
18	REN162C04	200	0.128
		206	0.858
		210	0.014
19	REN169D01	202	0.054
		212	0.547
		214	0.005
		216	0.394
20	REN169O18	160	0.369
		164	0.556
		168	0.018
		172	0.056
21	REN247M23	268	0.437
		270	0.099
		272	0.464
22	REN54P11	230	0.092
		236	0.252
		238	0.655
23	REN64E19	145	0.083
		147	0.018
		151	0.849
		153	0.050
24	VGL0760	12	0.552
		13	0.104
		14	0.101
		21.2	0.005
		23.2	0.239
25	VGL0910	17.1	0.131
		18.1	0.275
		19.1	0.523
		20.1	0.050
		24.1	0.020
		25.1	0.002
26	VGL1063	13	0.050
		14	0.782
		15	0.146
		16	0.007
		17	0.002
		19	0.011
		20	0.002
27	VGL1165	20	0.725
		22	0.086
		23	0.005
		26	0.016
		28.2	0.169
28	VGL1828	18	0.099
		19	0.502
		20	0.153
		21	0.151
		22	0.095
29	VGL2009	10	0.050
		11	0.171
		13	0.646
		14	0.018
		15	0.115
30	VGL2409	13.3	0.369
		14	0.009
		14.3	0.005
		15	0.232
		15.3	0.025
		16	0.264
		17	0.023
		18	0.074
31	VGL2918	13	0.259
		14	0.484
		15	0.052
		16	0.005
		17.3	0.173
		19.3	0.027
32	VGL3008	11	0.002
		12	0.421
		13	0.054
		15	0.383
		16	0.007
		17	0.056
		18	0.077
33	VGL3235	12	0.074
		15	0.068
		16	0.101
		17	0.014
		18	0.741
		19	0.002

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	222	5.000	2.464	0.532	0.534	0.002
	SE		0.271	0.161	0.031	0.030	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	222	5.143	2.499	0.565	0.590	0.043
	SE		0.374	0.136	0.024	0.025	0.009

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	222	8	4.264	0.815	0.766	-0.065
2	AHT137	222	4	1.688	0.437	0.408	-0.072
3	AHTH130	222	7	1.503	0.315	0.335	0.058
4	AHTh171-A	222	4	1.075	0.072	0.070	-0.027
5	AHTh260	222	3	2.506	0.608	0.601	-0.012
6	AHTk211	222	3	1.440	0.347	0.305	-0.136
7	AHTk253	222	6	3.677	0.743	0.728	-0.021
8	C22.279	222	5	3.199	0.716	0.687	-0.042
9	FH2001	222	8	4.987	0.761	0.799	0.048
10	FH2054	222	7	3.074	0.599	0.675	0.112
11	FH2848	222	4	1.319	0.252	0.242	-0.043
12	INRA21	222	4	2.505	0.631	0.601	-0.050
13	INU005	222	4	1.919	0.468	0.479	0.022
14	INU030	222	3	2.917	0.622	0.657	0.054
15	INU055	222	5	2.010	0.423	0.502	0.157
16	LEI004	222	4	2.301	0.590	0.565	-0.044
17	REN105L03	222	5	3.958	0.743	0.747	0.006
18	REN162C04	222	3	1.328	0.221	0.247	0.106
19	REN169D01	222	4	2.184	0.568	0.542	-0.047
20	REN169O18	222	4	2.225	0.550	0.551	0.002
21	REN247M23	222	3	2.404	0.581	0.584	0.005
22	REN54P11	222	3	1.993	0.491	0.498	0.015
23	REN64E19	222	4	1.369	0.279	0.269	-0.037
24	VGL0760	222	5	2.614	0.595	0.617	0.037
25	VGL0910	222	6	2.714	0.640	0.632	-0.013
26	VGL1063	222	7	1.575	0.387	0.365	-0.061
27	VGL1165	222	5	1.779	0.396	0.438	0.095
28	VGL1828	222	5	3.152	0.730	0.683	-0.069
29	VGL2009	222	5	2.159	0.523	0.537	0.027
30	VGL2409	222	8	3.753	0.685	0.734	0.067
31	VGL2918	222	6	2.984	0.680	0.665	-0.023
32	VGL3008	222	7	2.976	0.667	0.664	-0.004
33	VGL3235	222	6	1.756	0.428	0.430	0.006

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	222	7	3.069	0.649	0.674	0.038
2	DLA I-4ACA	222	5	2.449	0.536	0.592	0.094
3	DLA I-4BCT	222	4	2.643	0.608	0.622	0.022
4	DLA1131	222	5	2.526	0.577	0.604	0.046
5	5ACA	222	6	2.694	0.599	0.629	0.047
6	5ACT	222	5	2.307	0.550	0.567	0.030
7	5BCA	222	4	1.807	0.437	0.447	0.022

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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