Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Mar 22, 2023

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiloh Shepherd (n=39)
1052380 372 289 1840.27
1068380 373 287 1810.54
1165392 369 281 1820.15
1166388 379 277 1840.03
1167397 381 277 1840.01

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiloh Shepherd (n=39)
2017343 322 2800.27
2022339 327 2820.03
2053343 324 2800.55
2080339 325 2760.15

Allele Frequencies

#Locus NameAlleleShiloh Shepherd (n=39)
1AHT121 880.03
980.29
1020.53
1040.04
1080.09
1120.03
2AHT137 1310.14
1370.85
1390.01
3AHTH130 1230.19
1250.01
1270.71
1310.09
4AHTh171-A 2190.12
2230.36
2250.21
2330.32
5AHTh260 2380.24
2420.58
2460.13
2520.05
6AHTk211 890.32
910.04
950.64
7AHTk253 2880.87
2920.13
8C22.279 1160.60
1180.09
1260.31
9FH2001 1240.05
1320.06
1440.68
1480.21
10FH2054 1480.03
1520.50
1560.19
1640.05
1680.21
1760.03
11FH2848 2320.06
2340.01
2380.36
2400.45
2420.12
12INRA21 910.01
950.36
970.15
990.19
1010.28
13INU005 1240.36
1260.51
1320.13
14INU030 1460.08
1480.12
1500.62
1520.19
15INU055 2100.65
2180.22
2200.13
16LEI004 850.71
950.28
1070.01
17REN105L03 2270.09
2310.12
2330.05
2350.18
2410.56
18REN162C04 2000.38
2040.03
2060.35
2120.24
19REN169D01 2120.13
2160.87
20REN169O18 1620.08
1640.06
1660.55
1680.24
1740.06
21REN247M23 2680.44
2700.09
2720.01
2760.03
2780.44
22REN54P11 2260.60
2320.03
2340.35
2400.03
23REN64E19 1390.09
1470.05
1510.05
1530.10
1550.71
24VGL0760 130.03
18.20.09
19.20.15
20.20.04
21.20.41
22.20.27
23.20.01
25VGL0910 130.18
17.10.17
19.10.17
20.10.36
21.10.12
22.10.01
26VGL1063 100.05
120.83
140.05
150.03
180.04
27VGL1165 140.08
150.24
170.04
190.03
220.19
250.22
280.14
290.06
28VGL1828 150.03
170.09
190.86
200.03
29VGL2009 110.92
120.03
140.04
150.01
30VGL2409 150.62
160.19
170.15
180.04
31VGL2918 130.21
140.31
20.30.17
21.30.32
32VGL3008 100.01
150.26
160.09
170.23
180.18
200.09
210.14
33VGL3235 140.46
150.26
160.26
170.03

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

  NNaNeHoHeF
Mean394.3942.5850.5870.547-0.068
 SE 0.2380.1890.0350.0310.016

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

  NNaNeHoHeF
Mean393.5712.0630.4910.477-0.041
 SE 0.3410.2040.0520.0560.017

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#LocusNNaNeHoHeF
1AHT1213962.6730.7180.626-0.147
2AHT1373931.3590.2560.2640.029
3AHTH1303941.8440.5380.458-0.177
4AHTh171-A3943.4850.7950.713-0.115
5AHTh2603942.4320.6150.589-0.045
6AHTk2113931.9410.5900.485-0.216
7AHTk2533921.2880.2560.224-0.147
8C22.2793932.1470.5900.534-0.104
9FH20013941.9590.4870.4890.005
10FH20543963.0030.6920.667-0.038
11FH28483952.8750.6670.652-0.022
12INRA213953.7140.7690.731-0.053
13INU0053932.4490.6670.592-0.127
14INU0303942.2990.6920.565-0.225
15INU0553932.0350.4870.5090.042
16LEI0043931.7330.4360.423-0.030
17REN105L033952.6710.6920.626-0.107
18REN162C043943.0510.7690.672-0.144
19REN169D013921.2880.2560.224-0.147
20REN169O183952.6500.7440.623-0.194
21REN247M233952.5710.5900.6110.035
22REN54P113942.0650.5900.516-0.143
23REN64E193951.9190.4360.4790.090
24VGL07603973.6390.7440.725-0.025
25VGL09103964.3460.7440.7700.034
26VGL10633951.4250.2560.2980.140
27VGL11653985.6860.8720.824-0.058
28VGL18283941.3380.2310.2530.087
29VGL20093941.1700.1540.146-0.056
30VGL24093942.2680.6150.559-0.101
31VGL29183943.7420.7180.7330.020
32VGL30083975.3370.9230.813-0.136
33VGL32353942.8970.7690.655-0.175

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#LocusNNaNeHoHeF
1DLA I-3CCA3941.4770.3590.323-0.111
2DLA I-4ACA3952.5850.6150.613-0.004
3DLA I-4BCT3942.5800.6150.612-0.005
4DLA11313932.4490.6150.592-0.040
55ACA3921.4180.3080.295-0.045
65ACT3942.4950.5900.5990.016
75BCA3931.4340.3330.302-0.102