Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Oct 5, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=119)
1035	386 373 277 184	0.017
1052	380 372 289 184	0.361
1068	380 373 287 181	0.487
1165	392 369 281 182	0.071
1166	388 379 277 184	0.042
1167	397 381 277 184	0.021

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=119)
2017	343 322 280	0.361
2022	339 327 282	0.042
2026	351 324 284	0.017
2053	343 324 280	0.508
2080	339 325 276	0.071

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=119)
1	AHT121	88	0.013
		98	0.282
		102	0.529
		104	0.080
		108	0.088
		112	0.008
2	AHT137	131	0.126
		137	0.840
		139	0.017
		147	0.008
		149	0.004
		153	0.004
3	AHTH130	123	0.160
		125	0.042
		127	0.718
		131	0.080
4	AHTh171-A	219	0.118
		223	0.357
		225	0.189
		233	0.336
5	AHTh260	238	0.231
		242	0.559
		244	0.004
		246	0.139
		248	0.004
		252	0.063
6	AHTk211	87	0.063
		89	0.357
		91	0.034
		93	0.008
		95	0.538
7	AHTk253	286	0.004
		288	0.803
		292	0.193
8	C22.279	116	0.647
		118	0.080
		126	0.273
9	FH2001	124	0.063
		132	0.038
		144	0.643
		148	0.256
10	FH2054	148	0.034
		152	0.525
		156	0.122
		164	0.042
		168	0.235
		176	0.042
11	FH2848	232	0.059
		234	0.042
		238	0.336
		240	0.412
		242	0.151
12	INRA21	91	0.004
		95	0.210
		97	0.134
		99	0.286
		101	0.366
13	INU005	124	0.374
		126	0.580
		132	0.046
14	INU030	146	0.055
		148	0.059
		150	0.718
		152	0.168
15	INU055	210	0.672
		214	0.029
		218	0.197
		220	0.101
16	LEI004	85	0.622
		95	0.374
		107	0.004
17	REN105L03	227	0.101
		231	0.101
		233	0.084
		235	0.248
		241	0.466
18	REN162C04	200	0.349
		204	0.034
		206	0.429
		212	0.189
19	REN169D01	212	0.218
19	REN169D01	216	0.782
20	REN169O18	162	0.143
		164	0.092
		166	0.366
		168	0.311
		174	0.088
21	REN247M23	268	0.366
		270	0.084
		272	0.080
		274	0.017
		276	0.021
		278	0.433
22	REN54P11	226	0.571
		232	0.013
		234	0.408
		240	0.008
23	REN64E19	139	0.126
		147	0.025
		151	0.101
		153	0.101
		155	0.647
24	VGL0760	13	0.050
		18.2	0.139
		19.2	0.218
		20.2	0.067
		21.2	0.311
		22.2	0.193
		23.2	0.021
25	VGL0910	13	0.122
		17.1	0.130
		19.1	0.214
		20.1	0.357
		21.1	0.168
		22.1	0.008
26	VGL1063	9	0.004
		10	0.046
		12	0.748
		14	0.055
		15	0.097
		18	0.050
27	VGL1165	14	0.042
		15	0.155
		16	0.017
		17	0.084
		19	0.059
		22	0.210
		25	0.214
		28	0.176
		29	0.042
28	VGL1828	15	0.013
		16	0.004
		17	0.084
		19	0.887
		20	0.013
29	VGL2009	11	0.874
		12	0.050
		13	0.017
		14	0.034
		15	0.025
30	VGL2409	15	0.639
		16	0.193
		17	0.101
		18	0.067
31	VGL2918	13	0.130
		14	0.311
		18.3	0.021
		19.3	0.042
		20.3	0.164
		21.3	0.332
32	VGL3008	10	0.017
		14	0.021
		15	0.265
		16	0.130
		17	0.168
		18	0.181
		20	0.055
		21	0.164
33	VGL3235	14	0.521
		15	0.273
		16	0.193
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	119	4.909	2.724	0.586	0.567	-0.029
	SE		0.255	0.209	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	119	4.000	1.982	0.400	0.445	0.074
	SE		0.286	0.218	0.050	0.066	0.029

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	119	6	2.674	0.714	0.626	-0.141
2	AHT137	119	6	1.384	0.244	0.278	0.122
3	AHTH130	119	4	1.819	0.504	0.450	-0.120
4	AHTh171-A	119	4	3.447	0.790	0.710	-0.113
5	AHTh260	119	6	2.571	0.613	0.611	-0.004
6	AHTk211	119	5	2.370	0.622	0.578	-0.076
7	AHTk253	119	3	1.468	0.328	0.319	-0.029
8	C22.279	119	3	2.001	0.555	0.500	-0.108
9	FH2001	119	4	2.065	0.580	0.516	-0.124
10	FH2054	119	6	2.851	0.639	0.649	0.016
11	FH2848	119	5	3.219	0.731	0.689	-0.061
12	INRA21	119	5	3.604	0.697	0.723	0.035
13	INU005	119	3	2.091	0.588	0.522	-0.127
14	INU030	119	4	1.815	0.496	0.449	-0.104
15	INU055	119	4	1.992	0.513	0.498	-0.029
16	LEI004	119	3	1.899	0.521	0.473	-0.100
17	REN105L03	119	5	3.264	0.689	0.694	0.007
18	REN162C04	119	4	2.923	0.714	0.658	-0.086
19	REN169D01	119	2	1.519	0.336	0.342	0.016
20	REN169O18	119	5	3.745	0.748	0.733	-0.020
21	REN247M23	119	6	2.984	0.689	0.665	-0.036
22	REN54P11	119	4	2.029	0.546	0.507	-0.077
23	REN64E19	119	5	2.195	0.521	0.544	0.043
24	VGL0760	119	7	4.796	0.857	0.792	-0.083
25	VGL0910	119	6	4.281	0.765	0.766	0.002
26	VGL1063	119	6	1.735	0.403	0.424	0.048
27	VGL1165	119	9	6.262	0.782	0.840	0.070
28	VGL1828	119	5	1.260	0.176	0.207	0.146
29	VGL2009	119	5	1.301	0.227	0.232	0.020
30	VGL2409	119	4	2.174	0.504	0.540	0.066
31	VGL2918	119	6	3.954	0.773	0.747	-0.035
32	VGL3008	119	8	5.603	0.857	0.822	-0.043
33	VGL3235	119	4	2.607	0.630	0.616	-0.022

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	119	5	1.374	0.277	0.272	-0.019
2	DLA I-4ACA	119	5	2.550	0.521	0.608	0.143
3	DLA I-4BCT	119	4	2.634	0.538	0.620	0.133
4	DLA1131	119	3	2.287	0.496	0.563	0.119
5	5ACA	119	3	1.299	0.227	0.230	0.015
6	5ACT	119	4	2.420	0.496	0.587	0.155
7	5BCA	119	4	1.310	0.244	0.236	-0.031

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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