Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Sep 23, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=148)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.395
1068	380 373 287 181	0.439
1160	386 369 289 176	0.003
1165	392 369 281 182	0.078
1166	388 379 277 184	0.047
1167	397 381 277 184	0.024

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=148)
2017	343 322 280	0.395
2022	339 327 282	0.047
2024	343 323 280	0.003
2026	351 324 284	0.014
2053	343 324 280	0.463
2080	339 325 276	0.078

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=148)
1	AHT121	88	0.010
		92	0.003
		98	0.287
		102	0.520
		104	0.081
		108	0.088
		112	0.010
2	AHT137	131	0.118
		137	0.848
		139	0.017
		147	0.010
		149	0.003
		153	0.003
3	AHTH130	123	0.189
		125	0.051
		127	0.682
		131	0.078
4	AHTh171-A	219	0.105
		221	0.003
		223	0.318
		225	0.186
		233	0.389
5	AHTh260	238	0.220
		242	0.554
		244	0.003
		246	0.149
		248	0.003
		252	0.071
6	AHTk211	87	0.071
		89	0.341
		91	0.034
		93	0.007
		95	0.547
7	AHTk253	286	0.003
		288	0.818
		292	0.179
8	C22.279	116	0.639
		118	0.081
		126	0.280
9	FH2001	124	0.054
		132	0.047
		144	0.645
		148	0.250
		152	0.003
10	FH2054	148	0.037
		152	0.517
		156	0.118
		164	0.051
		168	0.240
		176	0.037
11	FH2848	232	0.061
		234	0.037
		238	0.338
		240	0.399
		242	0.166
12	INRA21	91	0.003
		93	0.003
		95	0.203
		97	0.139
		99	0.284
		101	0.368
13	INU005	124	0.365
		126	0.595
		132	0.041
14	INU030	146	0.057
		148	0.064
		150	0.726
		152	0.152
15	INU055	210	0.669
		214	0.034
		218	0.213
		220	0.084
16	LEI004	85	0.598
		95	0.399
		107	0.003
17	REN105L03	227	0.088
		231	0.095
		233	0.091
		235	0.243
		241	0.483
18	REN162C04	200	0.351
		202	0.003
		204	0.030
		206	0.432
		212	0.182
19	REN169D01	212	0.206
		216	0.791
		220	0.003
20	REN169O18	162	0.159
		164	0.084
		166	0.351
		168	0.311
		174	0.095
21	REN247M23	268	0.341
		270	0.098
		272	0.088
		274	0.014
		276	0.024
		278	0.436
22	REN54P11	226	0.557
		232	0.014
		234	0.419
		238	0.003
		240	0.007
23	REN64E19	139	0.122
		147	0.020
		151	0.101
		153	0.111
		155	0.645
24	VGL0760	13	0.057
		18.2	0.132
		19.2	0.213
		20.2	0.061
		21.2	0.304
		22.2	0.206
		23.2	0.024
		24.2	0.003
25	VGL0910	13	0.115
		17.1	0.125
		19.1	0.220
		20.1	0.355
		21.1	0.176
		22.1	0.010
26	VGL1063	9	0.003
		10	0.041
		12	0.757
		13	0.003
		14	0.044
		15	0.091
		18	0.061
27	VGL1165	14	0.037
		15	0.169
		16	0.014
		17	0.074
		19	0.064
		21	0.003
		22	0.203
		23	0.003
		25	0.206
		28	0.186
		29	0.041
28	VGL1828	15	0.010
		16	0.003
		17	0.098
		19	0.875
		20	0.014
29	VGL2009	9	0.003
		11	0.875
		12	0.047
		13	0.014
		14	0.041
		15	0.020
30	VGL2409	15	0.652
		16	0.189
		17	0.091
		18	0.068
31	VGL2918	13	0.142
		14	0.311
		18.3	0.017
		19.3	0.044
		20.3	0.155
		21.3	0.324
		22.3	0.007
32	VGL3008	10	0.017
		14	0.017
		15	0.274
		16	0.111
		17	0.182
		18	0.176
		20	0.057
		21	0.162
		22	0.003
33	VGL3235	14	0.557
		15	0.253
		16	0.176
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	148	5.333	2.728	0.578	0.567	-0.014
	SE		0.305	0.209	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	148	4.286	2.056	0.416	0.461	0.066
	SE		0.265	0.234	0.048	0.066	0.033

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	148	7	2.720	0.709	0.632	-0.122
2	AHT137	148	6	1.363	0.236	0.267	0.113
3	AHTH130	148	4	1.960	0.527	0.490	-0.076
4	AHTh171-A	148	5	3.364	0.743	0.703	-0.058
5	AHTh260	148	6	2.615	0.622	0.618	-0.006
6	AHTk211	148	5	2.369	0.595	0.578	-0.029
7	AHTk253	148	3	1.428	0.297	0.300	0.007
8	C22.279	148	3	2.029	0.534	0.507	-0.053
9	FH2001	148	5	2.066	0.541	0.516	-0.048
10	FH2054	148	6	2.907	0.649	0.656	0.011
11	FH2848	148	5	3.273	0.723	0.694	-0.041
12	INRA21	148	6	3.618	0.689	0.724	0.048
13	INU005	148	3	2.048	0.561	0.512	-0.096
14	INU030	148	4	1.792	0.493	0.442	-0.116
15	INU055	148	4	1.996	0.473	0.499	0.052
16	LEI004	148	3	1.936	0.534	0.483	-0.104
17	REN105L03	148	5	3.149	0.655	0.682	0.040
18	REN162C04	148	5	2.901	0.703	0.655	-0.072
19	REN169D01	148	3	1.498	0.318	0.333	0.045
20	REN169O18	148	5	3.826	0.757	0.739	-0.025
21	REN247M23	148	6	3.082	0.696	0.676	-0.030
22	REN54P11	148	5	2.056	0.554	0.514	-0.079
23	REN64E19	148	5	2.201	0.520	0.546	0.047
24	VGL0760	148	8	4.875	0.851	0.795	-0.071
25	VGL0910	148	6	4.276	0.770	0.766	-0.005
26	VGL1063	148	7	1.700	0.392	0.412	0.048
27	VGL1165	148	11	6.270	0.791	0.841	0.059
28	VGL1828	148	5	1.289	0.209	0.224	0.067
29	VGL2009	148	6	1.299	0.216	0.230	0.059
30	VGL2409	148	4	2.111	0.500	0.526	0.050
31	VGL2918	148	7	4.027	0.757	0.752	-0.007
32	VGL3008	148	9	5.506	0.865	0.818	-0.057
33	VGL3235	148	4	2.463	0.601	0.594	-0.012

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	148	5	1.418	0.297	0.295	-0.009
2	DLA I-4ACA	148	5	2.699	0.541	0.629	0.141
3	DLA I-4BCT	148	4	2.740	0.547	0.635	0.138
4	DLA1131	148	4	2.331	0.493	0.571	0.136
5	5ACA	148	3	1.319	0.250	0.242	-0.033
6	5ACT	148	5	2.555	0.520	0.609	0.145
7	5BCA	148	4	1.332	0.264	0.249	-0.057

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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