Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Jun 21, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=139)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.399
1068	380 373 287 181	0.439
1160	386 369 289 176	0.004
1165	392 369 281 182	0.076
1166	388 379 277 184	0.047
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=139)
2017	343 322 280	0.399
2022	339 327 282	0.047
2024	343 323 280	0.004
2026	351 324 284	0.014
2053	343 324 280	0.460
2080	339 325 276	0.076

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=139)
1	AHT121	88	0.011
		92	0.004
		98	0.302
		102	0.511
		104	0.083
		108	0.083
		112	0.007
2	AHT137	131	0.122
		137	0.845
		139	0.018
		147	0.007
		149	0.004
		153	0.004
3	AHTH130	123	0.176
		125	0.050
		127	0.691
		131	0.083
4	AHTh171-A	219	0.108
		221	0.004
		223	0.331
		225	0.176
		233	0.381
5	AHTh260	238	0.230
		242	0.547
		244	0.004
		246	0.147
		248	0.004
		252	0.068
6	AHTk211	87	0.068
		89	0.349
		91	0.032
		93	0.007
		95	0.543
7	AHTk253	286	0.004
		288	0.817
		292	0.180
8	C22.279	116	0.626
		118	0.083
		126	0.291
9	FH2001	124	0.058
		132	0.047
		144	0.633
		148	0.259
		152	0.004
10	FH2054	148	0.032
		152	0.511
		156	0.122
		164	0.050
		168	0.248
		176	0.036
11	FH2848	232	0.065
		234	0.036
		238	0.345
		240	0.388
		242	0.165
12	INRA21	91	0.004
		95	0.209
		97	0.140
		99	0.288
		101	0.360
13	INU005	124	0.371
		126	0.586
		132	0.043
14	INU030	146	0.058
		148	0.061
		150	0.723
		152	0.158
15	INU055	210	0.683
		214	0.032
		218	0.194
		220	0.090
16	LEI004	85	0.612
		95	0.385
		107	0.004
17	REN105L03	227	0.090
		231	0.097
		233	0.090
		235	0.248
		241	0.475
18	REN162C04	200	0.353
		202	0.004
		204	0.032
		206	0.428
		212	0.183
19	REN169D01	212	0.209
		216	0.788
		220	0.004
20	REN169O18	162	0.155
		164	0.086
		166	0.360
		168	0.299
		174	0.101
21	REN247M23	268	0.342
		270	0.101
		272	0.086
		274	0.014
		276	0.022
		278	0.435
22	REN54P11	226	0.558
		232	0.014
		234	0.417
		238	0.004
		240	0.007
23	REN64E19	139	0.122
		147	0.022
		151	0.101
		153	0.112
		155	0.644
24	VGL0760	13	0.058
		18.2	0.137
		19.2	0.212
		20.2	0.065
		21.2	0.309
		22.2	0.198
		23.2	0.018
		24.2	0.004
25	VGL0910	13	0.119
		17.1	0.126
		19.1	0.223
		20.1	0.349
		21.1	0.173
		22.1	0.011
26	VGL1063	9	0.004
		10	0.043
		12	0.755
		13	0.004
		14	0.047
		15	0.097
		18	0.050
27	VGL1165	14	0.040
		15	0.165
		16	0.014
		17	0.072
		19	0.058
		21	0.004
		22	0.212
		23	0.004
		25	0.212
		28	0.176
		29	0.043
28	VGL1828	15	0.011
		16	0.004
		17	0.097
		19	0.874
		20	0.014
29	VGL2009	9	0.004
		11	0.874
		12	0.043
		13	0.014
		14	0.043
		15	0.022
30	VGL2409	15	0.640
		16	0.198
		17	0.094
		18	0.068
31	VGL2918	13	0.144
		14	0.309
		18.3	0.018
		19.3	0.040
		20.3	0.155
		21.3	0.327
		22.3	0.007
32	VGL3008	10	0.018
		14	0.018
		15	0.273
		16	0.119
		17	0.176
		18	0.176
		20	0.061
		21	0.155
		22	0.004
33	VGL3235	14	0.547
		15	0.259
		16	0.180
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	139	5.303	2.738	0.583	0.569	-0.021
	SE		0.304	0.209	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	139	4.286	2.045	0.419	0.459	0.057
	SE		0.265	0.232	0.051	0.066	0.029

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	139	7	2.732	0.727	0.634	-0.146
2	AHT137	139	6	1.370	0.237	0.270	0.121
3	AHTH130	139	4	1.933	0.525	0.483	-0.088
4	AHTh171-A	139	5	3.360	0.763	0.702	-0.086
5	AHTh260	139	6	2.643	0.626	0.622	-0.007
6	AHTk211	139	5	2.367	0.590	0.577	-0.022
7	AHTk253	139	3	1.430	0.309	0.301	-0.028
8	C22.279	139	3	2.068	0.547	0.517	-0.059
9	FH2001	139	5	2.112	0.554	0.527	-0.052
10	FH2054	139	6	2.921	0.655	0.658	0.005
11	FH2848	139	5	3.300	0.727	0.697	-0.043
12	INRA21	139	5	3.631	0.683	0.725	0.057
13	INU005	139	3	2.071	0.576	0.517	-0.113
14	INU030	139	4	1.802	0.496	0.445	-0.115
15	INU055	139	4	1.946	0.489	0.486	-0.007
16	LEI004	139	3	1.915	0.518	0.478	-0.084
17	REN105L03	139	5	3.198	0.662	0.687	0.037
18	REN162C04	139	5	2.922	0.712	0.658	-0.083
19	REN169D01	139	3	1.506	0.317	0.336	0.058
20	REN169O18	139	5	3.845	0.763	0.740	-0.031
21	REN247M23	139	6	3.082	0.698	0.676	-0.033
22	REN54P11	139	5	2.061	0.547	0.515	-0.062
23	REN64E19	139	5	2.210	0.518	0.547	0.054
24	VGL0760	139	8	4.845	0.871	0.794	-0.097
25	VGL0910	139	6	4.322	0.755	0.769	0.017
26	VGL1063	139	7	1.705	0.403	0.413	0.025
27	VGL1165	139	11	6.224	0.784	0.839	0.066
28	VGL1828	139	5	1.292	0.209	0.226	0.078
29	VGL2009	139	6	1.301	0.230	0.232	0.006
30	VGL2409	139	4	2.162	0.511	0.537	0.050
31	VGL2918	139	7	4.009	0.777	0.751	-0.035
32	VGL3008	139	9	5.578	0.863	0.821	-0.052
33	VGL3235	139	4	2.509	0.612	0.601	-0.017

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	139	5	1.406	0.295	0.289	-0.021
2	DLA I-4ACA	139	5	2.675	0.547	0.626	0.127
3	DLA I-4BCT	139	4	2.721	0.561	0.633	0.113
4	DLA1131	139	4	2.322	0.504	0.569	0.115
5	5ACA	139	3	1.315	0.245	0.240	-0.021
6	5ACT	139	5	2.546	0.525	0.607	0.135
7	5BCA	139	4	1.327	0.259	0.247	-0.050

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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