Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Nov 5, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=121)
1035	386 373 277 184	0.017
1052	380 372 289 184	0.368
1068	380 373 287 181	0.483
1165	392 369 281 182	0.070
1166	388 379 277 184	0.041
1167	397 381 277 184	0.021

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=121)
2017	343 322 280	0.368
2022	339 327 282	0.041
2026	351 324 284	0.017
2053	343 324 280	0.504
2080	339 325 276	0.070

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=122)
1	AHT121	88	0.012
		98	0.283
		102	0.525
		104	0.086
		108	0.086
		112	0.008
2	AHT137	131	0.123
		137	0.844
		139	0.016
		147	0.008
		149	0.004
		153	0.004
3	AHTH130	123	0.168
		125	0.045
		127	0.705
		131	0.082
4	AHTh171-A	219	0.115
		223	0.357
		225	0.193
		233	0.336
5	AHTh260	238	0.225
		242	0.557
		244	0.004
		246	0.143
		248	0.004
		252	0.066
6	AHTk211	87	0.066
		89	0.361
		91	0.033
		93	0.008
		95	0.533
7	AHTk253	286	0.004
		288	0.807
		292	0.189
8	C22.279	116	0.652
		118	0.078
		126	0.270
9	FH2001	124	0.061
		132	0.037
		144	0.639
		148	0.262
10	FH2054	148	0.033
		152	0.520
		156	0.119
		164	0.045
		168	0.242
		176	0.041
11	FH2848	232	0.061
		234	0.041
		238	0.340
		240	0.406
		242	0.152
12	INRA21	91	0.004
		95	0.209
		97	0.139
		99	0.287
		101	0.361
13	INU005	124	0.369
		126	0.586
		132	0.045
14	INU030	146	0.053
		148	0.057
		150	0.725
		152	0.164
15	INU055	210	0.672
		214	0.029
		218	0.201
		220	0.098
16	LEI004	85	0.627
		95	0.369
		107	0.004
17	REN105L03	227	0.098
		231	0.098
		233	0.082
		235	0.250
		241	0.471
18	REN162C04	200	0.352
		204	0.033
		206	0.426
		212	0.189
19	REN169D01	212	0.213
19	REN169D01	216	0.787
20	REN169O18	162	0.148
		164	0.094
		166	0.361
		168	0.307
		174	0.090
21	REN247M23	268	0.365
		270	0.082
		272	0.082
		274	0.016
		276	0.025
		278	0.430
22	REN54P11	226	0.582
		232	0.012
		234	0.398
		240	0.008
23	REN64E19	139	0.123
		147	0.025
		151	0.102
		153	0.102
		155	0.648
24	VGL0760	13	0.049
		18.2	0.143
		19.2	0.221
		20.2	0.066
		21.2	0.303
		22.2	0.197
		23.2	0.020
25	VGL0910	13	0.119
		17.1	0.131
		19.1	0.209
		20.1	0.357
		21.1	0.176
		22.1	0.008
26	VGL1063	9	0.004
		10	0.045
		12	0.754
		14	0.053
		15	0.094
		18	0.049
27	VGL1165	14	0.041
		15	0.156
		16	0.016
		17	0.082
		19	0.066
		22	0.205
		25	0.221
		28	0.172
		29	0.041
28	VGL1828	15	0.012
		16	0.004
		17	0.086
		19	0.885
		20	0.012
29	VGL2009	11	0.873
		12	0.049
		13	0.016
		14	0.037
		15	0.025
30	VGL2409	15	0.639
		16	0.197
		17	0.098
		18	0.066
31	VGL2918	13	0.131
		14	0.311
		18.3	0.020
		19.3	0.041
		20.3	0.164
		21.3	0.332
32	VGL3008	10	0.016
		14	0.020
		15	0.266
		16	0.127
		17	0.172
		18	0.176
		20	0.061
		21	0.160
33	VGL3235	14	0.525
		15	0.270
		16	0.193
		17	0.012

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	122	4.909	2.727	0.585	0.567	-0.028
	SE		0.255	0.210	0.031	0.029	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	122	4.000	1.978	0.395	0.443	0.079
	SE		0.286	0.219	0.050	0.066	0.030

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	122	6	2.701	0.713	0.630	-0.132
2	AHT137	122	6	1.373	0.238	0.272	0.125
3	AHTH130	122	4	1.873	0.516	0.466	-0.108
4	AHTh171-A	122	4	3.444	0.795	0.710	-0.120
5	AHTh260	122	6	2.588	0.615	0.614	-0.002
6	AHTk211	122	5	2.384	0.623	0.581	-0.073
7	AHTk253	122	3	1.455	0.320	0.313	-0.023
8	C22.279	122	3	1.985	0.549	0.496	-0.107
9	FH2001	122	4	2.072	0.574	0.517	-0.109
10	FH2054	122	6	2.871	0.648	0.652	0.006
11	FH2848	122	5	3.238	0.730	0.691	-0.055
12	INRA21	122	5	3.630	0.697	0.725	0.038
13	INU005	122	3	2.077	0.582	0.518	-0.123
14	INU030	122	4	1.788	0.484	0.441	-0.097
15	INU055	122	4	1.990	0.516	0.497	-0.038
16	LEI004	122	3	1.889	0.516	0.471	-0.097
17	REN105L03	122	5	3.219	0.689	0.689	0.001
18	REN162C04	122	4	2.920	0.713	0.657	-0.085
19	REN169D01	122	2	1.505	0.328	0.335	0.022
20	REN169O18	122	5	3.797	0.754	0.737	-0.024
21	REN247M23	122	6	3.007	0.697	0.667	-0.044
22	REN54P11	122	4	2.012	0.533	0.503	-0.059
23	REN64E19	122	5	2.193	0.525	0.544	0.036
24	VGL0760	122	7	4.822	0.861	0.793	-0.086
25	VGL0910	122	6	4.287	0.762	0.767	0.006
26	VGL1063	122	6	1.710	0.393	0.415	0.052
27	VGL1165	122	9	6.270	0.770	0.840	0.083
28	VGL1828	122	5	1.264	0.180	0.209	0.136
29	VGL2009	122	5	1.304	0.230	0.233	0.016
30	VGL2409	122	4	2.167	0.508	0.539	0.056
31	VGL2918	122	6	3.946	0.779	0.747	-0.043
32	VGL3008	122	8	5.624	0.852	0.822	-0.037
33	VGL3235	122	4	2.593	0.631	0.614	-0.027

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	122	5	1.363	0.270	0.266	-0.017
2	DLA I-4ACA	122	5	2.551	0.516	0.608	0.151
3	DLA I-4BCT	122	4	2.632	0.533	0.620	0.141
4	DLA1131	122	3	2.283	0.492	0.562	0.125
5	5ACA	122	3	1.291	0.221	0.225	0.018
6	5ACT	122	4	2.425	0.492	0.588	0.163
7	5BCA	122	4	1.304	0.240	0.233	-0.029

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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