Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Aug 3, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=143)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.388
1068	380 373 287 181	0.444
1160	386 369 289 176	0.003
1165	392 369 281 182	0.077
1166	388 379 277 184	0.049
1167	397 381 277 184	0.024

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=143)
2017	343 322 280	0.388
2022	339 327 282	0.049
2024	343 323 280	0.003
2026	351 324 284	0.014
2053	343 324 280	0.469
2080	339 325 276	0.077

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=143)
1	AHT121	88	0.010
		92	0.003
		98	0.294
		102	0.517
		104	0.084
		108	0.084
		112	0.007
2	AHT137	131	0.119
		137	0.850
		139	0.017
		147	0.007
		149	0.003
		153	0.003
3	AHTH130	123	0.185
		125	0.052
		127	0.682
		131	0.080
4	AHTh171-A	219	0.108
		221	0.003
		223	0.325
		225	0.182
		233	0.381
5	AHTh260	238	0.224
		242	0.552
		244	0.003
		246	0.147
		248	0.003
		252	0.070
6	AHTk211	87	0.066
		89	0.346
		91	0.031
		93	0.007
		95	0.549
7	AHTk253	286	0.003
		288	0.818
		292	0.178
8	C22.279	116	0.629
		118	0.084
		126	0.287
9	FH2001	124	0.056
		132	0.049
		144	0.633
		148	0.259
		152	0.003
10	FH2054	148	0.035
		152	0.517
		156	0.119
		164	0.049
		168	0.241
		176	0.038
11	FH2848	232	0.063
		234	0.038
		238	0.343
		240	0.392
		242	0.164
12	INRA21	91	0.003
		95	0.203
		97	0.140
		99	0.283
		101	0.371
13	INU005	124	0.360
		126	0.598
		132	0.042
14	INU030	146	0.056
		148	0.059
		150	0.727
		152	0.157
15	INU055	210	0.678
		214	0.035
		218	0.199
		220	0.087
16	LEI004	85	0.608
		95	0.388
		107	0.003
17	REN105L03	227	0.091
		231	0.094
		233	0.091
		235	0.248
		241	0.476
18	REN162C04	200	0.353
		202	0.003
		204	0.031
		206	0.430
		212	0.182
19	REN169D01	212	0.206
		216	0.790
		220	0.003
20	REN169O18	162	0.157
		164	0.087
		166	0.357
		168	0.301
		174	0.098
21	REN247M23	268	0.339
		270	0.098
		272	0.091
		274	0.014
		276	0.024
		278	0.434
22	REN54P11	226	0.556
		232	0.014
		234	0.420
		238	0.003
		240	0.007
23	REN64E19	139	0.126
		147	0.021
		151	0.101
		153	0.112
		155	0.640
24	VGL0760	13	0.056
		18.2	0.136
		19.2	0.213
		20.2	0.063
		21.2	0.304
		22.2	0.203
		23.2	0.021
		24.2	0.003
25	VGL0910	13	0.115
		17.1	0.126
		19.1	0.224
		20.1	0.353
		21.1	0.171
		22.1	0.010
26	VGL1063	9	0.003
		10	0.042
		12	0.759
		13	0.003
		14	0.045
		15	0.094
		18	0.052
27	VGL1165	14	0.038
		15	0.164
		16	0.014
		17	0.073
		19	0.063
		21	0.003
		22	0.206
		23	0.003
		25	0.210
		28	0.182
		29	0.042
28	VGL1828	15	0.010
		16	0.003
		17	0.098
		19	0.874
		20	0.014
29	VGL2009	9	0.003
		11	0.871
		12	0.049
		13	0.014
		14	0.042
		15	0.021
30	VGL2409	15	0.643
		16	0.192
		17	0.094
		18	0.070
31	VGL2918	13	0.140
		14	0.311
		18.3	0.017
		19.3	0.045
		20.3	0.157
		21.3	0.322
		22.3	0.007
32	VGL3008	10	0.017
		14	0.017
		15	0.273
		16	0.115
		17	0.182
		18	0.175
		20	0.059
		21	0.157
		22	0.003
33	VGL3235	14	0.545
		15	0.262
		16	0.178
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	143	5.303	2.737	0.582	0.569	-0.019
	SE		0.304	0.210	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	143	4.286	2.059	0.420	0.463	0.063
	SE		0.265	0.233	0.049	0.066	0.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	143	7	2.715	0.720	0.632	-0.140
2	AHT137	143	6	1.358	0.231	0.264	0.124
3	AHTH130	143	4	1.967	0.524	0.492	-0.067
4	AHTh171-A	143	5	3.381	0.755	0.704	-0.072
5	AHTh260	143	6	2.619	0.622	0.618	-0.007
6	AHTk211	143	5	2.344	0.587	0.573	-0.024
7	AHTk253	143	3	1.426	0.308	0.299	-0.030
8	C22.279	143	3	2.060	0.545	0.515	-0.060
9	FH2001	143	5	2.114	0.559	0.527	-0.062
10	FH2054	143	6	2.897	0.643	0.655	0.017
11	FH2848	143	5	3.298	0.727	0.697	-0.044
12	INRA21	143	5	3.594	0.678	0.722	0.060
13	INU005	143	3	2.045	0.559	0.511	-0.095
14	INU030	143	4	1.785	0.490	0.440	-0.113
15	INU055	143	4	1.966	0.490	0.491	0.004
16	LEI004	143	3	1.920	0.531	0.479	-0.109
17	REN105L03	143	5	3.193	0.664	0.687	0.033
18	REN162C04	143	5	2.909	0.706	0.656	-0.076
19	REN169D01	143	3	1.499	0.315	0.333	0.055
20	REN169O18	143	5	3.852	0.762	0.740	-0.029
21	REN247M23	143	6	3.109	0.699	0.678	-0.031
22	REN54P11	143	5	2.060	0.559	0.515	-0.087
23	REN64E19	143	5	2.230	0.524	0.551	0.049
24	VGL0760	143	8	4.871	0.867	0.795	-0.091
25	VGL0910	143	6	4.284	0.762	0.767	0.006
26	VGL1063	143	7	1.691	0.399	0.409	0.025
27	VGL1165	143	11	6.272	0.790	0.841	0.060
28	VGL1828	143	5	1.292	0.210	0.226	0.072
29	VGL2009	143	6	1.311	0.224	0.237	0.057
30	VGL2409	143	4	2.152	0.510	0.535	0.046
31	VGL2918	143	7	4.048	0.769	0.753	-0.022
32	VGL3008	143	9	5.549	0.867	0.820	-0.058
33	VGL3235	143	4	2.511	0.615	0.602	-0.023

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	143	5	1.425	0.301	0.298	-0.008
2	DLA I-4ACA	143	5	2.703	0.545	0.630	0.134
3	DLA I-4BCT	143	4	2.746	0.552	0.636	0.131
4	DLA1131	143	4	2.330	0.497	0.571	0.130
5	5ACA	143	3	1.323	0.252	0.244	-0.031
6	5ACT	143	5	2.552	0.524	0.608	0.138
7	5BCA	143	4	1.336	0.266	0.252	-0.056

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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