Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Oct 4, 2023

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiloh Shepherd (n=68)
1052380 372 289 1840.309
1068380 373 287 1810.522
1165392 369 281 1820.103
1166388 379 277 1840.044
1167397 381 277 1840.022

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiloh Shepherd (n=68)
2017343 322 2800.309
2022339 327 2820.044
2053343 324 2800.544
2080339 325 2760.103

Allele Frequencies

#Locus NameAlleleShiloh Shepherd (n=68)
1AHT121 880.022
980.301
1020.529
1040.037
1080.096
1120.015
2AHT137 1310.110
1370.875
1390.007
1530.007
3AHTH130 1230.184
1250.051
1270.662
1310.103
4AHTh171-A 2190.132
2230.338
2250.191
2330.338
5AHTh260 2380.250
2420.581
2460.132
2520.037
6AHTk211 870.044
890.346
910.037
930.007
950.566
7AHTk253 2880.801
2920.199
8C22.279 1160.596
1180.096
1260.309
9FH2001 1240.081
1320.051
1440.647
1480.221
10FH2054 1480.029
1520.507
1560.154
1640.059
1680.213
1760.037
11FH2848 2320.074
2340.044
2380.338
2400.412
2420.132
12INRA21 910.007
950.301
970.162
990.213
1010.316
13INU005 1240.375
1260.544
1320.081
14INU030 1460.081
1480.081
1500.669
1520.169
15INU055 2100.662
2140.029
2180.199
2200.110
16LEI004 850.647
950.346
1070.007
17REN105L03 2270.103
2310.081
2330.074
2350.243
2410.500
18REN162C04 2000.397
2040.022
2060.382
2120.199
19REN169D01 2120.140
2160.860
20REN169O18 1620.103
1640.096
1660.404
1680.301
1740.096
21REN247M23 2680.382
2700.096
2720.044
2760.022
2780.456
22REN54P11 2260.574
2320.015
2340.397
2400.015
23REN64E19 1390.125
1470.037
1510.051
1530.110
1550.676
24VGL0760 130.044
18.20.154
19.20.176
20.20.044
21.20.346
22.20.206
23.20.029
25VGL0910 130.140
17.10.140
19.10.176
20.10.390
21.10.147
22.10.007
26VGL1063 90.007
100.051
120.794
140.037
150.051
180.059
27VGL1165 140.066
150.176
160.029
170.029
190.074
220.213
250.176
280.176
290.059
28VGL1828 150.015
160.007
170.096
190.860
200.022
29VGL2009 110.875
120.044
140.037
150.044
30VGL2409 150.625
160.169
170.125
180.081
31VGL2918 130.169
140.353
20.30.176
21.30.301
32VGL3008 100.007
140.015
150.221
160.103
170.228
180.169
200.074
210.184
33VGL3235 140.537
150.257
160.184
170.022

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

  NNaNeHoHeF
Mean684.6362.7000.5940.564-0.045
 SE 0.2560.2070.0330.0300.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

  NNaNeHoHeF
Mean683.5712.0260.4290.4590.038
 SE 0.3410.2170.0480.0630.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#LocusNNaNeHoHeF
1AHT1216862.6150.6910.618-0.119
2AHT1376841.2860.2210.2220.007
3AHTH1306842.0620.5880.515-0.142
4AHTh171-A6843.5350.8240.717-0.148
5AHTh2606842.3880.6320.581-0.088
6AHTk2116852.2560.6320.557-0.136
7AHTk2536821.4670.3090.3180.030
8C22.2796832.1780.6030.541-0.115
9FH20016842.0980.5740.523-0.096
10FH20546863.0080.6910.668-0.035
11FH28486853.2380.7210.691-0.043
12INRA216853.8090.7500.737-0.017
13INU0056832.2560.6470.557-0.162
14INU0306842.0430.5590.511-0.094
15INU0556842.0390.5000.5100.019
16LEI0046831.8580.4710.462-0.019
17REN105L036853.0170.6620.6690.010
18REN162C046842.9090.7350.656-0.120
19REN169D016821.3160.2500.240-0.040
20REN169O186853.5300.8090.717-0.129
21REN247M236852.7350.6620.634-0.043
22REN54P116842.0530.5590.513-0.089
23REN64E196852.0430.5150.511-0.008
24VGL07606874.5130.8240.778-0.058
25VGL09106864.1030.7650.756-0.011
26VGL10636861.5610.3240.3590.099
27VGL11656896.4990.8240.8460.027
28VGL18286851.3330.2060.2500.176
29VGL20096841.2970.2060.2290.101
30VGL24096842.2660.5880.559-0.053
31VGL29186843.6340.7650.725-0.055
32VGL30086885.5780.8530.821-0.039
33VGL32356842.5730.6620.611-0.082

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#LocusNNaNeHoHeF
1DLA I-3CCA6841.4220.3090.297-0.041
2DLA I-4ACA6852.6250.5590.6190.097
3DLA I-4BCT6842.6120.5440.6170.118
4DLA11316832.3600.5150.5760.107
55ACA6821.3350.2650.251-0.055
65ACT6842.4750.5290.5960.112
75BCA6831.3510.2790.260-0.075