Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Oct 4, 2023

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=68)
1052	380 372 289 184	0.309
1068	380 373 287 181	0.522
1165	392 369 281 182	0.103
1166	388 379 277 184	0.044
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=68)
2017	343 322 280	0.309
2022	339 327 282	0.044
2053	343 324 280	0.544
2080	339 325 276	0.103

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=68)
1	AHT121	88	0.022
		98	0.301
		102	0.529
		104	0.037
		108	0.096
		112	0.015
2	AHT137	131	0.110
		137	0.875
		139	0.007
		153	0.007
3	AHTH130	123	0.184
		125	0.051
		127	0.662
		131	0.103
4	AHTh171-A	219	0.132
		223	0.338
		225	0.191
		233	0.338
5	AHTh260	238	0.250
		242	0.581
		246	0.132
		252	0.037
6	AHTk211	87	0.044
		89	0.346
		91	0.037
		93	0.007
		95	0.566
7	AHTk253	288	0.801
7	AHTk253	292	0.199
8	C22.279	116	0.596
		118	0.096
		126	0.309
9	FH2001	124	0.081
		132	0.051
		144	0.647
		148	0.221
10	FH2054	148	0.029
		152	0.507
		156	0.154
		164	0.059
		168	0.213
		176	0.037
11	FH2848	232	0.074
		234	0.044
		238	0.338
		240	0.412
		242	0.132
12	INRA21	91	0.007
		95	0.301
		97	0.162
		99	0.213
		101	0.316
13	INU005	124	0.375
		126	0.544
		132	0.081
14	INU030	146	0.081
		148	0.081
		150	0.669
		152	0.169
15	INU055	210	0.662
		214	0.029
		218	0.199
		220	0.110
16	LEI004	85	0.647
		95	0.346
		107	0.007
17	REN105L03	227	0.103
		231	0.081
		233	0.074
		235	0.243
		241	0.500
18	REN162C04	200	0.397
		204	0.022
		206	0.382
		212	0.199
19	REN169D01	212	0.140
19	REN169D01	216	0.860
20	REN169O18	162	0.103
		164	0.096
		166	0.404
		168	0.301
		174	0.096
21	REN247M23	268	0.382
		270	0.096
		272	0.044
		276	0.022
		278	0.456
22	REN54P11	226	0.574
		232	0.015
		234	0.397
		240	0.015
23	REN64E19	139	0.125
		147	0.037
		151	0.051
		153	0.110
		155	0.676
24	VGL0760	13	0.044
		18.2	0.154
		19.2	0.176
		20.2	0.044
		21.2	0.346
		22.2	0.206
		23.2	0.029
25	VGL0910	13	0.140
		17.1	0.140
		19.1	0.176
		20.1	0.390
		21.1	0.147
		22.1	0.007
26	VGL1063	9	0.007
		10	0.051
		12	0.794
		14	0.037
		15	0.051
		18	0.059
27	VGL1165	14	0.066
		15	0.176
		16	0.029
		17	0.029
		19	0.074
		22	0.213
		25	0.176
		28	0.176
		29	0.059
28	VGL1828	15	0.015
		16	0.007
		17	0.096
		19	0.860
		20	0.022
29	VGL2009	11	0.875
		12	0.044
		14	0.037
		15	0.044
30	VGL2409	15	0.625
		16	0.169
		17	0.125
		18	0.081
31	VGL2918	13	0.169
		14	0.353
		20.3	0.176
		21.3	0.301
32	VGL3008	10	0.007
		14	0.015
		15	0.221
		16	0.103
		17	0.228
		18	0.169
		20	0.074
		21	0.184
33	VGL3235	14	0.537
		15	0.257
		16	0.184
		17	0.022

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	68	4.636	2.700	0.594	0.564	-0.045
	SE		0.256	0.207	0.033	0.030	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	68	3.571	2.026	0.429	0.459	0.038
	SE		0.341	0.217	0.048	0.063	0.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	68	6	2.615	0.691	0.618	-0.119
2	AHT137	68	4	1.286	0.221	0.222	0.007
3	AHTH130	68	4	2.062	0.588	0.515	-0.142
4	AHTh171-A	68	4	3.535	0.824	0.717	-0.148
5	AHTh260	68	4	2.388	0.632	0.581	-0.088
6	AHTk211	68	5	2.256	0.632	0.557	-0.136
7	AHTk253	68	2	1.467	0.309	0.318	0.030
8	C22.279	68	3	2.178	0.603	0.541	-0.115
9	FH2001	68	4	2.098	0.574	0.523	-0.096
10	FH2054	68	6	3.008	0.691	0.668	-0.035
11	FH2848	68	5	3.238	0.721	0.691	-0.043
12	INRA21	68	5	3.809	0.750	0.737	-0.017
13	INU005	68	3	2.256	0.647	0.557	-0.162
14	INU030	68	4	2.043	0.559	0.511	-0.094
15	INU055	68	4	2.039	0.500	0.510	0.019
16	LEI004	68	3	1.858	0.471	0.462	-0.019
17	REN105L03	68	5	3.017	0.662	0.669	0.010
18	REN162C04	68	4	2.909	0.735	0.656	-0.120
19	REN169D01	68	2	1.316	0.250	0.240	-0.040
20	REN169O18	68	5	3.530	0.809	0.717	-0.129
21	REN247M23	68	5	2.735	0.662	0.634	-0.043
22	REN54P11	68	4	2.053	0.559	0.513	-0.089
23	REN64E19	68	5	2.043	0.515	0.511	-0.008
24	VGL0760	68	7	4.513	0.824	0.778	-0.058
25	VGL0910	68	6	4.103	0.765	0.756	-0.011
26	VGL1063	68	6	1.561	0.324	0.359	0.099
27	VGL1165	68	9	6.499	0.824	0.846	0.027
28	VGL1828	68	5	1.333	0.206	0.250	0.176
29	VGL2009	68	4	1.297	0.206	0.229	0.101
30	VGL2409	68	4	2.266	0.588	0.559	-0.053
31	VGL2918	68	4	3.634	0.765	0.725	-0.055
32	VGL3008	68	8	5.578	0.853	0.821	-0.039
33	VGL3235	68	4	2.573	0.662	0.611	-0.082

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	68	4	1.422	0.309	0.297	-0.041
2	DLA I-4ACA	68	5	2.625	0.559	0.619	0.097
3	DLA I-4BCT	68	4	2.612	0.544	0.617	0.118
4	DLA1131	68	3	2.360	0.515	0.576	0.107
5	5ACA	68	2	1.335	0.265	0.251	-0.055
6	5ACT	68	4	2.475	0.529	0.596	0.112
7	5BCA	68	3	1.351	0.279	0.260	-0.075

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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