Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Nov 12, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=111)
1035	386 373 277 184	0.018
1052	380 372 289 184	0.360
1068	380 373 287 181	0.482
1165	392 369 281 182	0.077
1166	388 379 277 184	0.041
1167	397 381 277 184	0.023

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=111)
2017	343 322 280	0.360
2022	339 327 282	0.041
2026	351 324 284	0.018
2053	343 324 280	0.505
2080	339 325 276	0.077

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=111)
1	AHT121	88	0.014
		98	0.284
		102	0.527
		104	0.081
		108	0.086
		112	0.009
2	AHT137	131	0.131
		137	0.833
		139	0.018
		147	0.009
		149	0.005
		153	0.005
3	AHTH130	123	0.167
		125	0.045
		127	0.707
		131	0.081
4	AHTh171-A	219	0.113
		223	0.351
		225	0.198
		233	0.338
5	AHTh260	238	0.212
		242	0.572
		244	0.005
		246	0.140
		248	0.005
		252	0.068
6	AHTk211	87	0.063
		89	0.369
		91	0.032
		93	0.005
		95	0.532
7	AHTk253	286	0.005
		288	0.806
		292	0.189
8	C22.279	116	0.644
		118	0.077
		126	0.279
9	FH2001	124	0.068
		132	0.041
		144	0.649
		148	0.243
10	FH2054	148	0.036
		152	0.514
		156	0.117
		164	0.045
		168	0.252
		176	0.036
11	FH2848	232	0.063
		234	0.032
		238	0.342
		240	0.419
		242	0.144
12	INRA21	91	0.005
		95	0.203
		97	0.140
		99	0.279
		101	0.374
13	INU005	124	0.369
		126	0.581
		132	0.050
14	INU030	146	0.059
		148	0.059
		150	0.716
		152	0.167
15	INU055	210	0.671
		214	0.032
		218	0.198
		220	0.099
16	LEI004	85	0.622
		95	0.374
		107	0.005
17	REN105L03	227	0.099
		231	0.099
		233	0.086
		235	0.248
		241	0.468
18	REN162C04	200	0.360
		204	0.032
		206	0.428
		212	0.180
19	REN169D01	212	0.212
19	REN169D01	216	0.788
20	REN169O18	162	0.153
		164	0.090
		166	0.378
		168	0.311
		174	0.068
21	REN247M23	268	0.351
		270	0.090
		272	0.077
		274	0.018
		276	0.018
		278	0.446
22	REN54P11	226	0.568
		232	0.014
		234	0.410
		240	0.009
23	REN64E19	139	0.131
		147	0.023
		151	0.095
		153	0.104
		155	0.649
24	VGL0760	13	0.050
		18.2	0.131
		19.2	0.216
		20.2	0.072
		21.2	0.320
		22.2	0.189
		23.2	0.023
25	VGL0910	13	0.131
		17.1	0.126
		19.1	0.216
		20.1	0.360
		21.1	0.162
		22.1	0.005
26	VGL1063	9	0.005
		10	0.045
		12	0.752
		14	0.054
		15	0.099
		18	0.045
27	VGL1165	14	0.045
		15	0.153
		16	0.018
		17	0.090
		19	0.054
		22	0.212
		25	0.198
		28	0.185
		29	0.045
28	VGL1828	15	0.014
		16	0.005
		17	0.081
		19	0.887
		20	0.014
29	VGL2009	11	0.869
		12	0.050
		13	0.018
		14	0.036
		15	0.027
30	VGL2409	15	0.626
		16	0.198
		17	0.108
		18	0.068
31	VGL2918	13	0.126
		14	0.306
		18.3	0.023
		19.3	0.045
		20.3	0.171
		21.3	0.329
32	VGL3008	10	0.018
		14	0.023
		15	0.266
		16	0.135
		17	0.167
		18	0.185
		20	0.054
		21	0.153
33	VGL3235	14	0.536
		15	0.261
		16	0.189
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	111	4.909	2.720	0.587	0.567	-0.028
	SE		0.255	0.209	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	111	4.000	2.003	0.399	0.451	0.084
	SE		0.286	0.220	0.047	0.065	0.032

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	111	6	2.685	0.703	0.628	-0.120
2	AHT137	111	6	1.405	0.252	0.288	0.124
3	AHTH130	111	4	1.864	0.523	0.463	-0.127
4	AHTh171-A	111	4	3.454	0.784	0.710	-0.103
5	AHTh260	111	6	2.524	0.622	0.604	-0.030
6	AHTk211	111	5	2.359	0.622	0.576	-0.079
7	AHTk253	111	3	1.458	0.315	0.314	-0.004
8	C22.279	111	3	2.005	0.559	0.501	-0.114
9	FH2001	111	4	2.057	0.595	0.514	-0.157
10	FH2054	111	6	2.893	0.676	0.654	-0.033
11	FH2848	111	5	3.140	0.712	0.682	-0.044
12	INRA21	111	5	3.592	0.703	0.722	0.026
13	INU005	111	3	2.098	0.604	0.523	-0.153
14	INU030	111	4	1.826	0.495	0.452	-0.095
15	INU055	111	4	1.998	0.505	0.499	-0.010
16	LEI004	111	3	1.900	0.523	0.474	-0.103
17	REN105L03	111	5	3.249	0.685	0.692	0.011
18	REN162C04	111	4	2.886	0.703	0.654	-0.075
19	REN169D01	111	2	1.501	0.315	0.334	0.055
20	REN169O18	111	5	3.624	0.766	0.724	-0.058
21	REN247M23	111	6	2.968	0.685	0.663	-0.033
22	REN54P11	111	4	2.039	0.550	0.510	-0.078
23	REN64E19	111	5	2.183	0.514	0.542	0.053
24	VGL0760	111	7	4.761	0.847	0.790	-0.072
25	VGL0910	111	6	4.239	0.757	0.764	0.010
26	VGL1063	111	6	1.716	0.387	0.417	0.072
27	VGL1165	111	9	6.366	0.793	0.843	0.059
28	VGL1828	111	5	1.259	0.171	0.206	0.167
29	VGL2009	111	5	1.315	0.234	0.239	0.022
30	VGL2409	111	4	2.234	0.523	0.552	0.054
31	VGL2918	111	6	4.005	0.757	0.750	-0.009
32	VGL3008	111	8	5.618	0.856	0.822	-0.041
33	VGL3235	111	4	2.554	0.640	0.608	-0.051

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	111	5	1.393	0.288	0.282	-0.022
2	DLA I-4ACA	111	5	2.578	0.514	0.612	0.161
3	DLA I-4BCT	111	4	2.669	0.532	0.625	0.150
4	DLA1131	111	3	2.309	0.486	0.567	0.142
5	5ACA	111	3	1.312	0.234	0.238	0.016
6	5ACT	111	4	2.437	0.486	0.590	0.175
7	5BCA	111	4	1.323	0.252	0.244	-0.033

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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