Updated Mar 27, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Shiloh Shepherd (n=77) |
---|---|---|
1052 | 380 372 289 184 | 0.344 |
1068 | 380 373 287 181 | 0.481 |
1165 | 392 369 281 182 | 0.104 |
1166 | 388 379 277 184 | 0.052 |
1167 | 397 381 277 184 | 0.019 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Shiloh Shepherd (n=77) |
---|---|---|
2017 | 343 322 280 | 0.344 |
2022 | 339 327 282 | 0.052 |
2053 | 343 324 280 | 0.500 |
2080 | 339 325 276 | 0.104 |
Allele Frequencies
# | Locus Name | Allele | Shiloh Shepherd (n=77) |
---|---|---|---|
1 | AHT121 | 88 | 0.019 |
98 | 0.312 | ||
102 | 0.526 | ||
104 | 0.039 | ||
108 | 0.091 | ||
112 | 0.013 | ||
2 | AHT137 | 131 | 0.097 |
137 | 0.883 | ||
139 | 0.013 | ||
153 | 0.006 | ||
3 | AHTH130 | 123 | 0.188 |
125 | 0.052 | ||
127 | 0.669 | ||
131 | 0.091 | ||
4 | AHTh171-A | 219 | 0.130 |
223 | 0.325 | ||
225 | 0.188 | ||
233 | 0.357 | ||
5 | AHTh260 | 238 | 0.234 |
242 | 0.545 | ||
246 | 0.156 | ||
248 | 0.006 | ||
252 | 0.058 | ||
6 | AHTk211 | 87 | 0.039 |
89 | 0.364 | ||
91 | 0.039 | ||
93 | 0.006 | ||
95 | 0.552 | ||
7 | AHTk253 | 286 | 0.006 |
288 | 0.812 | ||
292 | 0.182 | ||
8 | C22.279 | 116 | 0.597 |
118 | 0.091 | ||
126 | 0.312 | ||
9 | FH2001 | 124 | 0.071 |
132 | 0.045 | ||
144 | 0.656 | ||
148 | 0.227 | ||
10 | FH2054 | 148 | 0.026 |
152 | 0.506 | ||
156 | 0.149 | ||
164 | 0.058 | ||
168 | 0.227 | ||
176 | 0.032 | ||
11 | FH2848 | 232 | 0.091 |
234 | 0.039 | ||
238 | 0.338 | ||
240 | 0.403 | ||
242 | 0.130 | ||
12 | INRA21 | 91 | 0.006 |
95 | 0.273 | ||
97 | 0.156 | ||
99 | 0.240 | ||
101 | 0.325 | ||
13 | INU005 | 124 | 0.383 |
126 | 0.545 | ||
132 | 0.071 | ||
14 | INU030 | 146 | 0.078 |
148 | 0.084 | ||
150 | 0.682 | ||
152 | 0.156 | ||
15 | INU055 | 210 | 0.662 |
214 | 0.045 | ||
218 | 0.195 | ||
220 | 0.097 | ||
16 | LEI004 | 85 | 0.669 |
95 | 0.325 | ||
107 | 0.006 | ||
17 | REN105L03 | 227 | 0.104 |
231 | 0.071 | ||
233 | 0.091 | ||
235 | 0.253 | ||
241 | 0.481 | ||
18 | REN162C04 | 200 | 0.377 |
204 | 0.032 | ||
206 | 0.416 | ||
212 | 0.175 | ||
19 | REN169D01 | 212 | 0.143 |
216 | 0.857 | ||
20 | REN169O18 | 162 | 0.110 |
164 | 0.104 | ||
166 | 0.383 | ||
168 | 0.312 | ||
174 | 0.091 | ||
21 | REN247M23 | 268 | 0.370 |
270 | 0.117 | ||
272 | 0.045 | ||
276 | 0.019 | ||
278 | 0.448 | ||
22 | REN54P11 | 226 | 0.552 |
232 | 0.013 | ||
234 | 0.422 | ||
240 | 0.013 | ||
23 | REN64E19 | 139 | 0.149 |
147 | 0.032 | ||
151 | 0.045 | ||
153 | 0.117 | ||
155 | 0.656 | ||
24 | VGL0760 | 13 | 0.058 |
18.2 | 0.143 | ||
19.2 | 0.195 | ||
20.2 | 0.039 | ||
21.2 | 0.344 | ||
22.2 | 0.188 | ||
23.2 | 0.032 | ||
25 | VGL0910 | 13 | 0.156 |
17.1 | 0.123 | ||
19.1 | 0.201 | ||
20.1 | 0.364 | ||
21.1 | 0.149 | ||
22.1 | 0.006 | ||
26 | VGL1063 | 9 | 0.006 |
10 | 0.045 | ||
12 | 0.792 | ||
14 | 0.032 | ||
15 | 0.071 | ||
18 | 0.052 | ||
27 | VGL1165 | 14 | 0.058 |
15 | 0.169 | ||
16 | 0.026 | ||
17 | 0.026 | ||
19 | 0.071 | ||
22 | 0.240 | ||
25 | 0.162 | ||
28 | 0.188 | ||
29 | 0.058 | ||
28 | VGL1828 | 15 | 0.013 |
16 | 0.006 | ||
17 | 0.104 | ||
19 | 0.857 | ||
20 | 0.019 | ||
29 | VGL2009 | 11 | 0.883 |
12 | 0.039 | ||
14 | 0.039 | ||
15 | 0.039 | ||
30 | VGL2409 | 15 | 0.617 |
16 | 0.201 | ||
17 | 0.110 | ||
18 | 0.071 | ||
31 | VGL2918 | 13 | 0.175 |
14 | 0.331 | ||
19.3 | 0.006 | ||
20.3 | 0.188 | ||
21.3 | 0.299 | ||
32 | VGL3008 | 10 | 0.006 |
14 | 0.013 | ||
15 | 0.240 | ||
16 | 0.110 | ||
17 | 0.201 | ||
18 | 0.182 | ||
20 | 0.065 | ||
21 | 0.182 | ||
33 | VGL3235 | 14 | 0.578 |
15 | 0.240 | ||
16 | 0.162 | ||
17 | 0.019 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 77 | 4.727 | 2.707 | 0.589 | 0.564 | -0.037 | |
SE | 0.247 | 0.205 | 0.033 | 0.030 | 0.013 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 77 | 3.571 | 2.100 | 0.421 | 0.474 | 0.082 | |
SE | 0.341 | 0.235 | 0.045 | 0.064 | 0.033 |
Standard genetic assessment for individual STR loci
Shiloh Shepherd
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 77 | 6 | 2.603 | 0.662 | 0.616 | -0.075 |
2 | AHT137 | 77 | 4 | 1.266 | 0.208 | 0.210 | 0.012 |
3 | AHTH130 | 77 | 4 | 2.025 | 0.584 | 0.506 | -0.154 |
4 | AHTh171-A | 77 | 4 | 3.505 | 0.805 | 0.715 | -0.127 |
5 | AHTh260 | 77 | 5 | 2.632 | 0.623 | 0.620 | -0.005 |
6 | AHTk211 | 77 | 5 | 2.273 | 0.623 | 0.560 | -0.113 |
7 | AHTk253 | 77 | 3 | 1.445 | 0.299 | 0.308 | 0.030 |
8 | C22.279 | 77 | 3 | 2.163 | 0.597 | 0.538 | -0.111 |
9 | FH2001 | 77 | 4 | 2.045 | 0.571 | 0.511 | -0.118 |
10 | FH2054 | 77 | 6 | 2.979 | 0.675 | 0.664 | -0.017 |
11 | FH2848 | 77 | 5 | 3.303 | 0.740 | 0.697 | -0.062 |
12 | INRA21 | 77 | 5 | 3.819 | 0.779 | 0.738 | -0.056 |
13 | INU005 | 77 | 3 | 2.225 | 0.649 | 0.551 | -0.179 |
14 | INU030 | 77 | 4 | 1.991 | 0.545 | 0.498 | -0.096 |
15 | INU055 | 77 | 4 | 2.048 | 0.494 | 0.512 | 0.036 |
16 | LEI004 | 77 | 3 | 1.809 | 0.455 | 0.447 | -0.016 |
17 | REN105L03 | 77 | 5 | 3.133 | 0.662 | 0.681 | 0.027 |
18 | REN162C04 | 77 | 4 | 2.887 | 0.727 | 0.654 | -0.113 |
19 | REN169D01 | 77 | 2 | 1.324 | 0.260 | 0.245 | -0.061 |
20 | REN169O18 | 77 | 5 | 3.634 | 0.805 | 0.725 | -0.111 |
21 | REN247M23 | 77 | 5 | 2.826 | 0.662 | 0.646 | -0.025 |
22 | REN54P11 | 77 | 4 | 2.070 | 0.558 | 0.517 | -0.080 |
23 | REN64E19 | 77 | 5 | 2.131 | 0.506 | 0.531 | 0.046 |
24 | VGL0760 | 77 | 7 | 4.582 | 0.831 | 0.782 | -0.063 |
25 | VGL0910 | 77 | 6 | 4.262 | 0.766 | 0.765 | -0.001 |
26 | VGL1063 | 77 | 6 | 1.566 | 0.338 | 0.361 | 0.066 |
27 | VGL1165 | 77 | 9 | 6.199 | 0.805 | 0.839 | 0.040 |
28 | VGL1828 | 77 | 5 | 1.340 | 0.221 | 0.254 | 0.131 |
29 | VGL2009 | 77 | 4 | 1.275 | 0.195 | 0.216 | 0.096 |
30 | VGL2409 | 77 | 4 | 2.281 | 0.545 | 0.562 | 0.029 |
31 | VGL2918 | 77 | 5 | 3.772 | 0.766 | 0.735 | -0.043 |
32 | VGL3008 | 77 | 8 | 5.526 | 0.857 | 0.819 | -0.047 |
33 | VGL3235 | 77 | 4 | 2.390 | 0.610 | 0.582 | -0.050 |
Standard genetic assessment for 7 STRs in the DLA region
Shiloh Shepherd
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 77 | 4 | 1.441 | 0.312 | 0.306 | -0.018 |
2 | DLA I-4ACA | 77 | 5 | 2.753 | 0.545 | 0.637 | 0.143 |
3 | DLA I-4BCT | 77 | 4 | 2.738 | 0.532 | 0.635 | 0.161 |
4 | DLA1131 | 77 | 3 | 2.413 | 0.494 | 0.586 | 0.157 |
5 | 5ACA | 77 | 2 | 1.357 | 0.260 | 0.263 | 0.013 |
6 | 5ACT | 77 | 4 | 2.618 | 0.519 | 0.618 | 0.160 |
7 | 5BCA | 77 | 3 | 1.377 | 0.286 | 0.274 | -0.043 |