Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Mar 27, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiloh Shepherd (n=77)
1052380 372 289 1840.344
1068380 373 287 1810.481
1165392 369 281 1820.104
1166388 379 277 1840.052
1167397 381 277 1840.019

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiloh Shepherd (n=77)
2017343 322 2800.344
2022339 327 2820.052
2053343 324 2800.500
2080339 325 2760.104

Allele Frequencies

#Locus NameAlleleShiloh Shepherd (n=77)
1AHT121 880.019
980.312
1020.526
1040.039
1080.091
1120.013
2AHT137 1310.097
1370.883
1390.013
1530.006
3AHTH130 1230.188
1250.052
1270.669
1310.091
4AHTh171-A 2190.130
2230.325
2250.188
2330.357
5AHTh260 2380.234
2420.545
2460.156
2480.006
2520.058
6AHTk211 870.039
890.364
910.039
930.006
950.552
7AHTk253 2860.006
2880.812
2920.182
8C22.279 1160.597
1180.091
1260.312
9FH2001 1240.071
1320.045
1440.656
1480.227
10FH2054 1480.026
1520.506
1560.149
1640.058
1680.227
1760.032
11FH2848 2320.091
2340.039
2380.338
2400.403
2420.130
12INRA21 910.006
950.273
970.156
990.240
1010.325
13INU005 1240.383
1260.545
1320.071
14INU030 1460.078
1480.084
1500.682
1520.156
15INU055 2100.662
2140.045
2180.195
2200.097
16LEI004 850.669
950.325
1070.006
17REN105L03 2270.104
2310.071
2330.091
2350.253
2410.481
18REN162C04 2000.377
2040.032
2060.416
2120.175
19REN169D01 2120.143
2160.857
20REN169O18 1620.110
1640.104
1660.383
1680.312
1740.091
21REN247M23 2680.370
2700.117
2720.045
2760.019
2780.448
22REN54P11 2260.552
2320.013
2340.422
2400.013
23REN64E19 1390.149
1470.032
1510.045
1530.117
1550.656
24VGL0760 130.058
18.20.143
19.20.195
20.20.039
21.20.344
22.20.188
23.20.032
25VGL0910 130.156
17.10.123
19.10.201
20.10.364
21.10.149
22.10.006
26VGL1063 90.006
100.045
120.792
140.032
150.071
180.052
27VGL1165 140.058
150.169
160.026
170.026
190.071
220.240
250.162
280.188
290.058
28VGL1828 150.013
160.006
170.104
190.857
200.019
29VGL2009 110.883
120.039
140.039
150.039
30VGL2409 150.617
160.201
170.110
180.071
31VGL2918 130.175
140.331
19.30.006
20.30.188
21.30.299
32VGL3008 100.006
140.013
150.240
160.110
170.201
180.182
200.065
210.182
33VGL3235 140.578
150.240
160.162
170.019

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

  NNaNeHoHeF
Mean774.7272.7070.5890.564-0.037
 SE 0.2470.2050.0330.0300.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

  NNaNeHoHeF
Mean773.5712.1000.4210.4740.082
 SE 0.3410.2350.0450.0640.033

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#LocusNNaNeHoHeF
1AHT1217762.6030.6620.616-0.075
2AHT1377741.2660.2080.2100.012
3AHTH1307742.0250.5840.506-0.154
4AHTh171-A7743.5050.8050.715-0.127
5AHTh2607752.6320.6230.620-0.005
6AHTk2117752.2730.6230.560-0.113
7AHTk2537731.4450.2990.3080.030
8C22.2797732.1630.5970.538-0.111
9FH20017742.0450.5710.511-0.118
10FH20547762.9790.6750.664-0.017
11FH28487753.3030.7400.697-0.062
12INRA217753.8190.7790.738-0.056
13INU0057732.2250.6490.551-0.179
14INU0307741.9910.5450.498-0.096
15INU0557742.0480.4940.5120.036
16LEI0047731.8090.4550.447-0.016
17REN105L037753.1330.6620.6810.027
18REN162C047742.8870.7270.654-0.113
19REN169D017721.3240.2600.245-0.061
20REN169O187753.6340.8050.725-0.111
21REN247M237752.8260.6620.646-0.025
22REN54P117742.0700.5580.517-0.080
23REN64E197752.1310.5060.5310.046
24VGL07607774.5820.8310.782-0.063
25VGL09107764.2620.7660.765-0.001
26VGL10637761.5660.3380.3610.066
27VGL11657796.1990.8050.8390.040
28VGL18287751.3400.2210.2540.131
29VGL20097741.2750.1950.2160.096
30VGL24097742.2810.5450.5620.029
31VGL29187753.7720.7660.735-0.043
32VGL30087785.5260.8570.819-0.047
33VGL32357742.3900.6100.582-0.050

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#LocusNNaNeHoHeF
1DLA I-3CCA7741.4410.3120.306-0.018
2DLA I-4ACA7752.7530.5450.6370.143
3DLA I-4BCT7742.7380.5320.6350.161
4DLA11317732.4130.4940.5860.157
55ACA7721.3570.2600.2630.013
65ACT7742.6180.5190.6180.160
75BCA7731.3770.2860.274-0.043