Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Dec 21, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=113)
1035	386 373 277 184	0.018
1052	380 372 289 184	0.358
1068	380 373 287 181	0.487
1165	392 369 281 182	0.075
1166	388 379 277 184	0.040
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=113)
2017	343 322 280	0.358
2022	339 327 282	0.040
2026	351 324 284	0.018
2053	343 324 280	0.509
2080	339 325 276	0.075

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=113)
1	AHT121	88	0.013
		98	0.279
		102	0.527
		104	0.080
		108	0.093
		112	0.009
2	AHT137	131	0.128
		137	0.836
		139	0.018
		147	0.009
		149	0.004
		153	0.004
3	AHTH130	123	0.164
		125	0.044
		127	0.712
		131	0.080
4	AHTh171-A	219	0.115
		223	0.358
		225	0.195
		233	0.332
5	AHTh260	238	0.217
		242	0.566
		244	0.004
		246	0.142
		248	0.004
		252	0.066
6	AHTk211	87	0.066
		89	0.367
		91	0.035
		93	0.004
		95	0.527
7	AHTk253	286	0.004
		288	0.805
		292	0.190
8	C22.279	116	0.646
		118	0.075
		126	0.279
9	FH2001	124	0.066
		132	0.040
		144	0.650
		148	0.243
10	FH2054	148	0.035
		152	0.522
		156	0.115
		164	0.044
		168	0.248
		176	0.035
11	FH2848	232	0.062
		234	0.040
		238	0.336
		240	0.416
		242	0.146
12	INRA21	91	0.004
		95	0.204
		97	0.137
		99	0.279
		101	0.376
13	INU005	124	0.381
		126	0.571
		132	0.049
14	INU030	146	0.058
		148	0.058
		150	0.721
		152	0.164
15	INU055	210	0.668
		214	0.031
		218	0.199
		220	0.102
16	LEI004	85	0.628
		95	0.367
		107	0.004
17	REN105L03	227	0.097
		231	0.106
		233	0.084
		235	0.243
		241	0.469
18	REN162C04	200	0.358
		204	0.031
		206	0.434
		212	0.177
19	REN169D01	212	0.217
19	REN169D01	216	0.783
20	REN169O18	162	0.150
		164	0.093
		166	0.381
		168	0.305
		174	0.071
21	REN247M23	268	0.354
		270	0.088
		272	0.075
		274	0.018
		276	0.018
		278	0.447
22	REN54P11	226	0.562
		232	0.013
		234	0.416
		240	0.009
23	REN64E19	139	0.128
		147	0.022
		151	0.093
		153	0.106
		155	0.650
24	VGL0760	13	0.049
		18.2	0.137
		19.2	0.212
		20.2	0.071
		21.2	0.323
		22.2	0.186
		23.2	0.022
25	VGL0910	13	0.128
		17.1	0.133
		19.1	0.217
		20.1	0.354
		21.1	0.164
		22.1	0.004
26	VGL1063	9	0.004
		10	0.044
		12	0.752
		14	0.053
		15	0.097
		18	0.049
27	VGL1165	14	0.044
		15	0.150
		16	0.018
		17	0.088
		19	0.062
		22	0.208
		25	0.204
		28	0.181
		29	0.044
28	VGL1828	15	0.013
		16	0.004
		17	0.084
		19	0.885
		20	0.013
29	VGL2009	11	0.872
		12	0.049
		13	0.018
		14	0.035
		15	0.027
30	VGL2409	15	0.624
		16	0.199
		17	0.106
		18	0.071
31	VGL2918	13	0.128
		14	0.305
		18.3	0.022
		19.3	0.044
		20.3	0.168
		21.3	0.332
32	VGL3008	10	0.018
		14	0.022
		15	0.261
		16	0.133
		17	0.173
		18	0.186
		20	0.053
		21	0.155
33	VGL3235	14	0.531
		15	0.270
		16	0.186
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	113	4.909	2.724	0.586	0.567	-0.028
	SE		0.255	0.210	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	113	4.000	1.991	0.397	0.448	0.083
	SE		0.286	0.218	0.048	0.065	0.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	113	6	2.701	0.708	0.630	-0.124
2	AHT137	113	6	1.396	0.248	0.284	0.127
3	AHTH130	113	4	1.843	0.513	0.457	-0.122
4	AHTh171-A	113	4	3.452	0.779	0.710	-0.096
5	AHTh260	113	6	2.549	0.619	0.608	-0.019
6	AHTk211	113	5	2.393	0.628	0.582	-0.079
7	AHTk253	113	3	1.460	0.319	0.315	-0.011
8	C22.279	113	3	1.997	0.558	0.499	-0.117
9	FH2001	113	4	2.048	0.593	0.512	-0.159
10	FH2054	113	6	2.843	0.664	0.648	-0.024
11	FH2848	113	5	3.197	0.717	0.687	-0.043
12	INRA21	113	5	3.579	0.708	0.721	0.017
13	INU005	113	3	2.114	0.593	0.527	-0.125
14	INU030	113	4	1.806	0.487	0.446	-0.090
15	INU055	113	4	2.011	0.513	0.503	-0.021
16	LEI004	113	3	1.888	0.513	0.470	-0.091
17	REN105L03	113	5	3.257	0.690	0.693	0.004
18	REN162C04	113	4	2.867	0.699	0.651	-0.074
19	REN169D01	113	2	1.514	0.327	0.340	0.036
20	REN169O18	113	5	3.646	0.761	0.726	-0.049
21	REN247M23	113	6	2.949	0.690	0.661	-0.044
22	REN54P11	113	4	2.045	0.549	0.511	-0.074
23	REN64E19	113	5	2.174	0.513	0.540	0.050
24	VGL0760	113	7	4.747	0.850	0.789	-0.076
25	VGL0910	113	6	4.288	0.761	0.767	0.007
26	VGL1063	113	6	1.717	0.389	0.418	0.067
27	VGL1165	113	9	6.405	0.779	0.844	0.077
28	VGL1828	113	5	1.265	0.177	0.209	0.155
29	VGL2009	113	5	1.308	0.230	0.236	0.023
30	VGL2409	113	4	2.246	0.522	0.555	0.059
31	VGL2918	113	6	3.992	0.761	0.749	-0.015
32	VGL3008	113	8	5.628	0.850	0.822	-0.033
33	VGL3235	113	4	2.567	0.637	0.611	-0.044

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	113	5	1.384	0.283	0.278	-0.020
2	DLA I-4ACA	113	5	2.560	0.513	0.609	0.158
3	DLA I-4BCT	113	4	2.650	0.531	0.623	0.147
4	DLA1131	113	3	2.302	0.487	0.566	0.139
5	5ACA	113	3	1.306	0.230	0.234	0.018
6	5ACT	113	4	2.422	0.487	0.587	0.171
7	5BCA	113	4	1.316	0.248	0.240	-0.031

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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