Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Jun 15, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=116)
1035	386 373 277 184	0.017
1052	380 372 289 184	0.362
1068	380 373 287 181	0.483
1165	392 369 281 182	0.073
1166	388 379 277 184	0.043
1167	397 381 277 184	0.022

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=116)
2017	343 322 280	0.362
2022	339 327 282	0.043
2026	351 324 284	0.017
2053	343 324 280	0.504
2080	339 325 276	0.073

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=116)
1	AHT121	88	0.013
		98	0.276
		102	0.530
		104	0.082
		108	0.091
		112	0.009
2	AHT137	131	0.125
		137	0.841
		139	0.017
		147	0.009
		149	0.004
		153	0.004
3	AHTH130	123	0.159
		125	0.043
		127	0.720
		131	0.078
4	AHTh171-A	219	0.112
		223	0.362
		225	0.194
		233	0.332
5	AHTh260	238	0.216
		242	0.569
		244	0.004
		246	0.142
		248	0.004
		252	0.065
6	AHTk211	87	0.065
		89	0.358
		91	0.034
		93	0.009
		95	0.534
7	AHTk253	286	0.004
		288	0.802
		292	0.194
8	C22.279	116	0.647
		118	0.078
		126	0.276
9	FH2001	124	0.065
		132	0.039
		144	0.647
		148	0.250
10	FH2054	148	0.034
		152	0.513
		156	0.125
		164	0.043
		168	0.241
		176	0.043
11	FH2848	232	0.060
		234	0.043
		238	0.336
		240	0.418
		242	0.142
12	INRA21	91	0.004
		95	0.216
		97	0.138
		99	0.276
		101	0.366
13	INU005	124	0.379
		126	0.573
		132	0.047
14	INU030	146	0.056
		148	0.060
		150	0.720
		152	0.164
15	INU055	210	0.668
		214	0.030
		218	0.203
		220	0.099
16	LEI004	85	0.629
		95	0.366
		107	0.004
17	REN105L03	227	0.095
		231	0.103
		233	0.086
		235	0.246
		241	0.470
18	REN162C04	200	0.353
		204	0.034
		206	0.431
		212	0.181
19	REN169D01	212	0.216
19	REN169D01	216	0.784
20	REN169O18	162	0.147
		164	0.095
		166	0.371
		168	0.306
		174	0.082
21	REN247M23	268	0.362
		270	0.086
		272	0.078
		274	0.017
		276	0.017
		278	0.440
22	REN54P11	226	0.569
		232	0.013
		234	0.409
		240	0.009
23	REN64E19	139	0.129
		147	0.026
		151	0.099
		153	0.103
		155	0.642
24	VGL0760	13	0.047
		18.2	0.138
		19.2	0.216
		20.2	0.069
		21.2	0.319
		22.2	0.190
		23.2	0.022
25	VGL0910	13	0.125
		17.1	0.134
		19.1	0.216
		20.1	0.358
		21.1	0.164
		22.1	0.004
26	VGL1063	9	0.004
		10	0.047
		12	0.750
		14	0.052
		15	0.095
		18	0.052
27	VGL1165	14	0.043
		15	0.151
		16	0.017
		17	0.086
		19	0.060
		22	0.207
		25	0.211
		28	0.181
		29	0.043
28	VGL1828	15	0.013
		16	0.004
		17	0.086
		19	0.884
		20	0.013
29	VGL2009	11	0.871
		12	0.052
		13	0.017
		14	0.034
		15	0.026
30	VGL2409	15	0.634
		16	0.194
		17	0.103
		18	0.069
31	VGL2918	13	0.129
		14	0.310
		18.3	0.022
		19.3	0.043
		20.3	0.164
		21.3	0.332
32	VGL3008	10	0.017
		14	0.022
		15	0.259
		16	0.129
		17	0.168
		18	0.185
		20	0.056
		21	0.164
33	VGL3235	14	0.526
		15	0.267
		16	0.194
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	116	4.909	2.726	0.586	0.568	-0.027
	SE		0.255	0.210	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	116	4.000	1.997	0.400	0.449	0.078
	SE		0.286	0.219	0.048	0.065	0.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	116	6	2.686	0.707	0.628	-0.126
2	AHT137	116	6	1.384	0.241	0.277	0.130
3	AHTH130	116	4	1.813	0.500	0.449	-0.115
4	AHTh171-A	116	4	3.431	0.784	0.709	-0.107
5	AHTh260	116	6	2.534	0.621	0.605	-0.025
6	AHTk211	116	5	2.386	0.621	0.581	-0.069
7	AHTk253	116	3	1.470	0.328	0.320	-0.025
8	C22.279	116	3	1.999	0.552	0.500	-0.104
9	FH2001	116	4	2.057	0.586	0.514	-0.141
10	FH2054	116	6	2.925	0.655	0.658	0.004
11	FH2848	116	5	3.189	0.724	0.686	-0.055
12	INRA21	116	5	3.625	0.698	0.724	0.036
13	INU005	116	3	2.106	0.595	0.525	-0.133
14	INU030	116	4	1.812	0.491	0.448	-0.096
15	INU055	116	4	2.007	0.517	0.502	-0.031
16	LEI004	116	3	1.886	0.517	0.470	-0.101
17	REN105L03	116	5	3.244	0.690	0.692	0.003
18	REN162C04	116	4	2.901	0.707	0.655	-0.079
19	REN169D01	116	2	1.511	0.328	0.338	0.031
20	REN169O18	116	5	3.728	0.750	0.732	-0.025
21	REN247M23	116	6	2.955	0.690	0.662	-0.042
22	REN54P11	116	4	2.034	0.543	0.508	-0.068
23	REN64E19	116	5	2.220	0.526	0.550	0.043
24	VGL0760	116	7	4.747	0.853	0.789	-0.081
25	VGL0910	116	6	4.260	0.759	0.765	0.009
26	VGL1063	116	6	1.727	0.397	0.421	0.058
27	VGL1165	116	9	6.328	0.776	0.842	0.079
28	VGL1828	116	5	1.268	0.181	0.211	0.144
29	VGL2009	116	5	1.311	0.233	0.237	0.018
30	VGL2409	116	4	2.200	0.509	0.545	0.068
31	VGL2918	116	6	3.963	0.767	0.748	-0.026
32	VGL3008	116	8	5.651	0.853	0.823	-0.037
33	VGL3235	116	4	2.592	0.629	0.614	-0.024

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	116	5	1.386	0.284	0.278	-0.022
2	DLA I-4ACA	116	5	2.572	0.517	0.611	0.154
3	DLA I-4BCT	116	4	2.658	0.534	0.624	0.143
4	DLA1131	116	3	2.296	0.491	0.564	0.129
5	5ACA	116	3	1.308	0.233	0.236	0.012
6	5ACT	116	4	2.437	0.491	0.590	0.167
7	5BCA	116	4	1.319	0.250	0.242	-0.034

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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