Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Sep 7, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=117)
1035	386 373 277 184	0.017
1052	380 372 289 184	0.363
1068	380 373 287 181	0.483
1165	392 369 281 182	0.073
1166	388 379 277 184	0.043
1167	397 381 277 184	0.021

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=117)
2017	343 322 280	0.363
2022	339 327 282	0.043
2026	351 324 284	0.017
2053	343 324 280	0.504
2080	339 325 276	0.073

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=117)
1	AHT121	88	0.013
		98	0.278
		102	0.530
		104	0.081
		108	0.090
		112	0.009
2	AHT137	131	0.124
		137	0.842
		139	0.017
		147	0.009
		149	0.004
		153	0.004
3	AHTH130	123	0.158
		125	0.043
		127	0.722
		131	0.077
4	AHTh171-A	219	0.111
		223	0.363
		225	0.192
		233	0.333
5	AHTh260	238	0.222
		242	0.564
		244	0.004
		246	0.141
		248	0.004
		252	0.064
6	AHTk211	87	0.064
		89	0.355
		91	0.034
		93	0.009
		95	0.538
7	AHTk253	286	0.004
		288	0.803
		292	0.192
8	C22.279	116	0.650
		118	0.077
		126	0.274
9	FH2001	124	0.064
		132	0.038
		144	0.650
		148	0.248
10	FH2054	148	0.034
		152	0.517
		156	0.124
		164	0.043
		168	0.239
		176	0.043
11	FH2848	232	0.060
		234	0.043
		238	0.338
		240	0.415
		242	0.145
12	INRA21	91	0.004
		95	0.214
		97	0.137
		99	0.278
		101	0.368
13	INU005	124	0.376
		126	0.577
		132	0.047
14	INU030	146	0.056
		148	0.060
		150	0.718
		152	0.167
15	INU055	210	0.671
		214	0.030
		218	0.201
		220	0.098
16	LEI004	85	0.628
		95	0.368
		107	0.004
17	REN105L03	227	0.094
		231	0.103
		233	0.085
		235	0.248
		241	0.470
18	REN162C04	200	0.355
		204	0.034
		206	0.427
		212	0.184
19	REN169D01	212	0.214
19	REN169D01	216	0.786
20	REN169O18	162	0.145
		164	0.094
		166	0.368
		168	0.308
		174	0.085
21	REN247M23	268	0.359
		270	0.085
		272	0.081
		274	0.017
		276	0.017
		278	0.440
22	REN54P11	226	0.568
		232	0.013
		234	0.410
		240	0.009
23	REN64E19	139	0.128
		147	0.026
		151	0.103
		153	0.103
		155	0.641
24	VGL0760	13	0.051
		18.2	0.141
		19.2	0.214
		20.2	0.068
		21.2	0.316
		22.2	0.188
		23.2	0.021
25	VGL0910	13	0.124
		17.1	0.132
		19.1	0.214
		20.1	0.355
		21.1	0.167
		22.1	0.009
26	VGL1063	9	0.004
		10	0.047
		12	0.752
		14	0.051
		15	0.094
		18	0.051
27	VGL1165	14	0.043
		15	0.154
		16	0.017
		17	0.085
		19	0.060
		22	0.209
		25	0.209
		28	0.179
		29	0.043
28	VGL1828	15	0.013
		16	0.004
		17	0.085
		19	0.885
		20	0.013
29	VGL2009	11	0.872
		12	0.051
		13	0.017
		14	0.034
		15	0.026
30	VGL2409	15	0.632
		16	0.197
		17	0.103
		18	0.068
31	VGL2918	13	0.132
		14	0.312
		18.3	0.021
		19.3	0.043
		20.3	0.162
		21.3	0.329
32	VGL3008	10	0.017
		14	0.021
		15	0.261
		16	0.132
		17	0.167
		18	0.184
		20	0.056
		21	0.162
33	VGL3235	14	0.526
		15	0.269
		16	0.192
		17	0.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	117	4.909	2.726	0.586	0.567	-0.027
	SE		0.255	0.210	0.031	0.029	0.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	117	4.000	1.993	0.402	0.448	0.074
	SE		0.286	0.219	0.049	0.065	0.029

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	117	6	2.682	0.709	0.627	-0.131
2	AHT137	117	6	1.380	0.239	0.275	0.131
3	AHTH130	117	4	1.804	0.496	0.446	-0.112
4	AHTh171-A	117	4	3.420	0.786	0.708	-0.111
5	AHTh260	117	6	2.553	0.615	0.608	-0.012
6	AHTk211	117	5	2.375	0.615	0.579	-0.063
7	AHTk253	117	3	1.465	0.325	0.318	-0.023
8	C22.279	117	3	1.989	0.547	0.497	-0.100
9	FH2001	117	4	2.045	0.581	0.511	-0.137
10	FH2054	117	6	2.900	0.650	0.655	0.009
11	FH2848	117	5	3.202	0.726	0.688	-0.056
12	INRA21	117	5	3.615	0.701	0.723	0.031
13	INU005	117	3	2.099	0.590	0.524	-0.126
14	INU030	117	4	1.819	0.496	0.450	-0.101
15	INU055	117	4	1.996	0.513	0.499	-0.028
16	LEI004	117	3	1.888	0.521	0.470	-0.109
17	REN105L03	117	5	3.235	0.692	0.691	-0.002
18	REN162C04	117	4	2.912	0.709	0.657	-0.080
19	REN169D01	117	2	1.506	0.325	0.336	0.033
20	REN169O18	117	5	3.745	0.752	0.733	-0.026
21	REN247M23	117	6	2.967	0.692	0.663	-0.044
22	REN54P11	117	4	2.034	0.547	0.508	-0.076
23	REN64E19	117	5	2.227	0.530	0.551	0.038
24	VGL0760	117	7	4.792	0.855	0.791	-0.080
25	VGL0910	117	6	4.306	0.761	0.768	0.009
26	VGL1063	117	6	1.718	0.393	0.418	0.059
27	VGL1165	117	9	6.313	0.778	0.842	0.076
28	VGL1828	117	5	1.266	0.179	0.210	0.144
29	VGL2009	117	5	1.308	0.231	0.235	0.019
30	VGL2409	117	4	2.203	0.513	0.546	0.061
31	VGL2918	117	6	3.971	0.769	0.748	-0.028
32	VGL3008	117	8	5.641	0.855	0.823	-0.039
33	VGL3235	117	4	2.591	0.632	0.614	-0.030

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	117	5	1.382	0.282	0.276	-0.021
2	DLA I-4ACA	117	5	2.567	0.521	0.610	0.146
3	DLA I-4BCT	117	4	2.652	0.538	0.623	0.136
4	DLA1131	117	3	2.294	0.496	0.564	0.121
5	5ACA	117	3	1.305	0.231	0.234	0.013
6	5ACT	117	4	2.434	0.496	0.589	0.159
7	5BCA	117	4	1.316	0.248	0.240	-0.033

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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