Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Sep 1, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=145)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.393
1068	380 373 287 181	0.441
1160	386 369 289 176	0.003
1165	392 369 281 182	0.076
1166	388 379 277 184	0.048
1167	397 381 277 184	0.024

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=145)
2017	343 322 280	0.393
2022	339 327 282	0.048
2024	343 323 280	0.003
2026	351 324 284	0.014
2053	343 324 280	0.466
2080	339 325 276	0.076

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=146)
1	AHT121	88	0.010
		92	0.003
		98	0.291
		102	0.524
		104	0.082
		108	0.082
		112	0.007
2	AHT137	131	0.116
		137	0.849
		139	0.017
		147	0.010
		149	0.003
		153	0.003
3	AHTH130	123	0.188
		125	0.051
		127	0.682
		131	0.079
4	AHTh171-A	219	0.106
		221	0.003
		223	0.318
		225	0.185
		233	0.387
5	AHTh260	238	0.223
		242	0.551
		244	0.003
		246	0.147
		248	0.003
		252	0.072
6	AHTk211	87	0.068
		89	0.339
		91	0.034
		93	0.007
		95	0.551
7	AHTk253	286	0.003
		288	0.822
		292	0.175
8	C22.279	116	0.634
		118	0.082
		126	0.284
9	FH2001	124	0.055
		132	0.048
		144	0.640
		148	0.253
		152	0.003
10	FH2054	148	0.034
		152	0.517
		156	0.116
		164	0.051
		168	0.243
		176	0.038
11	FH2848	232	0.062
		234	0.038
		238	0.339
		240	0.394
		242	0.168
12	INRA21	91	0.003
		93	0.003
		95	0.199
		97	0.140
		99	0.284
		101	0.370
13	INU005	124	0.360
		126	0.599
		132	0.041
14	INU030	146	0.058
		148	0.058
		150	0.729
		152	0.154
15	INU055	210	0.678
		214	0.034
		218	0.202
		220	0.086
16	LEI004	85	0.606
		95	0.390
		107	0.003
17	REN105L03	227	0.089
		231	0.096
		233	0.092
		235	0.243
		241	0.479
18	REN162C04	200	0.353
		202	0.003
		204	0.031
		206	0.428
		212	0.185
19	REN169D01	212	0.209
		216	0.788
		220	0.003
20	REN169O18	162	0.158
		164	0.086
		166	0.356
		168	0.305
		174	0.096
21	REN247M23	268	0.339
		270	0.099
		272	0.089
		274	0.014
		276	0.024
		278	0.435
22	REN54P11	226	0.558
		232	0.014
		234	0.418
		238	0.003
		240	0.007
23	REN64E19	139	0.123
		147	0.021
		151	0.103
		153	0.110
		155	0.644
24	VGL0760	13	0.055
		18.2	0.134
		19.2	0.216
		20.2	0.062
		21.2	0.305
		22.2	0.205
		23.2	0.021
		24.2	0.003
25	VGL0910	13	0.116
		17.1	0.123
		19.1	0.223
		20.1	0.353
		21.1	0.175
		22.1	0.010
26	VGL1063	9	0.003
		10	0.041
		12	0.764
		13	0.003
		14	0.045
		15	0.092
		18	0.051
27	VGL1165	14	0.038
		15	0.168
		16	0.014
		17	0.075
		19	0.062
		21	0.003
		22	0.205
		23	0.003
		25	0.205
		28	0.185
		29	0.041
28	VGL1828	15	0.010
		16	0.003
		17	0.096
		19	0.877
		20	0.014
29	VGL2009	9	0.003
		11	0.873
		12	0.048
		13	0.014
		14	0.041
		15	0.021
30	VGL2409	15	0.647
		16	0.192
		17	0.092
		18	0.068
31	VGL2918	13	0.140
		14	0.305
		18.3	0.017
		19.3	0.045
		20.3	0.158
		21.3	0.329
		22.3	0.007
32	VGL3008	10	0.017
		14	0.017
		15	0.271
		16	0.113
		17	0.182
		18	0.175
		20	0.058
		21	0.164
		22	0.003
33	VGL3235	14	0.555
		15	0.257
		16	0.175
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	146	5.333	2.728	0.579	0.567	-0.016
	SE		0.305	0.210	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	146	4.429	2.056	0.415	0.461	0.067
	SE		0.341	0.236	0.049	0.066	0.032

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	146	7	2.681	0.712	0.627	-0.136
2	AHT137	146	6	1.360	0.233	0.265	0.120
3	AHTH130	146	4	1.966	0.527	0.491	-0.074
4	AHTh171-A	146	5	3.371	0.740	0.703	-0.052
5	AHTh260	146	6	2.629	0.623	0.620	-0.006
6	AHTk211	146	5	2.354	0.589	0.575	-0.024
7	AHTk253	146	3	1.416	0.301	0.294	-0.025
8	C22.279	146	3	2.045	0.541	0.511	-0.059
9	FH2001	146	5	2.085	0.548	0.520	-0.053
10	FH2054	146	6	2.896	0.644	0.655	0.017
11	FH2848	146	5	3.296	0.726	0.697	-0.042
12	INRA21	146	6	3.613	0.685	0.723	0.053
13	INU005	146	3	2.040	0.562	0.510	-0.102
14	INU030	146	4	1.777	0.486	0.437	-0.112
15	INU055	146	4	1.964	0.479	0.491	0.023
16	LEI004	146	3	1.924	0.541	0.480	-0.127
17	REN105L03	146	5	3.178	0.658	0.685	0.041
18	REN162C04	146	5	2.917	0.705	0.657	-0.074
19	REN169D01	146	3	1.506	0.322	0.336	0.042
20	REN169O18	146	5	3.830	0.760	0.739	-0.029
21	REN247M23	146	6	3.099	0.692	0.677	-0.021
22	REN54P11	146	5	2.056	0.548	0.514	-0.067
23	REN64E19	146	5	2.209	0.521	0.547	0.049
24	VGL0760	146	8	4.837	0.849	0.793	-0.071
25	VGL0910	146	6	4.285	0.767	0.767	-0.001
26	VGL1063	146	7	1.672	0.390	0.402	0.029
27	VGL1165	146	11	6.266	0.788	0.840	0.063
28	VGL1828	146	5	1.285	0.205	0.222	0.074
29	VGL2009	146	6	1.303	0.219	0.233	0.058
30	VGL2409	146	4	2.132	0.507	0.531	0.046
31	VGL2918	146	7	4.035	0.760	0.752	-0.011
32	VGL3008	146	9	5.542	0.863	0.820	-0.053
33	VGL3235	146	4	2.472	0.603	0.596	-0.012

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	146	5	1.414	0.295	0.293	-0.006
2	DLA I-4ACA	146	6	2.733	0.541	0.634	0.147
3	DLA I-4BCT	146	4	2.734	0.548	0.634	0.136
4	DLA1131	146	4	2.320	0.493	0.569	0.133
5	5ACA	146	3	1.315	0.247	0.240	-0.028
6	5ACT	146	5	2.548	0.521	0.608	0.143
7	5BCA	146	4	1.328	0.260	0.247	-0.054

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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