Statistics and Breed-wide Allele Frequency - Poodle

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesPoodle (n=3257)
1001380 373 281 1820.2728
1002380 365 281 1810.1701
1003387 375 277 1860.1710
1004393 379 277 1830.0877
1005389 371 277 1810.0611
1006387 375 293 1800.0467
1007380 372 281 1820.0336
1008386 373 289 1820.0149
1009382 377 277 1840.0166
1010384 371 277 1860.0107
1011376 365 281 1800.0187
1012388 369 289 1880.0095
1013392 373 289 1860.0106
1014375 373 287 1780.0097
1015380 373 291 1860.0021
1016382 371 277 1780.0198
1017386 373 289 1780.0031
1018375 373 287 1860.0072
1019380 373 287 1850.0029
1020388 369 289 1840.0045
1021380 373 289 1860.0025
1022380 375 281 1810.0002
1023380 379 281 1810.0002
1024387 373 281 1820.0002
1025380 365 281 1860.0003
1026390 369 289 1860.0014
1027391 371 277 1810.0008
1028376 369 291 1860.0012
1029380 365 281 1820.0025
1030380 373 293 1780.0025
1031382 371 277 1860.0014
1032382 377 277 1780.0002
1033382 379 277 1810.0018
1034382 379 277 1820.0002
1035386 373 277 1840.0002
1036389 365 289 1800.0021
1040380 371 277 1860.0005
1043393 381 277 1830.0017
1045376 371 277 1860.0011
1046376 379 291 1800.0003
1053382 377 277 1860.0003
1092376 379 277 1810.0002
1102389 375 293 1800.0002
1103389 375 293 1810.0003
1105382 379 277 1780.0026
1106395 379 277 1780.0002
1134384 365 291 1780.0002
1141380 365 281 1800.0003
1169380 365 277 1800.0011
1220387 375 277 1780.0002
1225387 374 287 1860.0002
1234380 371 281 1810.0003

DLA Class II Haplotype Frequencies

DLA2 #STR typesPoodle (n=3257)
2001343 324 2840.6088
2002343 327 2800.0892
2003343 324 2820.0909
2004351 327 2680.0301
2005339 322 2800.0181
2006339 325 2800.0336
2007351 327 2800.0158
2008339 327 2760.0166
2009351 324 2800.0115
2010345 329 2800.0107
2011345 322 2840.0189
2012345 322 2800.0049
2013345 327 2840.0097
2014339 322 2840.0184
2015339 327 2800.0057
2016339 323 2840.0029
2017343 322 2800.0025
2019345 324 2840.0002
2020349 324 2840.0003
2021339 324 2680.0029
2022339 327 2820.0002
2023341 323 2820.0025
2024343 323 2800.0002
2025351 321 2800.0021
2026351 324 2840.0011
2028345 327 2880.0005
2035341 323 2800.0002
2039345 327 2760.0009
2040345 327 2800.0002
2066339 324 2800.0002
2101341 324 2800.0003
2115343 327 2840.0002

Allele Frequencies

#Locus NameAllelePoodle (n=3259)
1AHT121 920.0115
940.0229
960.0146
980.3290
1000.0881
1020.0046
1040.1880
1060.0743
1080.1819
1100.0641
1120.0207
1140.0003
2AHT137 1310.2363
1330.0094
1350.0002
1370.1671
1390.0005
1410.3762
1430.0110
1450.0494
1470.0548
1490.0025
1510.0927
3AHTH130 1110.0162
1170.0014
1190.3950
1210.1371
1230.0835
1250.0002
1270.1225
1290.2109
1310.0158
1330.0140
1350.0035
4AHTh171-A 2170.0081
2190.3646
2210.2436
2230.0075
2250.1519
2270.0078
2290.0454
2310.0181
2330.0009
2350.1341
2370.0178
5AHTh260 2380.5800
2400.0261
2420.0003
2440.0474
2460.1996
2480.0656
2500.0307
2520.0375
2540.0040
2560.0089
6AHTk211 870.1829
890.0391
910.6700
930.0018
950.1059
970.0002
7AHTk253 2800.0134
2840.1289
2860.0996
2880.4110
2900.2204
2920.1266
2960.0002
8C22.279 1160.0777
1180.4059
1200.0037
1240.3709
1260.0565
1280.0261
1300.0591
1340.0002
9FH2001 1240.0170
1320.4314
1360.0594
1400.0220
1440.2443
1480.2128
1520.0114
1580.0017
10FH2054 1480.0103
1520.0305
1560.5539
1600.0166
1640.0023
1680.2929
1720.0834
1760.0095
1800.0006
11FH2848 2300.0118
2320.0187
2340.0121
2360.0481
2380.1296
2400.6963
2420.0831
2440.0002
2460.0002
12INRA21 910.3714
930.0002
950.4075
970.0421
990.0545
1010.1034
1030.0055
1050.0137
1090.0018
13INU005 1100.0169
1200.0002
1220.0002
1240.5127
1260.4550
1280.0025
1300.0095
1320.0003
1380.0028
14INU030 1440.3184
1460.1447
1480.0614
1500.0864
1520.3878
1540.0008
1560.0003
1580.0002
15INU055 2080.0011
2100.2182
2120.0582
2140.3005
2160.3743
2180.0344
2200.0115
2220.0018
16LEI004 850.6641
950.0941
970.0014
1050.0011
1070.2072
1090.0322
17REN105L03 2270.0091
2310.2660
2330.2000
2350.0049
2370.0137
2390.0115
2410.4945
2430.0005
18REN162C04 2000.0207
2020.1729
2040.0593
2060.5573
2080.0893
2100.0651
2120.0355
19REN169D01 2020.0072
2100.0012
2120.0739
2140.0015
2160.4142
2180.2693
2200.0017
2220.0408
2240.1711
2260.0189
20REN169O18 1560.0005
1600.0335
1620.5861
1640.3095
1660.0126
1680.0236
1700.0262
1720.0080
21REN247M23 2660.0397
2680.5149
2700.2314
2720.2073
2740.0029
2780.0037
22REN54P11 2220.0018
2260.2545
2280.1797
2300.0020
2320.3378
2340.2121
2360.0038
2380.0077
2420.0006
23REN64E19 1390.0015
1430.0072
1450.4173
1470.2580
1490.0342
1530.2591
1550.0227
24VGL0760 120.3015
130.0011
140.0134
150.0120
180.0012
190.0852
19.20.1279
200.0356
20.20.1707
210.0020
21.20.0513
22.20.0150
23.20.1076
24.20.0596
25.20.0157
26.20.0003
25VGL0910 120.0008
130.0488
140.0157
150.0138
15.10.0114
160.0002
16.10.0055
17.10.1080
18.10.2810
190.0002
19.10.1383
20.10.0338
21.10.2776
220.0075
22.10.0201
230.0308
23.10.0058
240.0008
26VGL1063 80.0209
90.0034
100.0002
110.0015
120.0312
130.1579
140.1406
150.0677
160.1056
170.0342
180.0445
190.3109
200.0411
210.0279
220.0098
230.0025
240.0002
27VGL1165 130.0002
140.0002
150.0060
160.0457
170.0011
180.0137
190.0103
200.0011
210.0829
220.0017
230.0031
240.0172
250.1128
25.30.0002
260.4751
270.1093
280.1116
290.0032
300.0041
310.0002
320.0005
340.0002
28VGL1828 140.0338
150.0005
160.0468
170.0193
180.0890
190.4452
200.3200
210.0399
220.0054
230.0002
29VGL2009 90.4378
100.0049
110.0350
120.0470
130.2479
140.1957
150.0316
160.0002
30VGL2409 130.0322
140.2607
150.2002
160.1443
170.1944
180.1397
190.0278
200.0005
31VGL2918 70.0002
120.0072
130.1048
140.2069
150.1680
160.0465
16.30.0011
170.0025
17.30.0316
18.30.0180
19.30.1149
20.30.1223
21.30.1389
22.30.0342
23.30.0029
32VGL3008 120.0002
130.0081
140.0353
150.2281
160.0302
170.5221
180.0226
18.20.0002
190.1280
200.0229
210.0025
33VGL3235 120.1562
130.0471
140.1440
150.0347
160.3181
170.2290
180.0698
190.0011

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
PoodleMean325910.0003.6640.6730.6950.032
 SE 0.6370.2250.0180.0170.004

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
PoodleMean32598.2862.9280.5770.5990.038
 SE 1.0440.4490.0580.0580.008

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1213259125.1180.7770.8050.034
2AHT1373259114.1750.7400.7600.027
3AHTH1303259114.1320.7270.7580.041
4AHTh171-A3259114.2330.7550.7640.011
5AHTh2603259102.5920.5850.6140.048
6AHTk211325962.0200.4660.5050.076
7AHTk253325973.8430.7360.7400.005
8C22.279325983.1670.6960.684-0.016
9FH2001325983.3840.6840.7050.029
10FH2054325992.4940.6010.599-0.004
11FH2848325991.9550.4600.4880.058
12INRA21325993.1290.6690.6800.016
13INU005325992.1260.5100.5300.036
14INU030325983.5210.6970.7160.026
15INU055325983.5370.7020.7170.021
16LEI004325962.0250.5040.5060.004
17REN105L03325982.8120.6100.6440.053
18REN162C04325972.7950.6070.6420.055
19REN169D013259103.5600.6730.7190.064
20REN169O18325982.2630.5190.5580.071
21REN247M23325962.7530.6170.6370.032
22REN54P11325993.9030.7060.7440.051
23REN64E19325973.2310.6710.6900.029
24VGL07603259166.1170.8230.8370.016
25VGL09103259185.1980.7970.8080.013
26VGL10633259176.0880.8120.8360.028
27VGL11653259223.6700.6920.7280.048
28VGL18283259103.1860.6590.6860.039
29VGL2009325983.3800.6640.7040.058
30VGL2409325985.3170.7920.8120.024
31VGL29183259157.4510.8500.8660.019
32VGL30083259112.9050.6490.6560.010
33VGL3235325984.8290.7660.7930.035

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA3259143.2810.6740.6950.030
2DLA I-4ACA3259104.6880.7660.7870.026
3DLA I-4BCT325962.5130.5830.6020.031
4DLA1131325994.5600.7600.7810.027
55ACA325961.5570.3460.3580.033
65ACT325971.8290.4410.4530.028
75BCA325962.0650.4690.5160.090