Updated Oct 4, 2023
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Poodle (n=5177) |
---|---|---|
1001 | 380 373 281 182 | 0.26656 |
1002 | 380 365 281 181 | 0.15965 |
1003 | 387 375 277 186 | 0.17500 |
1004 | 393 379 277 183 | 0.08432 |
1005 | 389 371 277 181 | 0.06732 |
1006 | 387 375 293 180 | 0.04752 |
1007 | 380 372 281 182 | 0.03438 |
1008 | 386 373 289 182 | 0.01304 |
1009 | 382 377 277 184 | 0.01478 |
1010 | 384 371 277 186 | 0.01120 |
1011 | 376 365 281 180 | 0.01980 |
1012 | 388 369 289 188 | 0.01478 |
1013 | 392 373 289 186 | 0.00898 |
1014 | 375 373 287 178 | 0.01111 |
1015 | 380 373 291 186 | 0.00135 |
1016 | 382 371 277 178 | 0.02173 |
1017 | 386 373 289 178 | 0.00261 |
1018 | 375 373 287 186 | 0.00918 |
1019 | 380 373 287 185 | 0.00319 |
1020 | 388 369 289 184 | 0.00309 |
1021 | 380 373 289 186 | 0.00184 |
1022 | 380 375 281 181 | 0.00010 |
1023 | 380 379 281 181 | 0.00010 |
1024 | 387 373 281 182 | 0.00010 |
1025 | 380 365 281 186 | 0.00019 |
1026 | 390 369 289 186 | 0.00357 |
1027 | 391 371 277 181 | 0.00048 |
1028 | 376 369 291 186 | 0.00097 |
1029 | 380 365 281 182 | 0.00164 |
1030 | 380 373 293 178 | 0.00212 |
1031 | 382 371 277 186 | 0.00126 |
1032 | 382 377 277 178 | 0.00010 |
1033 | 382 379 277 181 | 0.00338 |
1034 | 382 379 277 182 | 0.00048 |
1035 | 386 373 277 184 | 0.00010 |
1036 | 389 365 289 180 | 0.00164 |
1040 | 380 371 277 186 | 0.00058 |
1043 | 393 381 277 183 | 0.00135 |
1045 | 376 371 277 186 | 0.00068 |
1046 | 376 379 291 180 | 0.00029 |
1052 | 380 372 289 184 | 0.00029 |
1053 | 382 377 277 186 | 0.00019 |
1054 | 382 379 277 184 | 0.00019 |
1065 | 380 371 277 181 | 0.00019 |
1069 | 380 365 281 184 | 0.00010 |
1084 | 376 373 277 184 | 0.00029 |
1092 | 376 379 277 181 | 0.00019 |
1093 | 386 379 277 180 | 0.00048 |
1102 | 389 375 293 180 | 0.00010 |
1103 | 389 375 293 181 | 0.00019 |
1105 | 382 379 277 178 | 0.00357 |
1106 | 395 379 277 178 | 0.00010 |
1107 | 376 375 293 183 | 0.00010 |
1109 | 381 379 291 186 | 0.00097 |
1111 | 387 378 287 182 | 0.00010 |
1130 | 380 373 287 178 | 0.00010 |
1134 | 384 365 291 178 | 0.00019 |
1141 | 380 365 281 180 | 0.00019 |
1168 | 382 379 289 186 | 0.00010 |
1169 | 380 365 277 180 | 0.00106 |
1225 | 387 374 287 186 | 0.00010 |
1234 | 380 371 281 181 | 0.00019 |
1265 | 387 375 277 184 | 0.00010 |
1270 | 376 365 281 181 | 0.00010 |
1271 | 387 375 277 181 | 0.00019 |
1279 | 393 379 277 186 | 0.00010 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Poodle (n=5177) |
---|---|---|
2001 | 343 324 284 | 0.59967 |
2002 | 343 327 280 | 0.08557 |
2003 | 343 324 282 | 0.10402 |
2004 | 351 327 268 | 0.02917 |
2005 | 339 322 280 | 0.01594 |
2006 | 339 325 280 | 0.03438 |
2007 | 351 327 280 | 0.01661 |
2008 | 339 327 276 | 0.01487 |
2009 | 351 324 280 | 0.00763 |
2010 | 345 329 280 | 0.01120 |
2011 | 345 322 284 | 0.01990 |
2012 | 345 322 280 | 0.00715 |
2013 | 345 327 284 | 0.01062 |
2014 | 339 322 284 | 0.01999 |
2015 | 339 327 280 | 0.00415 |
2016 | 339 323 284 | 0.00328 |
2017 | 343 322 280 | 0.00212 |
2019 | 345 324 284 | 0.00010 |
2020 | 349 324 284 | 0.00019 |
2021 | 339 324 268 | 0.00367 |
2022 | 339 327 282 | 0.00048 |
2023 | 341 323 282 | 0.00212 |
2024 | 343 323 280 | 0.00058 |
2025 | 351 321 280 | 0.00164 |
2026 | 351 324 284 | 0.00097 |
2028 | 345 327 288 | 0.00058 |
2032 | 339 323 280 | 0.00048 |
2035 | 341 323 280 | 0.00010 |
2037 | 341 327 280 | 0.00048 |
2039 | 345 327 276 | 0.00058 |
2040 | 345 327 280 | 0.00010 |
2048 | 339 331 282 | 0.00019 |
2050 | 341 327 284 | 0.00010 |
2064 | 351 327 284 | 0.00097 |
2066 | 339 324 280 | 0.00010 |
2101 | 341 324 280 | 0.00019 |
2115 | 343 327 284 | 0.00010 |
Allele Frequencies
# | Locus Name | Allele | Poodle (n=5178) |
---|---|---|---|
1 | AHT121 | 92 | 0.01197 |
94 | 0.02231 | ||
96 | 0.01236 | ||
98 | 0.31788 | ||
100 | 0.08642 | ||
102 | 0.00637 | ||
104 | 0.19699 | ||
106 | 0.08217 | ||
108 | 0.17323 | ||
110 | 0.06672 | ||
112 | 0.02337 | ||
114 | 0.00019 | ||
2 | AHT137 | 131 | 0.23035 |
133 | 0.01043 | ||
135 | 0.00039 | ||
137 | 0.17549 | ||
139 | 0.00048 | ||
141 | 0.36836 | ||
143 | 0.01275 | ||
145 | 0.04732 | ||
147 | 0.05563 | ||
149 | 0.00222 | ||
151 | 0.09639 | ||
153 | 0.00019 | ||
3 | AHTH130 | 111 | 0.01694 |
117 | 0.00255 | ||
119 | 0.38504 | ||
121 | 0.13866 | ||
123 | 0.07834 | ||
125 | 0.00078 | ||
127 | 0.13141 | ||
129 | 0.21553 | ||
131 | 0.01586 | ||
133 | 0.01263 | ||
135 | 0.00225 | ||
4 | AHTh171-A | 217 | 0.00637 |
219 | 0.36694 | ||
221 | 0.23436 | ||
223 | 0.00647 | ||
225 | 0.14484 | ||
227 | 0.00917 | ||
229 | 0.04934 | ||
231 | 0.02057 | ||
233 | 0.00116 | ||
235 | 0.14059 | ||
237 | 0.02018 | ||
5 | AHTh260 | 238 | 0.57119 |
240 | 0.02850 | ||
242 | 0.00029 | ||
244 | 0.05844 | ||
246 | 0.19030 | ||
248 | 0.06520 | ||
250 | 0.03468 | ||
252 | 0.03700 | ||
254 | 0.00589 | ||
256 | 0.00850 | ||
6 | AHTk211 | 87 | 0.18308 |
89 | 0.03959 | ||
91 | 0.67343 | ||
93 | 0.00367 | ||
95 | 0.10004 | ||
97 | 0.00019 | ||
7 | AHTk253 | 280 | 0.00946 |
284 | 0.12939 | ||
286 | 0.11356 | ||
288 | 0.40711 | ||
290 | 0.21456 | ||
292 | 0.12534 | ||
296 | 0.00058 | ||
8 | C22.279 | 116 | 0.07937 |
118 | 0.39919 | ||
120 | 0.00425 | ||
124 | 0.36027 | ||
126 | 0.06769 | ||
128 | 0.02153 | ||
130 | 0.06759 | ||
134 | 0.00010 | ||
9 | FH2001 | 124 | 0.02019 |
132 | 0.42224 | ||
136 | 0.07129 | ||
140 | 0.01797 | ||
144 | 0.24179 | ||
148 | 0.21252 | ||
152 | 0.01275 | ||
158 | 0.00126 | ||
10 | FH2054 | 148 | 0.01053 |
152 | 0.03110 | ||
156 | 0.55003 | ||
160 | 0.01719 | ||
164 | 0.00290 | ||
168 | 0.29660 | ||
172 | 0.07949 | ||
176 | 0.01111 | ||
180 | 0.00106 | ||
11 | FH2848 | 230 | 0.01517 |
232 | 0.01613 | ||
234 | 0.01140 | ||
236 | 0.05323 | ||
238 | 0.13804 | ||
240 | 0.68789 | ||
242 | 0.07757 | ||
244 | 0.00019 | ||
246 | 0.00039 | ||
12 | INRA21 | 91 | 0.35409 |
93 | 0.00010 | ||
95 | 0.40295 | ||
97 | 0.04732 | ||
99 | 0.05630 | ||
101 | 0.11452 | ||
103 | 0.00763 | ||
105 | 0.01419 | ||
109 | 0.00290 | ||
13 | INU005 | 110 | 0.01941 |
120 | 0.00010 | ||
122 | 0.00058 | ||
124 | 0.51497 | ||
126 | 0.44892 | ||
128 | 0.00183 | ||
130 | 0.01149 | ||
132 | 0.00029 | ||
138 | 0.00241 | ||
14 | INU030 | 144 | 0.31837 |
146 | 0.14938 | ||
148 | 0.06499 | ||
150 | 0.08729 | ||
152 | 0.37881 | ||
154 | 0.00077 | ||
156 | 0.00029 | ||
158 | 0.00010 | ||
15 | INU055 | 208 | 0.00164 |
210 | 0.21871 | ||
212 | 0.06074 | ||
214 | 0.29616 | ||
216 | 0.36839 | ||
218 | 0.03843 | ||
220 | 0.01458 | ||
222 | 0.00135 | ||
16 | LEI004 | 85 | 0.65556 |
95 | 0.09917 | ||
97 | 0.00454 | ||
105 | 0.00077 | ||
107 | 0.20857 | ||
109 | 0.03138 | ||
17 | REN105L03 | 227 | 0.00995 |
231 | 0.27545 | ||
233 | 0.20089 | ||
235 | 0.00715 | ||
237 | 0.01497 | ||
239 | 0.01198 | ||
241 | 0.47933 | ||
243 | 0.00029 | ||
18 | REN162C04 | 200 | 0.02048 |
202 | 0.17172 | ||
204 | 0.06558 | ||
206 | 0.54636 | ||
208 | 0.09079 | ||
210 | 0.06587 | ||
212 | 0.03921 | ||
19 | REN169D01 | 202 | 0.00929 |
210 | 0.00126 | ||
212 | 0.07094 | ||
214 | 0.00097 | ||
216 | 0.40786 | ||
218 | 0.26278 | ||
220 | 0.00184 | ||
222 | 0.04897 | ||
224 | 0.17383 | ||
226 | 0.02226 | ||
20 | REN169O18 | 156 | 0.00135 |
160 | 0.03380 | ||
162 | 0.57089 | ||
164 | 0.31398 | ||
166 | 0.01536 | ||
168 | 0.02366 | ||
170 | 0.03255 | ||
172 | 0.00840 | ||
21 | REN247M23 | 266 | 0.03438 |
268 | 0.52260 | ||
270 | 0.23585 | ||
272 | 0.20012 | ||
274 | 0.00251 | ||
278 | 0.00454 | ||
22 | REN54P11 | 222 | 0.00183 |
226 | 0.26574 | ||
228 | 0.16889 | ||
230 | 0.00338 | ||
232 | 0.33420 | ||
234 | 0.21128 | ||
236 | 0.00435 | ||
238 | 0.00956 | ||
242 | 0.00077 | ||
23 | REN64E19 | 139 | 0.00222 |
143 | 0.00541 | ||
145 | 0.42410 | ||
147 | 0.24778 | ||
149 | 0.03418 | ||
153 | 0.25888 | ||
155 | 0.02742 | ||
24 | VGL0760 | 12 | 0.29737 |
13 | 0.00116 | ||
14 | 0.01468 | ||
15 | 0.00869 | ||
18 | 0.00164 | ||
19 | 0.08683 | ||
19.2 | 0.13724 | ||
20 | 0.03602 | ||
20.2 | 0.16216 | ||
21 | 0.00135 | ||
21.2 | 0.05128 | ||
22.2 | 0.01642 | ||
23.2 | 0.11010 | ||
24.2 | 0.05988 | ||
25.2 | 0.01468 | ||
26.2 | 0.00048 | ||
25 | VGL0910 | 12 | 0.00048 |
13 | 0.04780 | ||
14 | 0.01728 | ||
15 | 0.01931 | ||
15.1 | 0.01603 | ||
16 | 0.00019 | ||
16.1 | 0.00512 | ||
17.1 | 0.10525 | ||
18.1 | 0.27462 | ||
19 | 0.00010 | ||
19.1 | 0.12968 | ||
20.1 | 0.03998 | ||
21.1 | 0.27935 | ||
22 | 0.00753 | ||
22.1 | 0.02163 | ||
23 | 0.03051 | ||
23.1 | 0.00396 | ||
24 | 0.00116 | ||
26 | VGL1063 | 8 | 0.02733 |
9 | 0.00241 | ||
10 | 0.00010 | ||
11 | 0.00145 | ||
12 | 0.03467 | ||
13 | 0.15856 | ||
14 | 0.13924 | ||
15 | 0.08430 | ||
16 | 0.09946 | ||
17 | 0.03071 | ||
18 | 0.04413 | ||
19 | 0.30137 | ||
20 | 0.04249 | ||
21 | 0.02520 | ||
22 | 0.00686 | ||
23 | 0.00164 | ||
24 | 0.00010 | ||
27 | VGL1165 | 13 | 0.00010 |
14 | 0.00010 | ||
15 | 0.00676 | ||
16 | 0.04316 | ||
17 | 0.00328 | ||
18 | 0.01777 | ||
19 | 0.00946 | ||
20 | 0.00077 | ||
21 | 0.07918 | ||
22 | 0.00309 | ||
23 | 0.00270 | ||
24 | 0.01584 | ||
25 | 0.11375 | ||
25.3 | 0.00010 | ||
26 | 0.47721 | ||
27 | 0.10941 | ||
28 | 0.10941 | ||
29 | 0.00241 | ||
30 | 0.00425 | ||
31 | 0.00087 | ||
32 | 0.00029 | ||
34 | 0.00010 | ||
28 | VGL1828 | 14 | 0.03737 |
15 | 0.00048 | ||
16 | 0.04751 | ||
17 | 0.02182 | ||
18 | 0.08710 | ||
19 | 0.42835 | ||
20 | 0.33642 | ||
21 | 0.03428 | ||
22 | 0.00657 | ||
23 | 0.00010 | ||
29 | VGL2009 | 9 | 0.45124 |
10 | 0.00589 | ||
11 | 0.03525 | ||
12 | 0.04799 | ||
13 | 0.24401 | ||
14 | 0.18743 | ||
15 | 0.02800 | ||
16 | 0.00019 | ||
30 | VGL2409 | 13 | 0.03922 |
14 | 0.26265 | ||
15 | 0.18943 | ||
16 | 0.15224 | ||
17 | 0.19513 | ||
18 | 0.13727 | ||
19 | 0.02357 | ||
20 | 0.00048 | ||
31 | VGL2918 | 7 | 0.00010 |
12 | 0.00521 | ||
13 | 0.11143 | ||
14 | 0.20761 | ||
15 | 0.15827 | ||
16 | 0.04316 | ||
16.3 | 0.00145 | ||
17 | 0.00222 | ||
17.3 | 0.03283 | ||
18.3 | 0.02192 | ||
19.3 | 0.11636 | ||
20.3 | 0.11906 | ||
21.3 | 0.14195 | ||
22.3 | 0.03525 | ||
23.3 | 0.00319 | ||
32 | VGL3008 | 12 | 0.00010 |
13 | 0.01120 | ||
14 | 0.03505 | ||
15 | 0.23397 | ||
16 | 0.03776 | ||
17 | 0.50183 | ||
18 | 0.02462 | ||
18.2 | 0.00019 | ||
19 | 0.12949 | ||
20 | 0.02356 | ||
21 | 0.00212 | ||
23 | 0.00010 | ||
33 | VGL3235 | 12 | 0.15353 |
13 | 0.04886 | ||
14 | 0.15604 | ||
15 | 0.04587 | ||
16 | 0.30427 | ||
17 | 0.22132 | ||
18 | 0.06924 | ||
19 | 0.00087 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 5178 | 10.061 | 3.728 | 0.680 | 0.700 | 0.030 | |
SE | 0.641 | 0.228 | 0.017 | 0.017 | 0.003 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 5178 | 8.714 | 2.990 | 0.583 | 0.604 | 0.035 | |
SE | 1.173 | 0.465 | 0.057 | 0.059 | 0.006 |
Standard genetic assessment for individual STR loci
Poodle
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 5178 | 12 | 5.265 | 0.793 | 0.810 | 0.021 |
2 | AHT137 | 5178 | 12 | 4.265 | 0.752 | 0.766 | 0.018 |
3 | AHTH130 | 5178 | 11 | 4.201 | 0.732 | 0.762 | 0.040 |
4 | AHTh171-A | 5178 | 11 | 4.278 | 0.756 | 0.766 | 0.014 |
5 | AHTh260 | 5178 | 10 | 2.676 | 0.607 | 0.626 | 0.031 |
6 | AHTk211 | 5178 | 6 | 2.006 | 0.468 | 0.501 | 0.066 |
7 | AHTk253 | 5178 | 7 | 3.888 | 0.735 | 0.743 | 0.011 |
8 | C22.279 | 5178 | 8 | 3.278 | 0.707 | 0.695 | -0.018 |
9 | FH2001 | 5178 | 8 | 3.474 | 0.691 | 0.712 | 0.029 |
10 | FH2054 | 5178 | 9 | 2.510 | 0.598 | 0.602 | 0.006 |
11 | FH2848 | 5178 | 9 | 1.993 | 0.473 | 0.498 | 0.050 |
12 | INRA21 | 5178 | 9 | 3.262 | 0.672 | 0.693 | 0.031 |
13 | INU005 | 5178 | 9 | 2.140 | 0.510 | 0.533 | 0.043 |
14 | INU030 | 5178 | 8 | 3.584 | 0.693 | 0.721 | 0.038 |
15 | INU055 | 5178 | 8 | 3.615 | 0.712 | 0.723 | 0.016 |
16 | LEI004 | 5178 | 6 | 2.066 | 0.514 | 0.516 | 0.004 |
17 | REN105L03 | 5178 | 8 | 2.886 | 0.620 | 0.653 | 0.052 |
18 | REN162C04 | 5178 | 7 | 2.883 | 0.620 | 0.653 | 0.050 |
19 | REN169D01 | 5178 | 10 | 3.654 | 0.692 | 0.726 | 0.048 |
20 | REN169O18 | 5178 | 8 | 2.339 | 0.546 | 0.572 | 0.045 |
21 | REN247M23 | 5178 | 6 | 2.703 | 0.604 | 0.630 | 0.041 |
22 | REN54P11 | 5178 | 9 | 3.912 | 0.700 | 0.744 | 0.060 |
23 | REN64E19 | 5178 | 7 | 3.223 | 0.669 | 0.690 | 0.030 |
24 | VGL0760 | 5178 | 16 | 6.191 | 0.829 | 0.838 | 0.012 |
25 | VGL0910 | 5178 | 18 | 5.329 | 0.806 | 0.812 | 0.008 |
26 | VGL1063 | 5178 | 17 | 6.262 | 0.817 | 0.840 | 0.028 |
27 | VGL1165 | 5178 | 22 | 3.656 | 0.688 | 0.727 | 0.052 |
28 | VGL1828 | 5178 | 10 | 3.230 | 0.669 | 0.690 | 0.032 |
29 | VGL2009 | 5178 | 8 | 3.304 | 0.661 | 0.697 | 0.052 |
30 | VGL2409 | 5178 | 8 | 5.346 | 0.805 | 0.813 | 0.009 |
31 | VGL2918 | 5178 | 15 | 7.511 | 0.857 | 0.867 | 0.011 |
32 | VGL3008 | 5178 | 12 | 3.055 | 0.661 | 0.673 | 0.018 |
33 | VGL3235 | 5178 | 8 | 5.031 | 0.774 | 0.801 | 0.034 |
Standard genetic assessment for 7 STRs in the DLA region
Poodle
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 5178 | 15 | 3.445 | 0.687 | 0.710 | 0.032 |
2 | DLA I-4ACA | 5178 | 11 | 4.802 | 0.772 | 0.792 | 0.024 |
3 | DLA I-4BCT | 5178 | 6 | 2.560 | 0.587 | 0.609 | 0.037 |
4 | DLA1131 | 5178 | 9 | 4.643 | 0.758 | 0.785 | 0.034 |
5 | 5ACA | 5178 | 6 | 1.556 | 0.352 | 0.357 | 0.016 |
6 | 5ACT | 5178 | 8 | 1.831 | 0.442 | 0.454 | 0.027 |
7 | 5BCA | 5178 | 6 | 2.090 | 0.484 | 0.522 | 0.072 |