Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesSwedish Vallhund (n=283)
1006387 375 293 1800.272
1009382 377 277 1840.044
1068380 373 287 1810.359
1177395 373 277 1810.184
1178386 365 277 1860.136
1179395 375 293 1800.005

DLA Class II Haplotype Frequencies

DLA2 #STR typesSwedish Vallhund (n=283)
2007351 327 2800.277
2022339 327 2820.044
2053343 324 2800.495
2084339 323 2680.184

Allele Frequencies

#Locus NameAlleleSwedish Vallhund (n=284)
1AHT121 940.129
960.269
980.092
1000.435
1020.072
1060.004
2AHT137 1310.349
1330.023
1350.134
1370.488
1390.004
1470.004
3AHTH130 1190.137
1210.086
1270.056
1290.016
1330.002
1350.702
4AHTh171-A 2210.660
2250.141
2270.023
2290.062
2330.114
5AHTh260 2460.521
2480.313
2500.004
2540.162
6AHTk211 870.405
890.120
910.475
7AHTk253 2820.180
2860.062
2880.363
2900.107
2920.183
2940.106
8C22.279 1160.273
1180.004
1240.662
1300.062
9FH2001 1320.255
1400.009
1440.606
1480.053
1520.077
10FH2054 1480.127
1520.130
1560.657
1600.048
1640.004
1720.033
1760.002
11FH2848 2320.181
2360.046
2380.083
2400.680
2440.011
12INRA21 950.048
970.275
990.063
1010.614
13INU005 1220.060
1240.898
1260.042
14INU030 1440.195
1480.063
1500.692
1520.049
15INU055 2100.261
2120.090
2140.340
2160.310
16LEI004 850.143
950.496
970.069
1050.162
1070.130
17REN105L03 2310.134
2330.164
2350.173
2390.104
2410.426
18REN162C04 2000.254
2020.243
2040.217
2060.282
2100.005
19REN169D01 2020.218
2100.086
2160.136
2180.560
20REN169O18 1620.687
1700.308
1740.005
21REN247M23 2680.847
2720.153
22REN54P11 2260.891
2340.093
2440.016
23REN64E19 1450.058
1470.447
1490.491
1530.004
24VGL0760 120.062
140.102
150.007
20.20.317
21.20.308
22.20.009
23.20.049
24.20.146
25VGL0910 18.10.004
19.10.139
20.10.475
21.10.322
22.10.060
26VGL1063 80.025
120.129
130.176
140.104
150.433
160.005
190.042
200.077
210.009
27VGL1165 180.018
200.447
230.229
240.032
250.153
260.121
28VGL1828 150.002
160.040
170.243
190.595
200.120
29VGL2009 130.127
140.018
150.639
160.215
170.002
30VGL2409 140.215
160.438
170.342
180.004
190.002
31VGL2918 130.181
140.687
150.053
17.30.002
18.30.035
19.30.039
20.30.004
32VGL3008 160.268
170.496
180.162
190.007
200.067
33VGL3235 140.665
150.079
160.014
170.018
180.224

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Swedish VallhundMean2844.9392.5880.5700.569-0.000
 SE 0.2530.1480.0260.0260.009

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Swedish VallhundMean2843.5712.6850.6390.605-0.059
 SE 0.2750.2350.0420.0400.008

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12128463.4270.6800.7080.040
2AHT13728462.6470.5920.6220.049
3AHTH13028461.9110.5180.477-0.086
4AHTh171-A28452.1140.5180.5270.018
5AHTh26028442.5250.6200.604-0.026
6AHTk21128432.4740.6480.596-0.088
7AHTk25328464.4680.7850.776-0.012
8C22.27928441.9360.4580.4840.053
9FH200128452.2680.5630.559-0.008
10FH205428472.1380.5670.532-0.065
11FH284828451.9850.5250.496-0.057
12INRA2128442.1780.5460.541-0.009
13INU00528431.2320.1760.1880.066
14INU03028441.9110.4610.4770.032
15INU05528443.4790.7250.713-0.018
16LEI00428453.1770.6160.6850.101
17REN105L0328453.7480.7850.733-0.071
18REN162C0428454.0070.7150.7500.047
19REN169D0128442.5850.5700.6130.070
20REN169O1828431.7660.3940.4340.090
21REN247M2328421.3500.2780.259-0.072
22REN54P1128431.2460.1970.1970.001
23REN64E1928442.2490.5670.555-0.021
24VGL076028484.2830.7750.767-0.011
25VGL091028452.8350.6060.6470.064
26VGL106328493.9310.7360.7460.013
27VGL116528463.4260.7290.708-0.029
28VGL182828452.3300.5670.5710.007
29VGL200928452.1230.5600.529-0.058
30VGL240928452.8170.6870.645-0.064
31VGL291828471.9610.4720.4900.037
32VGL300828452.8660.6760.651-0.038
33VGL323528452.0010.4860.5000.029

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA28453.8610.7960.741-0.074
2DLA I-4ACA28442.5470.6270.607-0.032
3DLA I-4BCT28432.9570.7150.662-0.080
4DLA113128442.5470.6270.607-0.032
55ACA28432.6770.6550.626-0.045
65ACT28432.6210.6550.618-0.059
75BCA28431.5850.4010.369-0.087