Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=283)
1006	387 375 293 180	0.272
1009	382 377 277 184	0.044
1068	380 373 287 181	0.359
1177	395 373 277 181	0.184
1178	386 365 277 186	0.136
1179	395 375 293 180	0.005

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=283)
2007	351 327 280	0.277
2022	339 327 282	0.044
2053	343 324 280	0.495
2084	339 323 268	0.184

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=284)
1	AHT121	94	0.129
		96	0.269
		98	0.092
		100	0.435
		102	0.072
		106	0.004
2	AHT137	131	0.349
		133	0.023
		135	0.134
		137	0.488
		139	0.004
		147	0.004
3	AHTH130	119	0.137
		121	0.086
		127	0.056
		129	0.016
		133	0.002
		135	0.702
4	AHTh171-A	221	0.660
		225	0.141
		227	0.023
		229	0.062
		233	0.114
5	AHTh260	246	0.521
		248	0.313
		250	0.004
		254	0.162
6	AHTk211	87	0.405
		89	0.120
		91	0.475
7	AHTk253	282	0.180
		286	0.062
		288	0.363
		290	0.107
		292	0.183
		294	0.106
8	C22.279	116	0.273
		118	0.004
		124	0.662
		130	0.062
9	FH2001	132	0.255
		140	0.009
		144	0.606
		148	0.053
		152	0.077
10	FH2054	148	0.127
		152	0.130
		156	0.657
		160	0.048
		164	0.004
		172	0.033
		176	0.002
11	FH2848	232	0.181
		236	0.046
		238	0.083
		240	0.680
		244	0.011
12	INRA21	95	0.048
		97	0.275
		99	0.063
		101	0.614
13	INU005	122	0.060
		124	0.898
		126	0.042
14	INU030	144	0.195
		148	0.063
		150	0.692
		152	0.049
15	INU055	210	0.261
		212	0.090
		214	0.340
		216	0.310
16	LEI004	85	0.143
		95	0.496
		97	0.069
		105	0.162
		107	0.130
17	REN105L03	231	0.134
		233	0.164
		235	0.173
		239	0.104
		241	0.426
18	REN162C04	200	0.254
		202	0.243
		204	0.217
		206	0.282
		210	0.005
19	REN169D01	202	0.218
		210	0.086
		216	0.136
		218	0.560
20	REN169O18	162	0.687
		170	0.308
		174	0.005
21	REN247M23	268	0.847
21	REN247M23	272	0.153
22	REN54P11	226	0.891
		234	0.093
		244	0.016
23	REN64E19	145	0.058
		147	0.447
		149	0.491
		153	0.004
24	VGL0760	12	0.062
		14	0.102
		15	0.007
		20.2	0.317
		21.2	0.308
		22.2	0.009
		23.2	0.049
		24.2	0.146
25	VGL0910	18.1	0.004
		19.1	0.139
		20.1	0.475
		21.1	0.322
		22.1	0.060
26	VGL1063	8	0.025
		12	0.129
		13	0.176
		14	0.104
		15	0.433
		16	0.005
		19	0.042
		20	0.077
		21	0.009
27	VGL1165	18	0.018
		20	0.447
		23	0.229
		24	0.032
		25	0.153
		26	0.121
28	VGL1828	15	0.002
		16	0.040
		17	0.243
		19	0.595
		20	0.120
29	VGL2009	13	0.127
		14	0.018
		15	0.639
		16	0.215
		17	0.002
30	VGL2409	14	0.215
		16	0.438
		17	0.342
		18	0.004
		19	0.002
31	VGL2918	13	0.181
		14	0.687
		15	0.053
		17.3	0.002
		18.3	0.035
		19.3	0.039
		20.3	0.004
32	VGL3008	16	0.268
		17	0.496
		18	0.162
		19	0.007
		20	0.067
33	VGL3235	14	0.665
		15	0.079
		16	0.014
		17	0.018
		18	0.224

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Swedish Vallhund	Mean	284	4.939	2.588	0.570	0.569	-0.000
	SE		0.253	0.148	0.026	0.026	0.009

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Swedish Vallhund	Mean	284	3.571	2.685	0.639	0.605	-0.059
	SE		0.275	0.235	0.042	0.040	0.008

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	284	6	3.427	0.680	0.708	0.040
2	AHT137	284	6	2.647	0.592	0.622	0.049
3	AHTH130	284	6	1.911	0.518	0.477	-0.086
4	AHTh171-A	284	5	2.114	0.518	0.527	0.018
5	AHTh260	284	4	2.525	0.620	0.604	-0.026
6	AHTk211	284	3	2.474	0.648	0.596	-0.088
7	AHTk253	284	6	4.468	0.785	0.776	-0.012
8	C22.279	284	4	1.936	0.458	0.484	0.053
9	FH2001	284	5	2.268	0.563	0.559	-0.008
10	FH2054	284	7	2.138	0.567	0.532	-0.065
11	FH2848	284	5	1.985	0.525	0.496	-0.057
12	INRA21	284	4	2.178	0.546	0.541	-0.009
13	INU005	284	3	1.232	0.176	0.188	0.066
14	INU030	284	4	1.911	0.461	0.477	0.032
15	INU055	284	4	3.479	0.725	0.713	-0.018
16	LEI004	284	5	3.177	0.616	0.685	0.101
17	REN105L03	284	5	3.748	0.785	0.733	-0.071
18	REN162C04	284	5	4.007	0.715	0.750	0.047
19	REN169D01	284	4	2.585	0.570	0.613	0.070
20	REN169O18	284	3	1.766	0.394	0.434	0.090
21	REN247M23	284	2	1.350	0.278	0.259	-0.072
22	REN54P11	284	3	1.246	0.197	0.197	0.001
23	REN64E19	284	4	2.249	0.567	0.555	-0.021
24	VGL0760	284	8	4.283	0.775	0.767	-0.011
25	VGL0910	284	5	2.835	0.606	0.647	0.064
26	VGL1063	284	9	3.931	0.736	0.746	0.013
27	VGL1165	284	6	3.426	0.729	0.708	-0.029
28	VGL1828	284	5	2.330	0.567	0.571	0.007
29	VGL2009	284	5	2.123	0.560	0.529	-0.058
30	VGL2409	284	5	2.817	0.687	0.645	-0.064
31	VGL2918	284	7	1.961	0.472	0.490	0.037
32	VGL3008	284	5	2.866	0.676	0.651	-0.038
33	VGL3235	284	5	2.001	0.486	0.500	0.029

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	284	5	3.861	0.796	0.741	-0.074
2	DLA I-4ACA	284	4	2.547	0.627	0.607	-0.032
3	DLA I-4BCT	284	3	2.957	0.715	0.662	-0.080
4	DLA1131	284	4	2.547	0.627	0.607	-0.032
5	5ACA	284	3	2.677	0.655	0.626	-0.045
6	5ACT	284	3	2.621	0.655	0.618	-0.059
7	5BCA	284	3	1.585	0.401	0.369	-0.087

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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