Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=295)
1006	387 375 293 180	0.266
1009	382 377 277 184	0.044
1068	380 373 287 181	0.354
1177	395 373 277 181	0.188
1178	386 365 277 186	0.141
1179	395 375 293 180	0.005
1259	387 373 287 181	0.002

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=295)
2007	351 327 280	0.271
2022	339 327 282	0.044
2053	343 324 280	0.497
2084	339 323 268	0.188

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=296)
1	AHT121	94	0.128
		96	0.269
		98	0.090
		100	0.439
		102	0.071
		106	0.003
2	AHT137	131	0.346
		133	0.022
		135	0.133
		137	0.492
		139	0.003
		147	0.003
3	AHTH130	119	0.135
		121	0.084
		127	0.057
		129	0.015
		133	0.002
		135	0.706
4	AHTh171-A	221	0.659
		225	0.149
		227	0.024
		229	0.059
		233	0.110
5	AHTh260	246	0.527
		248	0.311
		250	0.005
		254	0.157
6	AHTk211	87	0.405
		89	0.123
		91	0.471
7	AHTk253	282	0.182
		286	0.063
		288	0.358
		290	0.108
		292	0.184
		294	0.105
8	C22.279	116	0.272
		118	0.003
		124	0.662
		130	0.063
9	FH2001	132	0.262
		140	0.008
		144	0.603
		148	0.052
		152	0.074
10	FH2054	148	0.128
		152	0.127
		156	0.660
		160	0.047
		164	0.003
		172	0.032
		176	0.002
11	FH2848	232	0.184
		236	0.046
		238	0.083
		240	0.677
		244	0.010
12	INRA21	95	0.047
		97	0.280
		99	0.064
		101	0.608
13	INU005	122	0.057
		124	0.897
		126	0.046
14	INU030	144	0.193
		148	0.063
		150	0.693
		152	0.052
15	INU055	210	0.260
		212	0.088
		214	0.341
		216	0.311
16	LEI004	85	0.144
		95	0.498
		97	0.068
		105	0.162
		107	0.128
17	REN105L03	231	0.135
		233	0.167
		235	0.171
		239	0.105
		241	0.422
18	REN162C04	200	0.252
		202	0.238
		204	0.220
		206	0.285
		210	0.005
19	REN169D01	202	0.221
		210	0.088
		216	0.137
		218	0.554
20	REN169O18	162	0.688
		170	0.307
		174	0.005
21	REN247M23	268	0.840
21	REN247M23	272	0.160
22	REN54P11	226	0.883
		234	0.100
		244	0.017
23	REN64E19	145	0.057
		147	0.448
		149	0.492
		153	0.003
24	VGL0760	12	0.061
		14	0.101
		15	0.007
		20.2	0.314
		21.2	0.314
		22.2	0.008
		23.2	0.051
		24.2	0.144
25	VGL0910	18.1	0.003
		19.1	0.135
		20.1	0.481
		21.1	0.323
		22.1	0.057
26	VGL1063	8	0.024
		12	0.127
		13	0.176
		14	0.103
		15	0.439
		16	0.005
		19	0.041
		20	0.076
		21	0.010
27	VGL1165	18	0.019
		20	0.449
		23	0.230
		24	0.030
		25	0.154
		26	0.118
28	VGL1828	15	0.002
		16	0.041
		17	0.248
		19	0.588
		20	0.122
29	VGL2009	13	0.132
		14	0.017
		15	0.633
		16	0.216
		17	0.002
30	VGL2409	14	0.215
		16	0.439
		17	0.341
		18	0.003
		19	0.002
31	VGL2918	13	0.179
		14	0.686
		15	0.051
		17.3	0.002
		18.3	0.041
		19.3	0.039
		20.3	0.003
32	VGL3008	16	0.258
		17	0.503
		18	0.160
		19	0.007
		20	0.071
33	VGL3235	14	0.662
		15	0.079
		16	0.014
		17	0.017
		18	0.228

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Swedish Vallhund	Mean	296	4.939	2.587	0.570	0.570	0.002
	SE		0.253	0.147	0.026	0.025	0.009

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Swedish Vallhund	Mean	296	3.571	2.691	0.637	0.606	-0.051
	SE		0.275	0.238	0.042	0.039	0.008

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	296	6	3.395	0.682	0.705	0.033
2	AHT137	296	6	2.633	0.595	0.620	0.041
3	AHTH130	296	6	1.896	0.514	0.473	-0.087
4	AHTh171-A	296	5	2.118	0.510	0.528	0.033
5	AHTh260	296	4	2.506	0.615	0.601	-0.023
6	AHTk211	296	3	2.490	0.645	0.598	-0.078
7	AHTk253	296	6	4.505	0.791	0.778	-0.016
8	C22.279	296	4	1.937	0.449	0.484	0.071
9	FH2001	296	5	2.270	0.561	0.559	-0.002
10	FH2054	296	7	2.118	0.564	0.528	-0.069
11	FH2848	296	5	1.993	0.517	0.498	-0.037
12	INRA21	296	4	2.199	0.547	0.545	-0.004
13	INU005	296	3	1.235	0.179	0.190	0.058
14	INU030	296	4	1.911	0.463	0.477	0.029
15	INU055	296	4	3.467	0.726	0.712	-0.021
16	LEI004	296	5	3.162	0.622	0.684	0.091
17	REN105L03	296	5	3.779	0.777	0.735	-0.057
18	REN162C04	296	5	4.003	0.720	0.750	0.041
19	REN169D01	296	4	2.615	0.581	0.618	0.059
20	REN169O18	296	3	1.763	0.402	0.433	0.071
21	REN247M23	296	2	1.369	0.280	0.269	-0.041
22	REN54P11	296	3	1.265	0.193	0.209	0.080
23	REN64E19	296	4	2.246	0.574	0.555	-0.035
24	VGL0760	296	8	4.261	0.774	0.765	-0.011
25	VGL0910	296	5	2.798	0.611	0.643	0.048
26	VGL1063	296	9	3.868	0.726	0.741	0.020
27	VGL1165	296	6	3.407	0.723	0.706	-0.023
28	VGL1828	296	5	2.360	0.571	0.576	0.009
29	VGL2009	296	5	2.148	0.571	0.534	-0.068
30	VGL2409	296	5	2.814	0.682	0.645	-0.059
31	VGL2918	296	7	1.968	0.473	0.492	0.038
32	VGL3008	296	5	2.849	0.672	0.649	-0.036
33	VGL3235	296	5	2.011	0.490	0.503	0.026

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	296	5	3.900	0.794	0.744	-0.068
2	DLA I-4ACA	296	4	2.549	0.625	0.608	-0.029
3	DLA I-4BCT	296	3	2.946	0.716	0.661	-0.084
4	DLA1131	296	4	2.549	0.625	0.608	-0.029
5	5ACA	296	3	2.674	0.649	0.626	-0.036
6	5ACT	296	3	2.624	0.649	0.619	-0.048
7	5BCA	296	3	1.598	0.399	0.374	-0.065

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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