Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=557)
1006	387 375 293 180	0.2361
1009	382 377 277 184	0.0557
1068	380 373 287 181	0.3573
1177	395 373 277 181	0.1724
1178	386 365 277 186	0.1616
1179	395 375 293 180	0.0027
1259	387 373 287 181	0.0144

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=557)
2007	351 327 280	0.2388
2022	339 327 282	0.0557
2053	343 324 280	0.5332
2066	339 324 280	0.0009
2084	339 323 268	0.1715

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=558)
1	AHT121	94	0.1228
		96	0.3038
		98	0.0717
		100	0.4283
		102	0.0690
		106	0.0045
2	AHT137	131	0.3253
		133	0.0206
		135	0.1237
		137	0.5260
		139	0.0018
		147	0.0027
3	AHTH130	119	0.1290
		121	0.0860
		127	0.0618
		129	0.0134
		131	0.0009
		133	0.0018
		135	0.7070
4	AHTh171-A	221	0.6568
		225	0.1532
		227	0.0287
		229	0.0573
		233	0.1039
5	AHTh260	246	0.5323
		248	0.3047
		250	0.0036
		254	0.1595
6	AHTk211	87	0.4194
		89	0.1290
		91	0.4516
7	AHTk253	282	0.1962
		286	0.0645
		288	0.3611
		290	0.0995
		292	0.1864
		294	0.0923
8	C22.279	116	0.3145
		118	0.0018
		124	0.6299
		130	0.0538
9	FH2001	132	0.2428
		140	0.0063
		144	0.6138
		148	0.0735
		152	0.0636
10	FH2054	148	0.1353
		152	0.1317
		156	0.6353
		160	0.0448
		164	0.0036
		172	0.0484
		176	0.0009
11	FH2848	232	0.1595
		236	0.0349
		238	0.1120
		240	0.6792
		244	0.0143
12	INRA21	95	0.0376
		97	0.2384
		99	0.0556
		101	0.6685
13	INU005	122	0.0484
		124	0.8987
		126	0.0529
14	INU030	144	0.2052
		148	0.0448
		150	0.6980
		152	0.0520
15	INU055	210	0.2760
		212	0.0959
		214	0.3530
		216	0.2751
16	LEI004	85	0.1353
		95	0.5305
		97	0.0573
		105	0.1523
		107	0.1246
17	REN105L03	231	0.1281
		233	0.1998
		235	0.1676
		239	0.0968
		241	0.4077
18	REN162C04	200	0.2339
		202	0.2796
		204	0.2097
		206	0.2733
		210	0.0036
19	REN169D01	202	0.2527
		210	0.1039
		216	0.1523
		218	0.4910
20	REN169O18	162	0.6505
		170	0.3450
		174	0.0045
21	REN247M23	268	0.8674
21	REN247M23	272	0.1326
22	REN54P11	226	0.8961
		234	0.0869
		244	0.0170
23	REN64E19	145	0.0771
		147	0.4471
		149	0.4740
		153	0.0018
24	VGL0760	12	0.0735
		14	0.1048
		15	0.0036
		20.2	0.2948
		21.2	0.2948
		22.2	0.0072
		23.2	0.0520
		24.2	0.1694
25	VGL0910	18.1	0.0018
		19.1	0.1398
		20.1	0.4552
		21.1	0.3477
		22.1	0.0538
		23.1	0.0018
26	VGL1063	8	0.0197
		12	0.1228
		13	0.1720
		14	0.0923
		15	0.4543
		16	0.0099
		19	0.0305
		20	0.0726
		21	0.0260
27	VGL1165	18	0.0152
		20	0.4400
		22	0.0009
		23	0.2733
		24	0.0278
		25	0.1496
		26	0.0932
28	VGL1828	15	0.0009
		16	0.0493
		17	0.2357
		18	0.0009
		19	0.6111
		20	0.1022
29	VGL2009	13	0.1228
		14	0.0179
		15	0.6604
		16	0.1944
		17	0.0045
30	VGL2409	14	0.2518
		15	0.0018
		16	0.4471
		17	0.2966
		18	0.0018
		19	0.0009
31	VGL2918	13	0.2052
		14	0.6703
		15	0.0394
		17.3	0.0009
		18.3	0.0457
		19.3	0.0358
		20.3	0.0027
32	VGL3008	16	0.2500
		17	0.4937
		18	0.1837
		19	0.0125
		20	0.0600
33	VGL3235	14	0.6013
		15	0.0851
		16	0.0081
		17	0.0125
		18	0.2930

Standard genetic assessment based on 33 autosomal STR loci

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	558	5.091	2.590	0.564	0.569	0.010
	SE		0.269	0.147	0.026	0.026	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	558	3.571	2.675	0.622	0.602	-0.034
	SE		0.275	0.248	0.042	0.040	0.009

Standard genetic assessment for individual STR loci

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	558	6	3.325	0.663	0.699	0.052
2	AHT137	558	6	2.511	0.561	0.602	0.068
3	AHTH130	558	7	1.894	0.502	0.472	-0.063
4	AHTh171-A	558	5	2.129	0.538	0.530	-0.014
5	AHTh260	558	4	2.490	0.600	0.598	-0.003
6	AHTk211	558	3	2.522	0.616	0.604	-0.021
7	AHTk253	558	6	4.420	0.799	0.774	-0.033
8	C22.279	558	4	2.006	0.477	0.501	0.049
9	FH2001	558	5	2.246	0.545	0.555	0.018
10	FH2054	558	7	2.254	0.597	0.556	-0.073
11	FH2848	558	5	1.997	0.496	0.499	0.006
12	INRA21	558	4	1.968	0.491	0.492	0.002
13	INU005	558	3	1.230	0.174	0.187	0.071
14	INU030	558	4	1.872	0.471	0.466	-0.012
15	INU055	558	4	3.500	0.695	0.714	0.027
16	LEI004	558	5	2.926	0.622	0.658	0.055
17	REN105L03	558	5	3.846	0.771	0.740	-0.041
18	REN162C04	558	5	3.976	0.715	0.748	0.045
19	REN169D01	558	4	2.950	0.634	0.661	0.040
20	REN169O18	558	3	1.844	0.439	0.458	0.041
21	REN247M23	558	2	1.299	0.229	0.230	0.003
22	REN54P11	558	3	1.233	0.183	0.189	0.034
23	REN64E19	558	4	2.323	0.590	0.569	-0.035
24	VGL0760	558	8	4.512	0.772	0.778	0.008
25	VGL0910	558	6	2.853	0.625	0.649	0.037
26	VGL1063	558	9	3.746	0.738	0.733	-0.007
27	VGL1165	558	7	3.330	0.722	0.700	-0.032
28	VGL1828	558	6	2.263	0.547	0.558	0.021
29	VGL2009	558	5	2.044	0.523	0.511	-0.025
30	VGL2409	558	6	2.847	0.636	0.649	0.019
31	VGL2918	558	7	2.015	0.496	0.504	0.015
32	VGL3008	558	5	2.909	0.665	0.656	-0.013
33	VGL3235	558	5	2.199	0.493	0.545	0.096

Standard genetic assessment for 7 STRs in the DLA region

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	558	5	3.996	0.787	0.750	-0.049
2	DLA I-4ACA	558	4	2.613	0.620	0.617	-0.005
3	DLA I-4BCT	558	3	2.882	0.699	0.653	-0.070
4	DLA1131	558	4	2.613	0.620	0.617	-0.005
5	5ACA	558	3	2.543	0.625	0.607	-0.031
6	5ACT	558	3	2.493	0.616	0.599	-0.030
7	5BCA	558	3	1.589	0.389	0.371	-0.049

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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