Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesSwedish Vallhund (n=295)
1006387 375 293 1800.266
1009382 377 277 1840.044
1068380 373 287 1810.354
1177395 373 277 1810.188
1178386 365 277 1860.141
1179395 375 293 1800.005
1259387 373 287 1810.002

DLA Class II Haplotype Frequencies

DLA2 #STR typesSwedish Vallhund (n=295)
2007351 327 2800.271
2022339 327 2820.044
2053343 324 2800.497
2084339 323 2680.188

Allele Frequencies

#Locus NameAlleleSwedish Vallhund (n=296)
1AHT121 940.128
960.269
980.090
1000.439
1020.071
1060.003
2AHT137 1310.346
1330.022
1350.133
1370.492
1390.003
1470.003
3AHTH130 1190.135
1210.084
1270.057
1290.015
1330.002
1350.706
4AHTh171-A 2210.659
2250.149
2270.024
2290.059
2330.110
5AHTh260 2460.527
2480.311
2500.005
2540.157
6AHTk211 870.405
890.123
910.471
7AHTk253 2820.182
2860.063
2880.358
2900.108
2920.184
2940.105
8C22.279 1160.272
1180.003
1240.662
1300.063
9FH2001 1320.262
1400.008
1440.603
1480.052
1520.074
10FH2054 1480.128
1520.127
1560.660
1600.047
1640.003
1720.032
1760.002
11FH2848 2320.184
2360.046
2380.083
2400.677
2440.010
12INRA21 950.047
970.280
990.064
1010.608
13INU005 1220.057
1240.897
1260.046
14INU030 1440.193
1480.063
1500.693
1520.052
15INU055 2100.260
2120.088
2140.341
2160.311
16LEI004 850.144
950.498
970.068
1050.162
1070.128
17REN105L03 2310.135
2330.167
2350.171
2390.105
2410.422
18REN162C04 2000.252
2020.238
2040.220
2060.285
2100.005
19REN169D01 2020.221
2100.088
2160.137
2180.554
20REN169O18 1620.688
1700.307
1740.005
21REN247M23 2680.840
2720.160
22REN54P11 2260.883
2340.100
2440.017
23REN64E19 1450.057
1470.448
1490.492
1530.003
24VGL0760 120.061
140.101
150.007
20.20.314
21.20.314
22.20.008
23.20.051
24.20.144
25VGL0910 18.10.003
19.10.135
20.10.481
21.10.323
22.10.057
26VGL1063 80.024
120.127
130.176
140.103
150.439
160.005
190.041
200.076
210.010
27VGL1165 180.019
200.449
230.230
240.030
250.154
260.118
28VGL1828 150.002
160.041
170.248
190.588
200.122
29VGL2009 130.132
140.017
150.633
160.216
170.002
30VGL2409 140.215
160.439
170.341
180.003
190.002
31VGL2918 130.179
140.686
150.051
17.30.002
18.30.041
19.30.039
20.30.003
32VGL3008 160.258
170.503
180.160
190.007
200.071
33VGL3235 140.662
150.079
160.014
170.017
180.228

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Swedish VallhundMean2964.9392.5870.5700.5700.002
 SE 0.2530.1470.0260.0250.009

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Swedish VallhundMean2963.5712.6910.6370.606-0.051
 SE 0.2750.2380.0420.0390.008

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12129663.3950.6820.7050.033
2AHT13729662.6330.5950.6200.041
3AHTH13029661.8960.5140.473-0.087
4AHTh171-A29652.1180.5100.5280.033
5AHTh26029642.5060.6150.601-0.023
6AHTk21129632.4900.6450.598-0.078
7AHTk25329664.5050.7910.778-0.016
8C22.27929641.9370.4490.4840.071
9FH200129652.2700.5610.559-0.002
10FH205429672.1180.5640.528-0.069
11FH284829651.9930.5170.498-0.037
12INRA2129642.1990.5470.545-0.004
13INU00529631.2350.1790.1900.058
14INU03029641.9110.4630.4770.029
15INU05529643.4670.7260.712-0.021
16LEI00429653.1620.6220.6840.091
17REN105L0329653.7790.7770.735-0.057
18REN162C0429654.0030.7200.7500.041
19REN169D0129642.6150.5810.6180.059
20REN169O1829631.7630.4020.4330.071
21REN247M2329621.3690.2800.269-0.041
22REN54P1129631.2650.1930.2090.080
23REN64E1929642.2460.5740.555-0.035
24VGL076029684.2610.7740.765-0.011
25VGL091029652.7980.6110.6430.048
26VGL106329693.8680.7260.7410.020
27VGL116529663.4070.7230.706-0.023
28VGL182829652.3600.5710.5760.009
29VGL200929652.1480.5710.534-0.068
30VGL240929652.8140.6820.645-0.059
31VGL291829671.9680.4730.4920.038
32VGL300829652.8490.6720.649-0.036
33VGL323529652.0110.4900.5030.026

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA29653.9000.7940.744-0.068
2DLA I-4ACA29642.5490.6250.608-0.029
3DLA I-4BCT29632.9460.7160.661-0.084
4DLA113129642.5490.6250.608-0.029
55ACA29632.6740.6490.626-0.036
65ACT29632.6240.6490.619-0.048
75BCA29631.5980.3990.374-0.065