Statistics and Breed-wide Allele Frequency - Whippet

Updated May 17, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesWhippet (n=77)
1002380 365 281 1810.045
1008386 373 289 1820.058
1012388 369 289 1880.052
1016382 371 277 1780.104
1040380 371 277 1860.078
1045376 371 277 1860.006
1054382 379 277 1840.006
1056386 373 289 1900.091
1058387 378 287 1860.117
1066376 375 277 1780.188
1104386 373 289 1860.149
1162386 373 289 1810.013
1208386 373 277 1810.032
1209386 378 287 1860.026
1247376 373 289 1900.006
1248386 365 281 1810.019
1249388 379 289 1900.006

DLA Class II Haplotype Frequencies

DLA2 #STR typesWhippet (n=77)
2001343 324 2840.065
2003343 324 2820.117
2006339 325 2800.032
2017343 322 2800.266
2028345 327 2880.078
2031339 322 2820.104
2033339 323 2820.143
2048339 331 2820.188
2062345 327 2820.006

Allele Frequencies

#Locus NameAlleleWhippet (n=77)
1AHT121 940.039
960.175
980.422
1000.162
1040.052
1060.104
1100.045
2AHT137 1310.299
1330.045
1370.455
1410.026
1470.143
1490.013
1510.019
3AHTH130 1190.026
1210.214
1270.234
1310.461
1330.058
1350.006
4AHTh171-A 2190.013
2250.006
2270.208
2290.734
2370.039
5AHTh260 2380.019
2400.091
2420.013
2440.422
2460.260
2480.026
2500.091
2520.058
2540.019
6AHTk211 870.662
890.149
910.149
950.039
7AHTk253 2860.045
2880.221
2900.481
2920.253
8C22.279 1160.357
1180.390
1200.071
1240.117
1260.026
1300.039
9FH2001 1320.117
1360.013
1400.006
1440.597
1480.266
10FH2054 1480.110
1520.110
1560.448
1600.052
1640.169
1680.104
1720.006
11FH2848 2280.019
2300.188
2320.006
2360.065
2380.110
2400.279
2420.208
2440.123
12INRA21 950.494
970.006
990.227
1010.273
13INU005 1100.019
1240.526
1260.286
1300.006
1320.162
14INU030 1440.110
1480.091
1500.792
1520.006
15INU055 2080.026
2100.734
2140.156
2180.084
16LEI004 950.617
970.006
1050.045
1070.325
1090.006
17REN105L03 2290.214
2330.526
2350.130
2370.039
2390.006
2410.019
2430.026
2450.039
18REN162C04 2020.266
2060.734
19REN169D01 2020.071
2120.669
2140.026
2160.208
2180.026
20REN169O18 1620.149
1640.156
1660.442
1680.013
1700.240
21REN247M23 2680.571
2700.175
2720.175
2780.078
22REN54P11 2220.519
2280.071
2320.032
2340.039
2360.260
2380.078
23REN64E19 1390.474
1430.006
1450.338
1470.175
1490.006
24VGL0760 18.20.039
19.20.006
20.20.292
21.20.065
22.20.175
23.20.409
24.20.013
25VGL0910 130.221
150.065
16.10.006
17.10.344
18.10.045
19.10.318
26VGL1063 80.318
90.052
110.422
120.013
140.104
150.071
160.013
180.006
27VGL1165 180.156
190.026
200.097
210.013
220.065
250.260
260.065
270.019
280.013
290.058
300.149
310.065
320.013
28VGL1828 150.091
160.208
170.078
180.032
190.260
200.247
210.032
220.052
29VGL2009 90.182
120.006
130.364
140.136
150.312
30VGL2409 130.110
150.286
160.013
170.474
180.110
190.006
31VGL2918 120.078
130.130
13.30.006
140.143
150.026
160.006
17.30.136
18.30.019
19.30.149
20.30.214
21.30.013
22.30.071
23.30.006
32VGL3008 150.091
160.013
170.351
180.455
190.084
200.006
33VGL3235 130.078
140.591
150.026
190.045
200.039
210.195
220.019
230.006

Standard genetic assessment based on 33 autosomal STR loci

Whippet

  NNaNeHoHeF
Mean776.2123.2130.6280.6430.029
 SE 0.4040.2320.0260.0220.020

Standard genetic assessment based on 7 STRs in the DLA region

Whippet

  NNaNeHoHeF
Mean775.2863.5200.6790.6960.027
 SE 0.5610.3220.0420.0310.032

Standard genetic assessment for individual STR loci

Whippet

#LocusNNaNeHoHeF
1AHT1217773.9630.8050.748-0.077
2AHT1377773.1300.5840.6800.141
3AHTH1307763.1520.6490.6830.049
4AHTh171-A7751.7140.2340.4170.439
5AHTh2607793.7430.7660.733-0.046
6AHTk2117742.0630.4420.5150.143
7AHTk2537742.8910.6750.654-0.032
8C22.2797763.3300.7660.700-0.095
9FH20017752.2640.4680.5580.163
10FH20547773.7430.7010.7330.043
11FH28487785.3010.8180.811-0.008
12INRA217742.7050.5840.6300.073
13INU0057752.5970.6100.6150.007
14INU0307741.5430.3510.3520.004
15INU0557741.7530.3770.4290.123
16LEI0047752.0490.6100.512-0.192
17REN105L037782.9110.6100.6560.070
18REN162C047721.6410.4550.391-0.163
19REN169D017752.0120.4290.5030.148
20REN169O187753.3390.6620.7010.055
21REN247M237742.5380.5840.6060.035
22REN54P117762.8480.6360.6490.019
23REN64E197752.7060.5450.6300.135
24VGL07607773.4550.7660.711-0.078
25VGL09107763.6400.7400.725-0.021
26VGL10637783.3520.6230.7020.112
27VGL116577137.0840.8570.8590.002
28VGL18287785.2450.7660.8090.053
29VGL20097753.5580.6880.7190.043
30VGL24097763.0220.7790.669-0.165
31VGL291877137.3200.8700.863-0.008
32VGL30087762.8970.6620.655-0.011
33VGL32357782.5130.6100.602-0.014

Standard genetic assessment for 7 STRs in the DLA region

Whippet

#LocusNNaNeHoHeF
1DLA I-3CCA7764.2230.7920.763-0.038
2DLA I-4ACA7774.5170.8050.779-0.034
3DLA I-4BCT7742.9480.5710.6610.135
4DLA11317773.9010.6360.7440.144
55ACA7732.3450.5190.5740.094
65ACT7764.2720.8050.766-0.051
75BCA7742.4310.6230.589-0.059