Statistics and Breed-wide Allele Frequency - Whippet

Updated Apr 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Whippet (n=110)
1002	380 365 281 181	0.086
1008	386 373 289 182	0.045
1012	388 369 289 188	0.036
1016	382 371 277 178	0.105
1033	382 379 277 181	0.005
1040	380 371 277 186	0.086
1045	376 371 277 186	0.005
1054	382 379 277 184	0.005
1056	386 373 289 190	0.068
1058	387 378 287 186	0.086
1066	376 375 277 178	0.214
1104	386 373 289 186	0.155
1142	376 379 277 180	0.005
1162	386 373 289 181	0.009
1208	386 373 277 181	0.050
1209	386 378 287 186	0.018
1247	376 373 289 190	0.005
1248	386 365 281 181	0.014
1249	388 379 289 190	0.005

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Whippet (n=110)
2001	343 324 284	0.100
2003	343 324 282	0.086
2006	339 325 280	0.050
2017	343 322 280	0.241
2018	339 324 284	0.005
2028	345 327 288	0.086
2031	339 322 282	0.105
2033	339 323 282	0.105
2037	341 327 280	0.005
2048	339 331 282	0.214
2062	345 327 282	0.005

Allele Frequencies

#	Locus Name	Allele	Whippet (n=111)
1	AHT121	94	0.072
		96	0.149
		98	0.369
		100	0.185
		104	0.081
		106	0.113
		110	0.032
2	AHT137	131	0.284
		133	0.032
		137	0.495
		141	0.032
		147	0.126
		149	0.009
		151	0.023
3	AHTH130	119	0.023
		121	0.191
		127	0.282
		131	0.436
		133	0.064
		135	0.005
4	AHTh171-A	219	0.014
		225	0.005
		227	0.270
		229	0.685
		237	0.027
5	AHTh260	238	0.014
		240	0.117
		242	0.018
		244	0.464
		246	0.225
		248	0.023
		250	0.072
		252	0.054
		254	0.014
6	AHTk211	87	0.644
		89	0.153
		91	0.126
		95	0.077
7	AHTk253	286	0.032
		288	0.275
		290	0.450
		292	0.243
8	C22.279	116	0.324
		118	0.423
		120	0.050
		124	0.131
		126	0.045
		130	0.027
9	FH2001	132	0.095
		136	0.027
		140	0.027
		144	0.599
		148	0.252
10	FH2054	148	0.077
		152	0.158
		156	0.428
		160	0.059
		164	0.189
		168	0.086
		172	0.005
11	FH2848	228	0.018
		230	0.203
		232	0.005
		236	0.050
		238	0.122
		240	0.293
		242	0.198
		244	0.113
12	INRA21	95	0.523
		97	0.005
		99	0.225
		101	0.248
13	INU005	110	0.014
		124	0.541
		126	0.288
		130	0.005
		132	0.153
14	INU030	144	0.113
		148	0.090
		150	0.784
		152	0.014
15	INU055	208	0.018
		210	0.748
		214	0.167
		218	0.068
16	LEI004	95	0.626
		97	0.005
		105	0.050
		107	0.315
		109	0.005
17	REN105L03	229	0.218
		233	0.500
		235	0.145
		237	0.027
		239	0.009
		241	0.014
		243	0.055
		245	0.032
18	REN162C04	202	0.288
18	REN162C04	206	0.712
19	REN169D01	202	0.077
		210	0.032
		212	0.632
		214	0.045
		216	0.191
		218	0.023
20	REN169O18	162	0.209
		164	0.136
		166	0.382
		168	0.018
		170	0.255
21	REN247M23	268	0.555
		270	0.173
		272	0.214
		278	0.059
22	REN54P11	222	0.495
		226	0.005
		228	0.054
		232	0.045
		234	0.041
		236	0.279
		238	0.081
23	REN64E19	139	0.473
		143	0.005
		145	0.324
		147	0.189
		149	0.009
24	VGL0760	18.2	0.063
		19.2	0.005
		20.2	0.270
		21.2	0.059
		22.2	0.194
		23.2	0.401
		24.2	0.009
25	VGL0910	13	0.185
		14	0.005
		15	0.045
		16.1	0.009
		17.1	0.347
		18.1	0.032
		19.1	0.378
26	VGL1063	8	0.356
		9	0.050
		11	0.369
		12	0.036
		13	0.018
		14	0.099
		15	0.054
		16	0.014
		18	0.005
27	VGL1165	18	0.176
		19	0.036
		20	0.090
		21	0.009
		22	0.063
		25	0.234
		26	0.113
		27	0.023
		28	0.014
		29	0.041
		30	0.140
		31	0.045
		32	0.018
28	VGL1828	15	0.099
		16	0.207
		17	0.108
		18	0.032
		19	0.257
		20	0.207
		21	0.054
		22	0.036
29	VGL2009	9	0.180
		12	0.009
		13	0.378
		14	0.158
		15	0.275
30	VGL2409	13	0.108
		15	0.306
		16	0.014
		17	0.437
		18	0.131
		19	0.005
31	VGL2918	12	0.054
		13	0.104
		13.3	0.005
		14	0.149
		15	0.045
		16	0.005
		17.3	0.140
		18.3	0.014
		19.3	0.162
		20.3	0.230
		21.3	0.014
		22.3	0.077
		23.3	0.005
32	VGL3008	14	0.005
		15	0.095
		16	0.014
		17	0.315
		18	0.509
		19	0.059
		20	0.005
33	VGL3235	13	0.054
		14	0.568
		15	0.018
		19	0.041
		20	0.059
		21	0.243
		22	0.014
		23	0.005

Standard genetic assessment based on 33 autosomal STR loci

Whippet

		N	Na	Ne	Ho	He	F
	Mean	111	6.364	3.259	0.633	0.649	0.026
	SE		0.408	0.234	0.023	0.021	0.016

Standard genetic assessment based on 7 STRs in the DLA region

Whippet

		N	Na	Ne	Ho	He	F
	Mean	111	5.571	3.595	0.701	0.704	0.007
	SE		0.566	0.322	0.040	0.029	0.026

Standard genetic assessment for individual STR loci

Whippet

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	111	7	4.585	0.793	0.782	-0.014
2	AHT137	111	7	2.902	0.568	0.655	0.134
3	AHTH130	111	6	3.217	0.673	0.689	0.024
4	AHTh171-A	111	5	1.842	0.324	0.457	0.291
5	AHTh260	111	9	3.460	0.703	0.711	0.012
6	AHTk211	111	4	2.173	0.486	0.540	0.099
7	AHTk253	111	4	2.954	0.622	0.661	0.060
8	C22.279	111	6	3.260	0.712	0.693	-0.027
9	FH2001	111	5	2.310	0.550	0.567	0.031
10	FH2054	111	7	3.840	0.694	0.740	0.062
11	FH2848	111	8	5.092	0.802	0.804	0.002
12	INRA21	111	4	2.596	0.613	0.615	0.004
13	INU005	111	5	2.507	0.658	0.601	-0.094
14	INU030	111	4	1.574	0.342	0.365	0.061
15	INU055	111	4	1.690	0.342	0.408	0.161
16	LEI004	111	5	2.024	0.604	0.506	-0.193
17	REN105L03	111	8	3.089	0.645	0.676	0.046
18	REN162C04	111	2	1.696	0.486	0.410	-0.186
19	REN169D01	111	6	2.246	0.509	0.555	0.082
20	REN169O18	111	5	3.660	0.700	0.727	0.037
21	REN247M23	111	4	2.587	0.573	0.614	0.066
22	REN54P11	111	7	2.970	0.649	0.663	0.022
23	REN64E19	111	5	2.741	0.559	0.635	0.121
24	VGL0760	111	7	3.587	0.775	0.721	-0.074
25	VGL0910	111	7	3.326	0.694	0.699	0.008
26	VGL1063	111	9	3.570	0.613	0.720	0.149
27	VGL1165	111	13	7.349	0.865	0.864	-0.001
28	VGL1828	111	8	5.602	0.775	0.821	0.057
29	VGL2009	111	5	3.622	0.685	0.724	0.054
30	VGL2409	111	6	3.188	0.721	0.686	-0.050
31	VGL2918	111	13	7.011	0.829	0.857	0.033
32	VGL3008	111	7	2.695	0.649	0.629	-0.031
33	VGL3235	111	8	2.565	0.667	0.610	-0.093

Standard genetic assessment for 7 STRs in the DLA region

Whippet

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	111	6	4.301	0.800	0.768	-0.042
2	DLA I-4ACA	111	7	4.597	0.820	0.782	-0.048
3	DLA I-4BCT	111	4	2.862	0.577	0.651	0.114
4	DLA1131	111	8	3.864	0.676	0.741	0.088
5	5ACA	111	4	2.389	0.555	0.581	0.046
6	5ACT	111	6	4.445	0.820	0.775	-0.058
7	5BCA	111	4	2.706	0.664	0.630	-0.053

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Whippet

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Whippet

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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