Statistics and Breed-wide Allele Frequency - Whippet

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesWhippet (n=66)
1002380 365 281 1810.038
1008386 373 289 1820.068
1012388 369 289 1880.061
1016382 371 277 1780.098
1040380 371 277 1860.061
1045376 371 277 1860.008
1054382 379 277 1840.008
1056386 373 289 1900.106
1058387 378 287 1860.129
1066376 375 277 1780.197
1104386 373 289 1860.114
1162386 373 289 1810.008
1208386 373 277 1810.038
1209386 378 287 1860.030
1247376 373 289 1900.008
1248386 365 281 1810.023
1249388 379 289 1900.008

DLA Class II Haplotype Frequencies

DLA2 #STR typesWhippet (n=66)
2001343 324 2840.061
2003343 324 2820.136
2006339 325 2800.030
2017343 322 2800.250
2028345 327 2880.061
2031339 322 2820.098
2033339 323 2820.159
2048339 331 2820.197
2062345 327 2820.008

Allele Frequencies

#Locus NameAlleleWhippet (n=66)
1AHT121 940.038
960.174
980.439
1000.114
1040.061
1060.121
1100.053
2AHT137 1310.333
1330.053
1370.447
1410.023
1470.114
1490.015
1510.015
3AHTH130 1190.023
1210.189
1270.265
1310.455
1330.061
1350.008
4AHTh171-A 2190.015
2250.008
2270.189
2290.750
2370.038
5AHTh260 2380.015
2400.098
2420.015
2440.409
2460.265
2480.030
2500.091
2520.068
2540.008
6AHTk211 870.712
890.129
910.129
950.030
7AHTk253 2860.045
2880.197
2900.492
2920.265
8C22.279 1160.348
1180.432
1200.083
1240.091
1260.015
1300.030
9FH2001 1320.129
1360.015
1400.008
1440.576
1480.273
10FH2054 1480.106
1520.121
1560.447
1600.053
1640.144
1680.121
1720.008
11FH2848 2280.015
2300.212
2320.008
2360.076
2380.129
2400.303
2420.144
2440.114
12INRA21 950.462
970.008
990.235
1010.295
13INU005 1100.015
1240.508
1260.303
1300.008
1320.167
14INU030 1440.129
1480.061
1500.803
1520.008
15INU055 2080.023
2100.727
2140.174
2180.076
16LEI004 950.591
970.008
1050.053
1070.341
1090.008
17REN105L03 2290.250
2330.477
2350.129
2370.045
2390.008
2410.023
2430.023
2450.045
18REN162C04 2020.265
2060.735
19REN169D01 2020.061
2120.720
2140.030
2160.159
2180.030
20REN169O18 1620.167
1640.136
1660.470
1680.015
1700.212
21REN247M23 2680.568
2700.189
2720.152
2780.091
22REN54P11 2220.545
2280.076
2320.038
2340.038
2360.220
2380.083
23REN64E19 1390.455
1430.008
1450.371
1470.159
1490.008
24VGL0760 18.20.045
19.20.008
20.20.295
21.20.076
22.20.189
23.20.379
24.20.008
25VGL0910 130.227
150.053
16.10.008
17.10.379
18.10.053
19.10.280
26VGL1063 80.303
90.045
110.424
120.015
140.114
150.076
160.015
180.008
27VGL1165 180.174
190.023
200.098
210.015
220.038
250.258
260.061
270.023
280.015
290.068
300.136
310.076
320.015
28VGL1828 150.098
160.174
170.053
180.030
190.265
200.288
210.038
220.053
29VGL2009 90.182
120.008
130.348
140.136
150.326
30VGL2409 130.098
150.288
160.015
170.462
180.129
190.008
31VGL2918 120.053
130.121
13.30.008
140.136
150.023
160.008
17.30.159
18.30.015
19.30.152
20.30.235
21.30.015
22.30.068
23.30.008
32VGL3008 150.106
160.015
170.371
180.417
190.083
200.008
33VGL3235 130.068
140.606
150.015
190.053
200.038
210.189
220.023
230.008

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
WhippetMean666.2123.1840.6210.6400.038
 SE 0.4040.2230.0280.0230.023

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
WhippetMean665.2863.5630.6750.6950.029
 SE 0.5610.3590.0420.0350.031

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1216673.8620.7730.741-0.043
2AHT1376673.0530.5760.6720.144
3AHTH1306663.1540.6060.6830.113
4AHTh171-A6651.6660.1670.4000.583
5AHTh2606693.8210.7730.738-0.047
6AHTk2116641.8480.3790.4590.174
7AHTk2536642.8280.6360.6460.015
8C22.2796663.0840.7420.676-0.099
9FH20016652.3650.5000.5770.134
10FH20546673.7880.6970.7360.053
11FH28486685.1800.8480.807-0.051
12INRA216642.8090.5760.6440.106
13INU0056652.6490.6060.6220.026
14INU0306641.5030.3180.3350.050
15INU0556641.7680.4090.4340.058
16LEI0046652.1350.6360.532-0.197
17REN105L036683.2040.6670.6880.031
18REN162C046621.6390.4390.390-0.128
19REN169D016651.8220.4090.4510.093
20REN169O186653.2030.6360.6880.075
21REN247M236642.5650.5610.6100.081
22REN54P116662.7670.6360.6390.004
23REN64E196652.7040.5910.6300.062
24VGL07606673.6420.8030.725-0.107
25VGL09106663.5790.7580.721-0.051
26VGL10636683.4120.5760.7070.186
27VGL116566137.0310.8480.8580.011
28VGL18286684.9700.7880.7990.014
29VGL20096653.5810.6670.7210.075
30VGL24096663.0960.7580.677-0.119
31VGL291866136.8820.8480.8550.007
32VGL30086663.0310.6670.6700.005
33VGL32356682.4220.5910.587-0.006

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA6664.2290.7730.764-0.012
2DLA I-4ACA6674.6370.8030.784-0.024
3DLA I-4BCT6642.9930.5610.6660.158
4DLA11316674.2050.6970.7620.086
55ACA6632.2750.5000.5600.108
65ACT6664.3490.7880.770-0.023
75BCA6642.2520.6060.556-0.090