Updated Apr 22, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Berger Picard (n=152) |
---|---|---|
1052 | 380 372 289 184 | 0.102 |
1227 | 380 372 289 186 | 0.898 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Berger Picard (n=152) |
---|---|---|
2017 | 343 322 280 | 0.102 |
2067 | 343 322 284 | 0.898 |
Allele Frequencies
# | Locus Name | Allele | Berger Picard (n=152) |
---|---|---|---|
1 | AHT121 | 96 | 0.069 |
98 | 0.431 | ||
100 | 0.405 | ||
102 | 0.092 | ||
106 | 0.003 | ||
2 | AHT137 | 131 | 0.020 |
137 | 0.069 | ||
147 | 0.740 | ||
149 | 0.171 | ||
3 | AHTH130 | 121 | 0.135 |
123 | 0.204 | ||
127 | 0.003 | ||
131 | 0.497 | ||
137 | 0.158 | ||
145 | 0.003 | ||
4 | AHTh171-A | 219 | 1.000 |
5 | AHTh260 | 242 | 0.612 |
244 | 0.240 | ||
248 | 0.148 | ||
6 | AHTk211 | 91 | 0.293 |
95 | 0.135 | ||
97 | 0.572 | ||
7 | AHTk253 | 284 | 0.743 |
286 | 0.013 | ||
288 | 0.092 | ||
292 | 0.151 | ||
8 | C22.279 | 116 | 0.280 |
118 | 0.694 | ||
124 | 0.026 | ||
9 | FH2001 | 132 | 0.066 |
144 | 0.069 | ||
148 | 0.086 | ||
152 | 0.773 | ||
156 | 0.007 | ||
10 | FH2054 | 156 | 0.039 |
164 | 0.105 | ||
168 | 0.013 | ||
172 | 0.355 | ||
176 | 0.480 | ||
180 | 0.007 | ||
11 | FH2848 | 236 | 0.484 |
238 | 0.408 | ||
240 | 0.109 | ||
12 | INRA21 | 95 | 0.296 |
97 | 0.286 | ||
101 | 0.418 | ||
13 | INU005 | 110 | 0.296 |
122 | 0.503 | ||
126 | 0.201 | ||
14 | INU030 | 144 | 0.013 |
146 | 0.092 | ||
150 | 0.895 | ||
15 | INU055 | 210 | 0.970 |
214 | 0.007 | ||
220 | 0.023 | ||
16 | LEI004 | 85 | 0.470 |
95 | 0.530 | ||
17 | REN105L03 | 233 | 0.859 |
241 | 0.141 | ||
18 | REN162C04 | 200 | 0.020 |
206 | 0.793 | ||
208 | 0.188 | ||
19 | REN169D01 | 212 | 0.016 |
214 | 0.158 | ||
218 | 0.003 | ||
220 | 0.822 | ||
20 | REN169O18 | 164 | 0.174 |
168 | 0.411 | ||
170 | 0.411 | ||
172 | 0.003 | ||
21 | REN247M23 | 268 | 0.842 |
270 | 0.020 | ||
272 | 0.003 | ||
274 | 0.135 | ||
22 | REN54P11 | 222 | 0.003 |
226 | 0.023 | ||
232 | 0.674 | ||
234 | 0.299 | ||
23 | REN64E19 | 147 | 0.063 |
151 | 0.003 | ||
153 | 0.053 | ||
155 | 0.882 | ||
24 | VGL0760 | 13 | 0.020 |
14 | 0.007 | ||
15 | 0.112 | ||
16 | 0.003 | ||
20.2 | 0.003 | ||
21.2 | 0.655 | ||
22.2 | 0.191 | ||
23.2 | 0.010 | ||
25 | VGL0910 | 15 | 0.010 |
16.1 | 0.003 | ||
17.1 | 0.513 | ||
18.1 | 0.059 | ||
19.1 | 0.026 | ||
20.1 | 0.010 | ||
21.1 | 0.378 | ||
26 | VGL1063 | 8 | 0.444 |
10 | 0.046 | ||
14 | 0.020 | ||
18 | 0.023 | ||
19 | 0.326 | ||
20 | 0.141 | ||
27 | VGL1165 | 16 | 0.020 |
17 | 0.326 | ||
18 | 0.003 | ||
20 | 0.510 | ||
26 | 0.013 | ||
27 | 0.043 | ||
28 | 0.086 | ||
28 | VGL1828 | 18 | 0.036 |
19 | 0.964 | ||
29 | VGL2009 | 9 | 0.306 |
11 | 0.553 | ||
13 | 0.141 | ||
30 | VGL2409 | 15 | 0.010 |
17 | 0.184 | ||
18 | 0.704 | ||
18.1 | 0.007 | ||
19 | 0.095 | ||
31 | VGL2918 | 12 | 0.003 |
13 | 0.164 | ||
14 | 0.151 | ||
15 | 0.003 | ||
17.3 | 0.674 | ||
18.3 | 0.003 | ||
32 | VGL3008 | 14 | 0.082 |
15 | 0.572 | ||
16 | 0.036 | ||
18 | 0.194 | ||
19 | 0.112 | ||
20 | 0.003 | ||
33 | VGL3235 | 14 | 0.954 |
16 | 0.046 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 152 | 4.061 | 1.993 | 0.438 | 0.439 | 0.004 | |
SE | 0.290 | 0.109 | 0.035 | 0.034 | 0.010 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 152 | 1.286 | 1.064 | 0.036 | 0.052 | 0.091 | |
SE | 0.171 | 0.038 | 0.021 | 0.031 | 0.054 |
Standard genetic assessment for individual STR loci
Berger Picard
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 152 | 5 | 2.757 | 0.651 | 0.637 | -0.022 |
2 | AHT137 | 152 | 4 | 1.718 | 0.421 | 0.418 | -0.008 |
3 | AHTH130 | 152 | 6 | 3.017 | 0.704 | 0.669 | -0.053 |
4 | AHTh171-A | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
5 | AHTh260 | 152 | 3 | 2.203 | 0.480 | 0.546 | 0.121 |
6 | AHTk211 | 152 | 3 | 2.317 | 0.526 | 0.568 | 0.074 |
7 | AHTk253 | 152 | 4 | 1.712 | 0.401 | 0.416 | 0.035 |
8 | C22.279 | 152 | 3 | 1.784 | 0.461 | 0.439 | -0.048 |
9 | FH2001 | 152 | 5 | 1.629 | 0.388 | 0.386 | -0.006 |
10 | FH2054 | 152 | 6 | 2.705 | 0.645 | 0.630 | -0.023 |
11 | FH2848 | 152 | 3 | 2.427 | 0.572 | 0.588 | 0.027 |
12 | INRA21 | 152 | 3 | 2.906 | 0.671 | 0.656 | -0.023 |
13 | INU005 | 152 | 3 | 2.623 | 0.658 | 0.619 | -0.063 |
14 | INU030 | 152 | 3 | 1.236 | 0.211 | 0.191 | -0.103 |
15 | INU055 | 152 | 3 | 1.061 | 0.059 | 0.058 | -0.025 |
16 | LEI004 | 152 | 2 | 1.993 | 0.454 | 0.498 | 0.089 |
17 | REN105L03 | 152 | 2 | 1.321 | 0.243 | 0.243 | -0.002 |
18 | REN162C04 | 152 | 3 | 1.506 | 0.322 | 0.336 | 0.041 |
19 | REN169D01 | 152 | 4 | 1.426 | 0.289 | 0.298 | 0.030 |
20 | REN169O18 | 152 | 4 | 2.713 | 0.592 | 0.631 | 0.062 |
21 | REN247M23 | 152 | 4 | 1.374 | 0.263 | 0.272 | 0.033 |
22 | REN54P11 | 152 | 4 | 1.835 | 0.441 | 0.455 | 0.031 |
23 | REN64E19 | 152 | 4 | 1.276 | 0.230 | 0.216 | -0.065 |
24 | VGL0760 | 152 | 8 | 2.092 | 0.454 | 0.522 | 0.130 |
25 | VGL0910 | 152 | 7 | 2.434 | 0.625 | 0.589 | -0.061 |
26 | VGL1063 | 152 | 6 | 3.065 | 0.711 | 0.674 | -0.055 |
27 | VGL1165 | 152 | 7 | 2.661 | 0.618 | 0.624 | 0.009 |
28 | VGL1828 | 152 | 2 | 1.075 | 0.059 | 0.070 | 0.151 |
29 | VGL2009 | 152 | 3 | 2.387 | 0.579 | 0.581 | 0.004 |
30 | VGL2409 | 152 | 5 | 1.856 | 0.454 | 0.461 | 0.016 |
31 | VGL2918 | 152 | 6 | 1.981 | 0.520 | 0.495 | -0.049 |
32 | VGL3008 | 152 | 6 | 2.592 | 0.651 | 0.614 | -0.061 |
33 | VGL3235 | 152 | 2 | 1.096 | 0.092 | 0.088 | -0.048 |
Standard genetic assessment for 7 STRs in the DLA region
Berger Picard
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
2 | DLA I-4ACA | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
3 | DLA I-4BCT | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
4 | DLA1131 | 152 | 2 | 1.224 | 0.125 | 0.183 | 0.317 |
5 | 5ACA | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
6 | 5ACT | 152 | 1 | 1.000 | 0.000 | 0.000 | 0.000 |
7 | 5BCA | 152 | 2 | 1.224 | 0.125 | 0.183 | 0.317 |