Statistics and Breed-wide Allele Frequency - Border Collie

Updated May 5, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=69)
1008	386 373 289 182	0.007
1011	376 365 281 180	0.065
1012	388 369 289 188	0.051
1014	375 373 287 178	0.080
1029	380 365 281 182	0.007
1030	380 373 293 178	0.007
1045	376 371 277 186	0.159
1052	380 372 289 184	0.014
1063	382 373 289 182	0.007
1068	380 373 287 181	0.217
1092	376 379 277 181	0.007
1104	386 373 289 186	0.130
1222	386 379 277 181	0.007
1236	376 379 289 181	0.217
1237	376 379 277 178	0.007
1238	376 371 277 184	0.007
1239	376 371 277 181	0.007

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=69)
2001	343 324 284	0.145
2002	343 327 280	0.138
2003	343 324 282	0.051
2005	339 322 280	0.007
2017	343 322 280	0.167
2022	339 327 282	0.007
2023	341 323 282	0.007
2031	339 322 282	0.007
2033	339 323 282	0.007
2037	341 327 280	0.080
2039	345 327 276	0.145
2040	345 327 280	0.007
2052	345 321 280	0.007
2053	343 324 280	0.072
2067	343 322 284	0.072
2075	341 327 282	0.014
2096	351 322 280	0.029
2125	351 322 286	0.036

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=74)
1	AHT121	92	0.068
		94	0.082
		98	0.048
		100	0.103
		102	0.247
		104	0.027
		106	0.253
		108	0.137
		110	0.007
		112	0.027
2	AHT137	131	0.223
		137	0.061
		141	0.020
		143	0.007
		145	0.412
		147	0.074
		149	0.115
		153	0.088
3	AHTH130	117	0.007
		119	0.027
		121	0.331
		123	0.007
		125	0.027
		127	0.115
		129	0.054
		131	0.236
		133	0.041
		135	0.155
4	AHTh171-A	219	0.021
		221	0.007
		225	0.137
		227	0.014
		229	0.103
		231	0.007
		233	0.432
		235	0.034
		237	0.240
		241	0.007
5	AHTh260	238	0.148
		240	0.246
		242	0.148
		244	0.014
		246	0.380
		248	0.049
		252	0.007
		254	0.007
6	AHTk211	87	0.110
		89	0.082
		91	0.740
		93	0.021
		95	0.014
		97	0.034
7	AHTk253	284	0.116
		286	0.096
		288	0.342
		290	0.014
		292	0.432
8	C22.279	114	0.055
		116	0.274
		118	0.555
		120	0.014
		124	0.068
		126	0.021
		128	0.014
9	FH2001	128	0.055
		132	0.404
		136	0.041
		140	0.014
		144	0.411
		148	0.075
10	FH2054	144	0.007
		148	0.116
		152	0.425
		156	0.130
		160	0.219
		164	0.034
		168	0.055
		172	0.007
		176	0.007
11	FH2848	232	0.021
		234	0.162
		236	0.021
		238	0.092
		240	0.197
		242	0.275
		244	0.232
12	INRA21	91	0.108
		95	0.730
		97	0.068
		101	0.088
		103	0.007
13	INU005	110	0.110
		120	0.007
		122	0.007
		124	0.329
		126	0.110
		128	0.021
		130	0.007
		132	0.411
14	INU030	144	0.219
		148	0.041
		150	0.322
		152	0.308
		154	0.103
		156	0.007
15	INU055	208	0.189
		210	0.730
		212	0.014
		214	0.007
		216	0.034
		218	0.027
16	LEI004	85	0.233
		95	0.562
		107	0.185
		111	0.021
17	REN105L03	227	0.042
		231	0.028
		233	0.254
		235	0.141
		237	0.042
		239	0.176
		241	0.310
		245	0.007
18	REN162C04	200	0.096
		202	0.397
		204	0.274
		206	0.075
		208	0.158
19	REN169D01	202	0.148
		210	0.127
		212	0.106
		214	0.007
		216	0.437
		218	0.148
		220	0.021
		224	0.007
20	REN169O18	160	0.021
		162	0.042
		164	0.111
		166	0.021
		168	0.493
		170	0.313
21	REN247M23	266	0.162
		268	0.232
		270	0.183
		272	0.218
		276	0.077
		278	0.127
22	REN54P11	222	0.014
		226	0.185
		228	0.027
		232	0.445
		234	0.123
		236	0.178
		238	0.027
23	REN64E19	139	0.014
		143	0.027
		145	0.405
		147	0.250
		149	0.176
		153	0.128
24	VGL0760	12	0.055
		14	0.267
		15	0.007
		18.2	0.034
		20.2	0.158
		21.2	0.377
		22.2	0.021
		23.2	0.075
		24.2	0.007
25	VGL0910	16.1	0.027
		17.1	0.459
		18.1	0.158
		19.1	0.192
		20.1	0.068
		21.1	0.021
		22.1	0.062
		23.1	0.007
		24.1	0.007
26	VGL1063	8	0.048
		9	0.610
		11	0.007
		12	0.034
		13	0.041
		14	0.103
		15	0.075
		17	0.014
		18	0.007
		19	0.007
		20	0.034
		21	0.014
		22	0.007
27	VGL1165	14	0.014
		15	0.007
		17	0.014
		18	0.007
		20	0.342
		21	0.178
		22	0.014
		23	0.007
		24	0.007
		25	0.007
		26	0.123
		27	0.055
		28	0.089
		29	0.027
		30	0.103
		31	0.007
28	VGL1828	15	0.123
		16	0.089
		17	0.329
		19	0.089
		20	0.034
		21	0.171
		22	0.164
29	VGL2009	9	0.418
		10	0.034
		11	0.021
		12	0.021
		13	0.212
		14	0.075
		15	0.212
		16	0.007
30	VGL2409	13	0.055
		14	0.404
		15	0.048
		16	0.027
		17	0.315
		18	0.096
		19	0.027
		20	0.027
31	VGL2918	12	0.274
		13	0.151
		14	0.205
		15	0.137
		16	0.021
		17.3	0.110
		18.3	0.089
		19.3	0.007
		20.3	0.007
32	VGL3008	10	0.014
		14	0.068
		15	0.075
		16	0.274
		17	0.130
		18	0.205
		19	0.055
		20	0.110
		22	0.048
		23	0.014
		24	0.007
33	VGL3235	12	0.130
		13	0.021
		14	0.295
		15	0.075
		16	0.137
		17	0.089
		18	0.247
		19	0.007

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	74	7.848	3.838	0.686	0.709	0.033
	SE		0.416	0.202	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	74	5.714	3.041	0.668	0.665	-0.006
	SE		0.265	0.135	0.020	0.019	0.018

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	74	10	5.895	0.781	0.830	0.060
2	AHT137	74	8	3.997	0.676	0.750	0.099
3	AHTH130	74	10	4.785	0.770	0.791	0.026
4	AHTh171-A	74	10	3.638	0.712	0.725	0.018
5	AHTh260	74	8	3.971	0.746	0.748	0.002
6	AHTk211	74	6	1.761	0.342	0.432	0.208
7	AHTk253	74	5	3.064	0.671	0.674	0.003
8	C22.279	74	7	2.555	0.658	0.609	-0.080
9	FH2001	74	6	2.918	0.630	0.657	0.041
10	FH2054	74	9	3.800	0.685	0.737	0.070
11	FH2848	74	7	4.906	0.831	0.796	-0.044
12	INRA21	74	5	1.797	0.419	0.443	0.055
13	INU005	74	8	3.316	0.699	0.698	-0.000
14	INU030	74	6	3.862	0.808	0.741	-0.091
15	INU055	74	6	1.753	0.473	0.430	-0.101
16	LEI004	74	4	2.473	0.603	0.596	-0.012
17	REN105L03	74	8	4.640	0.690	0.784	0.120
18	REN162C04	74	5	3.669	0.658	0.727	0.096
19	REN169D01	74	8	3.815	0.746	0.738	-0.012
20	REN169O18	74	6	2.811	0.583	0.644	0.095
21	REN247M23	74	6	5.450	0.859	0.817	-0.052
22	REN54P11	74	7	3.559	0.685	0.719	0.047
23	REN64E19	74	6	3.635	0.716	0.725	0.012
24	VGL0760	74	9	4.025	0.712	0.752	0.052
25	VGL0910	74	9	3.547	0.699	0.718	0.027
26	VGL1063	74	13	2.533	0.575	0.605	0.049
27	VGL1165	74	16	5.340	0.753	0.813	0.073
28	VGL1828	74	7	5.085	0.699	0.803	0.130
29	VGL2009	74	8	3.670	0.671	0.728	0.077
30	VGL2409	74	8	3.580	0.753	0.721	-0.045
31	VGL2918	74	9	5.580	0.767	0.821	0.065
32	VGL3008	74	11	6.161	0.822	0.838	0.019
33	VGL3235	74	8	5.068	0.740	0.803	0.078

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	74	6	3.186	0.686	0.686	0.001
2	DLA I-4ACA	74	6	3.340	0.712	0.701	-0.017
3	DLA I-4BCT	74	6	3.273	0.740	0.695	-0.065
4	DLA1131	74	7	3.202	0.658	0.688	0.044
5	5ACA	74	5	2.204	0.577	0.546	-0.057
6	5ACT	74	5	3.031	0.616	0.670	0.080
7	5BCA	74	5	3.054	0.690	0.673	-0.026

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Connect with us on social media