Statistics and Breed-wide Allele Frequency - Irish Setter

Updated Feb 1, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Irish Setter (n=60)
1008	386 373 289 182	0.092
1011	376 365 281 180	0.083
1014	375 373 287 178	0.300
1054	382 379 277 184	0.150
1068	380 373 287 181	0.008
1069	380 365 281 184	0.100
1128	384 376 287 182	0.008
1210	380 365 277 184	0.142
1211	386 369 277 183	0.117

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Irish Setter (n=60)
2005	339 322 280	0.092
2012	345 322 280	0.050
2015	339 327 280	0.142
2022	339 327 282	0.150
2037	341 327 280	0.300
2045	339 325 284	0.100
2052	345 321 280	0.092
2053	343 324 280	0.008
2079	343 323 278	0.008
2114	345 323 284	0.058

Allele Frequencies

#	Locus Name	Allele	Irish Setter (n=61)
1	AHT121	100	0.254
		102	0.279
		108	0.041
		110	0.115
		112	0.311
2	AHT137	131	0.320
		137	0.033
		141	0.025
		143	0.074
		145	0.066
		147	0.328
		149	0.156
3	AHTH130	117	0.820
		119	0.033
		123	0.041
		127	0.107
4	AHTh171-A	219	0.082
		225	0.148
		227	0.041
		233	0.303
		237	0.426
5	AHTh260	240	0.049
		244	0.139
		246	0.508
		250	0.016
		252	0.197
		254	0.090
6	AHTk211	87	0.082
		89	0.082
		91	0.795
		93	0.041
7	AHTk253	286	0.049
		288	0.107
		290	0.074
		292	0.770
8	C22.279	116	0.082
		118	0.262
		120	0.549
		122	0.008
		126	0.016
		130	0.082
9	FH2001	132	0.049
		144	0.057
		148	0.787
		152	0.107
10	FH2054	152	0.344
		156	0.041
		160	0.098
		164	0.459
		168	0.008
		172	0.049
11	FH2848	230	0.008
		234	0.049
		236	0.402
		238	0.352
		240	0.180
		242	0.008
12	INRA21	93	0.008
		95	0.377
		97	0.311
		101	0.303
13	INU005	124	0.705
		126	0.098
		132	0.197
14	INU030	144	0.475
		148	0.025
		150	0.500
15	INU055	210	0.270
		212	0.230
		214	0.303
		216	0.197
16	LEI004	85	0.279
		95	0.533
		97	0.189
17	REN105L03	233	0.041
		235	0.254
		237	0.008
		239	0.607
		241	0.090
18	REN162C04	198	0.418
		202	0.172
		206	0.197
		208	0.213
19	REN169D01	212	0.385
		216	0.172
		218	0.156
		220	0.016
		222	0.270
20	REN169O18	162	0.295
		164	0.123
		166	0.148
		168	0.402
		170	0.025
		172	0.008
21	REN247M23	268	0.713
		270	0.041
		274	0.246
22	REN54P11	222	0.156
		226	0.230
		228	0.115
		232	0.418
		234	0.057
		238	0.025
23	REN64E19	139	0.016
		145	0.500
		147	0.434
		153	0.049
24	VGL0760	13	0.090
		14	0.852
		19.2	0.033
		20.2	0.008
		23.2	0.016
25	VGL0910	17.1	0.008
		18.1	0.123
		19.1	0.107
		20	0.074
		20.1	0.025
		21.1	0.623
		22.1	0.041
26	VGL1063	9	0.156
		13	0.328
		14	0.025
		17	0.131
		18	0.361
27	VGL1165	15	0.033
		16	0.008
		19	0.066
		21	0.016
		26	0.320
		27	0.320
		28	0.066
		29	0.008
		30	0.164
28	VGL1828	14	0.074
		16	0.049
		17	0.049
		20	0.066
		21	0.352
		22	0.410
29	VGL2009	13	0.279
29	VGL2009	14	0.721
30	VGL2409	15	0.230
		16	0.566
		17	0.049
		18	0.049
		19	0.107
31	VGL2918	12	0.041
		13	0.582
		14	0.066
		17.3	0.189
		18.3	0.033
		19.3	0.033
		22.3	0.057
32	VGL3008	15	0.287
		16	0.049
		17	0.320
		18	0.254
		19	0.016
		22	0.033
		23	0.025
		24	0.016
33	VGL3235	13	0.197
		14	0.713
		15	0.041
		18	0.033
		19	0.016

Standard genetic assessment based on 33 autosomal STR loci

Irish Setter

		N	Na	Ne	Ho	He	F
	Mean	61	5.030	2.741	0.582	0.591	0.010
	SE		0.266	0.151	0.025	0.025	0.014

Standard genetic assessment based on 7 STRs in the DLA region

Irish Setter

		N	Na	Ne	Ho	He	F
	Mean	61	5.000	3.187	0.541	0.667	0.194
	SE		0.350	0.289	0.037	0.032	0.026

Standard genetic assessment for individual STR loci

Irish Setter

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	61	5	3.935	0.721	0.746	0.033
2	AHT137	61	7	4.076	0.787	0.755	-0.043
3	AHTH130	61	4	1.458	0.344	0.314	-0.096
4	AHTh171-A	61	5	3.291	0.623	0.696	0.105
5	AHTh260	61	6	3.056	0.508	0.673	0.245
6	AHTk211	61	4	1.545	0.344	0.353	0.024
7	AHTk253	61	4	1.632	0.443	0.387	-0.143
8	C22.279	61	6	2.603	0.623	0.616	-0.012
9	FH2001	61	4	1.572	0.344	0.364	0.054
10	FH2054	61	6	2.915	0.590	0.657	0.102
11	FH2848	61	6	3.119	0.721	0.679	-0.062
12	INRA21	61	4	3.019	0.607	0.669	0.093
13	INU005	61	3	1.834	0.443	0.455	0.027
14	INU030	61	3	2.098	0.541	0.523	-0.034
15	INU055	61	4	3.898	0.705	0.743	0.052
16	LEI004	61	3	2.518	0.607	0.603	-0.006
17	REN105L03	61	5	2.261	0.590	0.558	-0.058
18	REN162C04	61	4	3.466	0.770	0.712	-0.083
19	REN169D01	61	5	3.627	0.689	0.724	0.049
20	REN169O18	61	6	3.497	0.656	0.714	0.082
21	REN247M23	61	3	1.752	0.508	0.429	-0.184
22	REN54P11	61	6	3.721	0.754	0.731	-0.031
23	REN64E19	61	4	2.265	0.541	0.559	0.032
24	VGL0760	61	5	1.358	0.262	0.264	0.006
25	VGL0910	61	7	2.368	0.607	0.578	-0.050
26	VGL1063	61	5	3.576	0.656	0.720	0.090
27	VGL1165	61	9	4.144	0.738	0.759	0.028
28	VGL1828	61	6	3.260	0.754	0.693	-0.088
29	VGL2009	61	2	1.672	0.393	0.402	0.021
30	VGL2409	61	5	2.572	0.623	0.611	-0.019
31	VGL2918	61	7	2.593	0.574	0.614	0.066
32	VGL3008	61	8	3.942	0.738	0.746	0.012
33	VGL3235	61	5	1.817	0.393	0.450	0.125

Standard genetic assessment for 7 STRs in the DLA region

Irish Setter

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	61	6	4.552	0.656	0.780	0.160
2	DLA I-4ACA	61	5	3.361	0.508	0.702	0.277
3	DLA I-4BCT	61	4	3.255	0.590	0.693	0.148
4	DLA1131	61	6	3.728	0.639	0.732	0.126
5	5ACA	61	4	2.811	0.508	0.644	0.211
6	5ACT	61	6	2.606	0.541	0.616	0.122
7	5BCA	61	4	1.998	0.344	0.499	0.311

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Irish Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Irish Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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