Statistics and Breed-wide Allele Frequency - Magyar Agar

Updated Nov 12, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Magyar Agar (n=78)
1003	387 375 277 186	0.058
1015	380 373 291 186	0.045
1033	382 379 277 181	0.096
1052	380 372 289 184	0.051
1054	382 379 277 184	0.141
1058	387 378 287 186	0.103
1066	376 375 277 178	0.090
1067	376 373 277 178	0.006
1104	386 373 289 186	0.128
1161	380 379 277 186	0.013
1162	386 373 289 181	0.077
1163	389 381 277 183	0.071
1164	391 379 281 181	0.038
1205	381 379 277 178	0.013
1206	381 379 277 180	0.013
1207	386 371 277 186	0.013
1208	386 373 277 181	0.019
1209	386 378 287 186	0.013
1215	376 365 281 182	0.006
1242	382 379 277 186	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Magyar Agar (n=78)
2001	343 324 284	0.071
2006	339 325 280	0.192
2012	345 322 280	0.083
2016	339 323 284	0.071
2017	343 322 280	0.449
2029	337 324 268	0.006
2037	341 327 280	0.013
2046	339 329 280	0.019
2047	339 331 280	0.096

Allele Frequencies

#	Locus Name	Allele	Magyar Agar (n=78)
1	AHT121	94	0.026
		96	0.032
		98	0.032
		100	0.090
		102	0.071
		104	0.429
		106	0.250
		110	0.006
		114	0.013
		118	0.051
2	AHT137	131	0.308
		133	0.006
		137	0.147
		141	0.160
		145	0.160
		147	0.006
		149	0.032
		151	0.038
		153	0.141
3	AHTH130	117	0.006
		119	0.090
		125	0.096
		127	0.481
		129	0.122
		131	0.064
		133	0.083
		135	0.045
		137	0.013
4	AHTh171-A	217	0.013
		219	0.167
		223	0.013
		225	0.064
		227	0.019
		229	0.391
		231	0.013
		233	0.058
		235	0.147
		237	0.115
5	AHTh260	236	0.045
		240	0.115
		244	0.103
		246	0.346
		248	0.006
		250	0.186
		252	0.160
		254	0.038
6	AHTk211	87	0.051
		89	0.404
		91	0.410
		93	0.026
		95	0.109
7	AHTk253	284	0.058
		286	0.064
		288	0.308
		290	0.558
		292	0.013
8	C22.279	116	0.038
		118	0.455
		120	0.019
		122	0.006
		124	0.256
		126	0.192
		130	0.032
9	FH2001	132	0.064
		136	0.096
		140	0.032
		144	0.750
		148	0.058
10	FH2054	144	0.058
		152	0.135
		156	0.276
		160	0.250
		164	0.038
		168	0.077
		172	0.160
		176	0.006
11	FH2848	228	0.032
		230	0.071
		232	0.045
		236	0.429
		238	0.135
		240	0.122
		242	0.147
		244	0.019
12	INRA21	95	0.256
		97	0.160
		99	0.481
		101	0.096
		105	0.006
13	INU005	124	0.288
		126	0.372
		128	0.147
		130	0.045
		132	0.147
14	INU030	144	0.199
		150	0.718
		152	0.083
15	INU055	208	0.135
		210	0.231
		212	0.269
		214	0.295
		216	0.006
		218	0.064
16	LEI004	85	0.058
		95	0.385
		97	0.058
		105	0.205
		107	0.244
		109	0.013
		111	0.038
17	REN105L03	227	0.167
		229	0.096
		231	0.019
		233	0.218
		235	0.436
		239	0.064
18	REN162C04	198	0.032
		200	0.019
		202	0.474
		204	0.109
		206	0.353
		208	0.013
19	REN169D01	202	0.006
		208	0.032
		210	0.019
		212	0.212
		216	0.506
		218	0.006
		220	0.218
20	REN169O18	158	0.077
		160	0.051
		162	0.378
		164	0.218
		168	0.135
		170	0.141
21	REN247M23	266	0.256
		268	0.263
		270	0.173
		272	0.218
		276	0.045
		278	0.045
22	REN54P11	222	0.019
		226	0.205
		228	0.154
		232	0.071
		234	0.096
		236	0.212
		238	0.244
23	REN64E19	139	0.032
		141	0.032
		145	0.494
		147	0.353
		149	0.045
		151	0.019
		153	0.026
24	VGL0760	12	0.032
		18.2	0.436
		19.2	0.006
		20.2	0.314
		21.2	0.064
		22.2	0.103
		23.2	0.038
		24.2	0.006
25	VGL0910	13	0.115
		14	0.006
		14.1	0.026
		16.1	0.154
		17	0.026
		17.1	0.032
		18	0.404
		18.1	0.026
		19.1	0.186
		21.1	0.013
		23.1	0.013
26	VGL1063	8	0.051
		9	0.090
		11	0.071
		12	0.122
		13	0.276
		14	0.071
		15	0.154
		16	0.160
		17	0.006
27	VGL1165	17	0.019
		18	0.026
		19	0.135
		20	0.038
		21	0.090
		24	0.006
		25	0.192
		26	0.071
		28	0.340
		29	0.045
		30	0.019
		32	0.019
28	VGL1828	15	0.006
		16	0.122
		17	0.103
		18	0.013
		19	0.154
		20	0.474
		21	0.006
		22	0.109
		23	0.013
29	VGL2009	9	0.385
		13	0.244
		14	0.308
		16	0.064
30	VGL2409	13	0.340
		15	0.122
		16	0.077
		17	0.205
		18	0.205
		19	0.019
		20	0.032
31	VGL2918	12	0.019
		13	0.391
		14	0.141
		15	0.026
		18.3	0.064
		19.3	0.013
		20.3	0.006
		21.3	0.199
		22.3	0.141
32	VGL3008	14	0.051
		15	0.051
		16	0.103
		17	0.506
		18	0.160
		19	0.032
		20	0.032
		21	0.064
33	VGL3235	12	0.077
		13	0.288
		14	0.308
		15	0.032
		16	0.186
		17	0.038
		19	0.071

Standard genetic assessment based on 33 autosomal STR loci

Magyar Agar

		N	Na	Ne	Ho	He	F
	Mean	78	7.242	3.829	0.725	0.716	-0.012
	SE		0.348	0.179	0.019	0.016	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Magyar Agar

		N	Na	Ne	Ho	He	F
	Mean	78	6.143	3.356	0.632	0.639	0.005
	SE		0.652	0.508	0.064	0.067	0.012

Standard genetic assessment for individual STR loci

Magyar Agar

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	78	10	3.766	0.667	0.734	0.092
2	AHT137	78	9	5.256	0.859	0.810	-0.061
3	AHTH130	78	9	3.616	0.667	0.723	0.078
4	AHTh171-A	78	10	4.464	0.782	0.776	-0.008
5	AHTh260	78	8	4.821	0.872	0.793	-0.100
6	AHTk211	78	5	2.885	0.769	0.653	-0.177
7	AHTk253	78	5	2.420	0.628	0.587	-0.071
8	C22.279	78	7	3.197	0.667	0.687	0.030
9	FH2001	78	5	1.724	0.449	0.420	-0.069
10	FH2054	78	8	5.180	0.833	0.807	-0.033
11	FH2848	78	8	4.040	0.769	0.752	-0.022
12	INRA21	78	5	3.013	0.679	0.668	-0.017
13	INU005	78	5	3.746	0.808	0.733	-0.102
14	INU030	78	3	1.780	0.359	0.438	0.181
15	INU055	78	6	4.256	0.833	0.765	-0.089
16	LEI004	78	7	3.881	0.769	0.742	-0.036
17	REN105L03	78	6	3.584	0.705	0.721	0.022
18	REN162C04	78	6	2.757	0.654	0.637	-0.026
19	REN169D01	78	7	2.856	0.641	0.650	0.014
20	REN169O18	78	6	4.218	0.756	0.763	0.009
21	REN247M23	78	6	4.623	0.718	0.784	0.084
22	REN54P11	78	7	5.422	0.833	0.816	-0.022
23	REN64E19	78	7	2.681	0.628	0.627	-0.002
24	VGL0760	78	8	3.269	0.692	0.694	0.003
25	VGL0910	78	11	4.202	0.821	0.762	-0.077
26	VGL1063	78	9	6.218	0.833	0.839	0.007
27	VGL1165	78	12	5.295	0.795	0.811	0.020
28	VGL1828	78	9	3.493	0.782	0.714	-0.096
29	VGL2009	78	4	3.267	0.718	0.694	-0.035
30	VGL2409	78	7	4.510	0.705	0.778	0.094
31	VGL2918	78	9	4.210	0.744	0.762	0.025
32	VGL3008	78	8	3.289	0.654	0.696	0.060
33	VGL3235	78	7	4.428	0.821	0.774	-0.060

Standard genetic assessment for 7 STRs in the DLA region

Magyar Agar

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	78	8	5.649	0.833	0.823	-0.013
2	DLA I-4ACA	78	8	4.513	0.756	0.778	0.028
3	DLA I-4BCT	78	5	2.681	0.615	0.627	0.018
4	DLA1131	78	7	3.995	0.731	0.750	0.025
5	5ACA	78	5	2.382	0.564	0.580	0.028
6	5ACT	78	7	2.935	0.654	0.659	0.008
7	5BCA	78	3	1.339	0.269	0.253	-0.063

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Magyar Agar

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Magyar Agar

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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