Updated Mar 27, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Scottish Collie (n=125) |
---|---|---|
1006 | 387 375 293 180 | 0.032 |
1008 | 386 373 289 182 | 0.008 |
1012 | 388 369 289 188 | 0.008 |
1014 | 375 373 287 178 | 0.004 |
1016 | 382 371 277 178 | 0.088 |
1045 | 376 371 277 186 | 0.732 |
1087 | 380 371 277 178 | 0.016 |
1094 | 395 375 277 176 | 0.008 |
1160 | 386 369 289 176 | 0.008 |
1191 | 388 373 260 186 | 0.004 |
1222 | 386 379 277 181 | 0.032 |
1223 | 380 371 289 181 | 0.056 |
1224 | 385 371 277 182 | 0.004 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Scottish Collie (n=125) |
---|---|---|
2002 | 343 327 280 | 0.004 |
2003 | 343 324 282 | 0.016 |
2007 | 351 327 280 | 0.004 |
2012 | 345 322 280 | 0.008 |
2018 | 339 324 284 | 0.004 |
2031 | 339 322 282 | 0.016 |
2037 | 341 327 280 | 0.004 |
2039 | 345 327 276 | 0.720 |
2065 | 339 325 286 | 0.016 |
2080 | 339 325 276 | 0.016 |
2081 | 343 322 282 | 0.004 |
2089 | 343 331 276 | 0.008 |
2091 | 343 327 288 | 0.052 |
2097 | 343 327 276 | 0.004 |
2119 | 343 324 286 | 0.056 |
2120 | 343 327 286 | 0.032 |
2121 | 351 327 282 | 0.028 |
2126 | 343 327 282 | 0.008 |
Allele Frequencies
# | Locus Name | Allele | Scottish Collie (n=125) |
---|---|---|---|
1 | AHT121 | 94 | 0.128 |
98 | 0.076 | ||
100 | 0.352 | ||
102 | 0.076 | ||
104 | 0.312 | ||
106 | 0.024 | ||
108 | 0.012 | ||
110 | 0.020 | ||
2 | AHT137 | 131 | 0.036 |
133 | 0.024 | ||
137 | 0.456 | ||
139 | 0.048 | ||
145 | 0.020 | ||
147 | 0.160 | ||
151 | 0.256 | ||
3 | AHTH130 | 113 | 0.004 |
119 | 0.004 | ||
121 | 0.036 | ||
123 | 0.628 | ||
125 | 0.008 | ||
127 | 0.220 | ||
129 | 0.036 | ||
131 | 0.052 | ||
133 | 0.008 | ||
135 | 0.004 | ||
4 | AHTh171-A | 219 | 0.140 |
221 | 0.340 | ||
223 | 0.200 | ||
225 | 0.028 | ||
233 | 0.264 | ||
235 | 0.024 | ||
237 | 0.004 | ||
5 | AHTh260 | 238 | 0.068 |
240 | 0.012 | ||
242 | 0.004 | ||
246 | 0.576 | ||
248 | 0.032 | ||
250 | 0.208 | ||
252 | 0.100 | ||
6 | AHTk211 | 87 | 0.012 |
89 | 0.672 | ||
91 | 0.016 | ||
95 | 0.224 | ||
97 | 0.076 | ||
7 | AHTk253 | 284 | 0.016 |
286 | 0.008 | ||
288 | 0.600 | ||
290 | 0.004 | ||
292 | 0.372 | ||
8 | C22.279 | 116 | 0.180 |
118 | 0.060 | ||
120 | 0.012 | ||
124 | 0.540 | ||
126 | 0.184 | ||
128 | 0.008 | ||
130 | 0.016 | ||
9 | FH2001 | 124 | 0.004 |
128 | 0.004 | ||
132 | 0.268 | ||
136 | 0.164 | ||
140 | 0.060 | ||
144 | 0.368 | ||
148 | 0.124 | ||
152 | 0.008 | ||
10 | FH2054 | 148 | 0.012 |
152 | 0.024 | ||
156 | 0.068 | ||
160 | 0.020 | ||
168 | 0.116 | ||
172 | 0.096 | ||
176 | 0.576 | ||
180 | 0.088 | ||
11 | FH2848 | 230 | 0.012 |
232 | 0.108 | ||
234 | 0.288 | ||
236 | 0.108 | ||
238 | 0.376 | ||
240 | 0.032 | ||
242 | 0.044 | ||
244 | 0.028 | ||
246 | 0.004 | ||
12 | INRA21 | 91 | 0.064 |
95 | 0.156 | ||
97 | 0.468 | ||
99 | 0.036 | ||
101 | 0.272 | ||
105 | 0.004 | ||
13 | INU005 | 110 | 0.004 |
122 | 0.012 | ||
124 | 0.524 | ||
126 | 0.456 | ||
130 | 0.004 | ||
14 | INU030 | 144 | 0.068 |
146 | 0.320 | ||
150 | 0.032 | ||
152 | 0.556 | ||
154 | 0.024 | ||
15 | INU055 | 208 | 0.004 |
210 | 0.784 | ||
212 | 0.040 | ||
214 | 0.016 | ||
218 | 0.156 | ||
16 | LEI004 | 85 | 0.012 |
95 | 0.884 | ||
97 | 0.008 | ||
101 | 0.004 | ||
107 | 0.092 | ||
17 | REN105L03 | 227 | 0.296 |
231 | 0.012 | ||
233 | 0.280 | ||
235 | 0.152 | ||
237 | 0.036 | ||
239 | 0.012 | ||
241 | 0.212 | ||
18 | REN162C04 | 200 | 0.068 |
202 | 0.196 | ||
204 | 0.292 | ||
206 | 0.300 | ||
208 | 0.144 | ||
19 | REN169D01 | 202 | 0.056 |
210 | 0.008 | ||
212 | 0.704 | ||
216 | 0.168 | ||
218 | 0.016 | ||
220 | 0.048 | ||
20 | REN169O18 | 160 | 0.008 |
162 | 0.652 | ||
164 | 0.032 | ||
166 | 0.048 | ||
168 | 0.216 | ||
170 | 0.044 | ||
21 | REN247M23 | 266 | 0.364 |
268 | 0.592 | ||
270 | 0.008 | ||
272 | 0.016 | ||
278 | 0.020 | ||
22 | REN54P11 | 222 | 0.544 |
226 | 0.400 | ||
230 | 0.004 | ||
232 | 0.024 | ||
234 | 0.012 | ||
236 | 0.008 | ||
240 | 0.004 | ||
242 | 0.004 | ||
23 | REN64E19 | 139 | 0.016 |
143 | 0.028 | ||
145 | 0.324 | ||
147 | 0.548 | ||
151 | 0.052 | ||
153 | 0.032 | ||
24 | VGL0760 | 12 | 0.004 |
13 | 0.164 | ||
14 | 0.400 | ||
18.2 | 0.016 | ||
19.2 | 0.092 | ||
20.2 | 0.148 | ||
21.2 | 0.036 | ||
22.2 | 0.072 | ||
23.2 | 0.068 | ||
25 | VGL0910 | 14 | 0.004 |
16.1 | 0.076 | ||
17.1 | 0.268 | ||
18.1 | 0.100 | ||
19.1 | 0.128 | ||
20.1 | 0.040 | ||
21.1 | 0.268 | ||
22.1 | 0.068 | ||
23.1 | 0.048 | ||
26 | VGL1063 | 8 | 0.060 |
9 | 0.024 | ||
12 | 0.144 | ||
13 | 0.072 | ||
14 | 0.096 | ||
15 | 0.076 | ||
16 | 0.024 | ||
17 | 0.080 | ||
18 | 0.032 | ||
19 | 0.100 | ||
20 | 0.244 | ||
21 | 0.036 | ||
22 | 0.012 | ||
27 | VGL1165 | 18 | 0.008 |
19 | 0.028 | ||
20 | 0.036 | ||
21 | 0.284 | ||
22 | 0.008 | ||
23 | 0.008 | ||
24 | 0.020 | ||
25 | 0.020 | ||
26 | 0.516 | ||
27 | 0.048 | ||
28 | 0.020 | ||
31 | 0.004 | ||
28 | VGL1828 | 15 | 0.004 |
16 | 0.640 | ||
17 | 0.216 | ||
19 | 0.004 | ||
20 | 0.076 | ||
21 | 0.060 | ||
29 | VGL2009 | 9 | 0.128 |
10 | 0.272 | ||
11 | 0.016 | ||
13 | 0.284 | ||
14 | 0.096 | ||
15 | 0.076 | ||
16 | 0.120 | ||
17 | 0.008 | ||
30 | VGL2409 | 13 | 0.004 |
14 | 0.004 | ||
15 | 0.036 | ||
16 | 0.020 | ||
17 | 0.036 | ||
18 | 0.856 | ||
19 | 0.044 | ||
31 | VGL2918 | 11 | 0.012 |
12 | 0.256 | ||
13 | 0.552 | ||
14 | 0.104 | ||
15 | 0.020 | ||
18.3 | 0.048 | ||
20.3 | 0.008 | ||
32 | VGL3008 | 10 | 0.012 |
12 | 0.004 | ||
13 | 0.016 | ||
14 | 0.008 | ||
15 | 0.500 | ||
16 | 0.080 | ||
17 | 0.212 | ||
18 | 0.024 | ||
19 | 0.048 | ||
21 | 0.040 | ||
22 | 0.044 | ||
23 | 0.012 | ||
33 | VGL3235 | 11 | 0.004 |
12 | 0.008 | ||
14 | 0.288 | ||
15 | 0.020 | ||
16 | 0.664 | ||
17 | 0.004 | ||
18 | 0.004 | ||
19 | 0.008 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 125 | 7.303 | 3.029 | 0.613 | 0.610 | -0.006 | |
SE | 0.367 | 0.239 | 0.027 | 0.027 | 0.011 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 125 | 6.000 | 1.564 | 0.355 | 0.344 | -0.022 | |
SE | 0.535 | 0.091 | 0.046 | 0.040 | 0.025 |
Standard genetic assessment for individual STR loci
Scottish Collie
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 125 | 8 | 3.995 | 0.784 | 0.750 | -0.046 |
2 | AHT137 | 125 | 7 | 3.293 | 0.736 | 0.696 | -0.057 |
3 | AHTH130 | 125 | 10 | 2.231 | 0.544 | 0.552 | 0.014 |
4 | AHTh171-A | 125 | 7 | 4.061 | 0.736 | 0.754 | 0.024 |
5 | AHTh260 | 125 | 7 | 2.559 | 0.624 | 0.609 | -0.024 |
6 | AHTk211 | 125 | 5 | 1.969 | 0.536 | 0.492 | -0.089 |
7 | AHTk253 | 125 | 5 | 2.005 | 0.552 | 0.501 | -0.101 |
8 | C22.279 | 125 | 7 | 2.763 | 0.616 | 0.638 | 0.035 |
9 | FH2001 | 125 | 8 | 3.949 | 0.744 | 0.747 | 0.004 |
10 | FH2054 | 125 | 8 | 2.718 | 0.576 | 0.632 | 0.089 |
11 | FH2848 | 125 | 9 | 3.975 | 0.824 | 0.748 | -0.101 |
12 | INRA21 | 125 | 6 | 3.098 | 0.656 | 0.677 | 0.031 |
13 | INU005 | 125 | 5 | 2.072 | 0.512 | 0.517 | 0.010 |
14 | INU030 | 125 | 5 | 2.394 | 0.544 | 0.582 | 0.066 |
15 | INU055 | 125 | 5 | 1.560 | 0.312 | 0.359 | 0.131 |
16 | LEI004 | 125 | 5 | 1.266 | 0.208 | 0.210 | 0.009 |
17 | REN105L03 | 125 | 7 | 4.244 | 0.752 | 0.764 | 0.016 |
18 | REN162C04 | 125 | 5 | 4.183 | 0.800 | 0.761 | -0.051 |
19 | REN169D01 | 125 | 6 | 1.888 | 0.480 | 0.470 | -0.020 |
20 | REN169O18 | 125 | 6 | 2.096 | 0.512 | 0.523 | 0.021 |
21 | REN247M23 | 125 | 5 | 2.067 | 0.544 | 0.516 | -0.054 |
22 | REN54P11 | 125 | 8 | 2.189 | 0.576 | 0.543 | -0.060 |
23 | REN64E19 | 125 | 6 | 2.439 | 0.544 | 0.590 | 0.078 |
24 | VGL0760 | 125 | 9 | 4.374 | 0.816 | 0.771 | -0.058 |
25 | VGL0910 | 125 | 9 | 5.424 | 0.760 | 0.816 | 0.068 |
26 | VGL1063 | 125 | 13 | 8.060 | 0.816 | 0.876 | 0.068 |
27 | VGL1165 | 125 | 12 | 2.835 | 0.648 | 0.647 | -0.001 |
28 | VGL1828 | 125 | 6 | 2.147 | 0.552 | 0.534 | -0.033 |
29 | VGL2009 | 125 | 8 | 4.982 | 0.760 | 0.799 | 0.049 |
30 | VGL2409 | 125 | 7 | 1.356 | 0.256 | 0.262 | 0.024 |
31 | VGL2918 | 125 | 7 | 2.604 | 0.656 | 0.616 | -0.065 |
32 | VGL3008 | 125 | 12 | 3.243 | 0.696 | 0.692 | -0.006 |
33 | VGL3235 | 125 | 8 | 1.907 | 0.560 | 0.476 | -0.177 |
Standard genetic assessment for 7 STRs in the DLA region
Scottish Collie
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 125 | 9 | 1.811 | 0.472 | 0.448 | -0.054 |
2 | DLA I-4ACA | 125 | 5 | 1.241 | 0.208 | 0.194 | -0.072 |
3 | DLA I-4BCT | 125 | 5 | 1.279 | 0.208 | 0.218 | 0.047 |
4 | DLA1131 | 125 | 7 | 1.777 | 0.464 | 0.437 | -0.061 |
5 | 5ACA | 125 | 5 | 1.762 | 0.472 | 0.432 | -0.092 |
6 | 5ACT | 125 | 5 | 1.351 | 0.232 | 0.260 | 0.106 |
7 | 5BCA | 125 | 6 | 1.728 | 0.432 | 0.421 | -0.025 |