Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Mar 27, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesScottish Collie (n=125)
1006387 375 293 1800.032
1008386 373 289 1820.008
1012388 369 289 1880.008
1014375 373 287 1780.004
1016382 371 277 1780.088
1045376 371 277 1860.732
1087380 371 277 1780.016
1094395 375 277 1760.008
1160386 369 289 1760.008
1191388 373 260 1860.004
1222386 379 277 1810.032
1223380 371 289 1810.056
1224385 371 277 1820.004

DLA Class II Haplotype Frequencies

DLA2 #STR typesScottish Collie (n=125)
2002343 327 2800.004
2003343 324 2820.016
2007351 327 2800.004
2012345 322 2800.008
2018339 324 2840.004
2031339 322 2820.016
2037341 327 2800.004
2039345 327 2760.720
2065339 325 2860.016
2080339 325 2760.016
2081343 322 2820.004
2089343 331 2760.008
2091343 327 2880.052
2097343 327 2760.004
2119343 324 2860.056
2120343 327 2860.032
2121351 327 2820.028
2126343 327 2820.008

Allele Frequencies

#Locus NameAlleleScottish Collie (n=125)
1AHT121 940.128
980.076
1000.352
1020.076
1040.312
1060.024
1080.012
1100.020
2AHT137 1310.036
1330.024
1370.456
1390.048
1450.020
1470.160
1510.256
3AHTH130 1130.004
1190.004
1210.036
1230.628
1250.008
1270.220
1290.036
1310.052
1330.008
1350.004
4AHTh171-A 2190.140
2210.340
2230.200
2250.028
2330.264
2350.024
2370.004
5AHTh260 2380.068
2400.012
2420.004
2460.576
2480.032
2500.208
2520.100
6AHTk211 870.012
890.672
910.016
950.224
970.076
7AHTk253 2840.016
2860.008
2880.600
2900.004
2920.372
8C22.279 1160.180
1180.060
1200.012
1240.540
1260.184
1280.008
1300.016
9FH2001 1240.004
1280.004
1320.268
1360.164
1400.060
1440.368
1480.124
1520.008
10FH2054 1480.012
1520.024
1560.068
1600.020
1680.116
1720.096
1760.576
1800.088
11FH2848 2300.012
2320.108
2340.288
2360.108
2380.376
2400.032
2420.044
2440.028
2460.004
12INRA21 910.064
950.156
970.468
990.036
1010.272
1050.004
13INU005 1100.004
1220.012
1240.524
1260.456
1300.004
14INU030 1440.068
1460.320
1500.032
1520.556
1540.024
15INU055 2080.004
2100.784
2120.040
2140.016
2180.156
16LEI004 850.012
950.884
970.008
1010.004
1070.092
17REN105L03 2270.296
2310.012
2330.280
2350.152
2370.036
2390.012
2410.212
18REN162C04 2000.068
2020.196
2040.292
2060.300
2080.144
19REN169D01 2020.056
2100.008
2120.704
2160.168
2180.016
2200.048
20REN169O18 1600.008
1620.652
1640.032
1660.048
1680.216
1700.044
21REN247M23 2660.364
2680.592
2700.008
2720.016
2780.020
22REN54P11 2220.544
2260.400
2300.004
2320.024
2340.012
2360.008
2400.004
2420.004
23REN64E19 1390.016
1430.028
1450.324
1470.548
1510.052
1530.032
24VGL0760 120.004
130.164
140.400
18.20.016
19.20.092
20.20.148
21.20.036
22.20.072
23.20.068
25VGL0910 140.004
16.10.076
17.10.268
18.10.100
19.10.128
20.10.040
21.10.268
22.10.068
23.10.048
26VGL1063 80.060
90.024
120.144
130.072
140.096
150.076
160.024
170.080
180.032
190.100
200.244
210.036
220.012
27VGL1165 180.008
190.028
200.036
210.284
220.008
230.008
240.020
250.020
260.516
270.048
280.020
310.004
28VGL1828 150.004
160.640
170.216
190.004
200.076
210.060
29VGL2009 90.128
100.272
110.016
130.284
140.096
150.076
160.120
170.008
30VGL2409 130.004
140.004
150.036
160.020
170.036
180.856
190.044
31VGL2918 110.012
120.256
130.552
140.104
150.020
18.30.048
20.30.008
32VGL3008 100.012
120.004
130.016
140.008
150.500
160.080
170.212
180.024
190.048
210.040
220.044
230.012
33VGL3235 110.004
120.008
140.288
150.020
160.664
170.004
180.004
190.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

  NNaNeHoHeF
Mean1257.3033.0290.6130.610-0.006
 SE 0.3670.2390.0270.0270.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

  NNaNeHoHeF
Mean1256.0001.5640.3550.344-0.022
 SE 0.5350.0910.0460.0400.025

Standard genetic assessment for individual STR loci

Scottish Collie

#LocusNNaNeHoHeF
1AHT12112583.9950.7840.750-0.046
2AHT13712573.2930.7360.696-0.057
3AHTH130125102.2310.5440.5520.014
4AHTh171-A12574.0610.7360.7540.024
5AHTh26012572.5590.6240.609-0.024
6AHTk21112551.9690.5360.492-0.089
7AHTk25312552.0050.5520.501-0.101
8C22.27912572.7630.6160.6380.035
9FH200112583.9490.7440.7470.004
10FH205412582.7180.5760.6320.089
11FH284812593.9750.8240.748-0.101
12INRA2112563.0980.6560.6770.031
13INU00512552.0720.5120.5170.010
14INU03012552.3940.5440.5820.066
15INU05512551.5600.3120.3590.131
16LEI00412551.2660.2080.2100.009
17REN105L0312574.2440.7520.7640.016
18REN162C0412554.1830.8000.761-0.051
19REN169D0112561.8880.4800.470-0.020
20REN169O1812562.0960.5120.5230.021
21REN247M2312552.0670.5440.516-0.054
22REN54P1112582.1890.5760.543-0.060
23REN64E1912562.4390.5440.5900.078
24VGL076012594.3740.8160.771-0.058
25VGL091012595.4240.7600.8160.068
26VGL1063125138.0600.8160.8760.068
27VGL1165125122.8350.6480.647-0.001
28VGL182812562.1470.5520.534-0.033
29VGL200912584.9820.7600.7990.049
30VGL240912571.3560.2560.2620.024
31VGL291812572.6040.6560.616-0.065
32VGL3008125123.2430.6960.692-0.006
33VGL323512581.9070.5600.476-0.177

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#LocusNNaNeHoHeF
1DLA I-3CCA12591.8110.4720.448-0.054
2DLA I-4ACA12551.2410.2080.194-0.072
3DLA I-4BCT12551.2790.2080.2180.047
4DLA113112571.7770.4640.437-0.061
55ACA12551.7620.4720.432-0.092
65ACT12551.3510.2320.2600.106
75BCA12561.7280.4320.421-0.025