Statistics and Breed-wide Allele Frequency - Scottish Collie

Updated Nov 20, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Scottish Collie (n=126)
1006	387 375 293 180	0.032
1008	386 373 289 182	0.008
1012	388 369 289 188	0.008
1014	375 373 287 178	0.004
1016	382 371 277 178	0.087
1045	376 371 277 186	0.734
1087	380 371 277 178	0.016
1094	395 375 277 176	0.008
1160	386 369 289 176	0.008
1191	388 373 260 186	0.004
1222	386 379 277 181	0.032
1223	380 371 289 181	0.056
1224	385 371 277 182	0.004

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Scottish Collie (n=126)
2002	343 327 280	0.004
2003	343 324 282	0.016
2007	351 327 280	0.004
2012	345 322 280	0.008
2018	339 324 284	0.004
2031	339 322 282	0.016
2037	341 327 280	0.004
2039	345 327 276	0.722
2065	339 325 286	0.016
2080	339 325 276	0.016
2081	343 322 282	0.004
2089	343 331 276	0.008
2091	343 327 288	0.052
2097	343 327 276	0.004
2119	343 324 286	0.056
2120	343 327 286	0.032
2121	351 327 282	0.028
2126	343 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Scottish Collie (n=126)
1	AHT121	94	0.131
		98	0.075
		100	0.349
		102	0.075
		104	0.313
		106	0.024
		108	0.012
		110	0.020
2	AHT137	131	0.040
		133	0.024
		137	0.456
		139	0.048
		145	0.020
		147	0.159
		151	0.254
3	AHTH130	113	0.004
		119	0.004
		121	0.040
		123	0.623
		125	0.008
		127	0.222
		129	0.036
		131	0.052
		133	0.008
		135	0.004
4	AHTh171-A	219	0.139
		221	0.337
		223	0.198
		225	0.028
		233	0.270
		235	0.024
		237	0.004
5	AHTh260	238	0.067
		240	0.012
		242	0.004
		246	0.575
		248	0.032
		250	0.210
		252	0.099
6	AHTk211	87	0.012
		89	0.671
		91	0.016
		95	0.226
		97	0.075
7	AHTk253	284	0.016
		286	0.012
		288	0.595
		290	0.004
		292	0.373
8	C22.279	116	0.179
		118	0.060
		120	0.012
		124	0.544
		126	0.183
		128	0.008
		130	0.016
9	FH2001	124	0.004
		128	0.004
		132	0.270
		136	0.163
		140	0.060
		144	0.369
		148	0.123
		152	0.008
10	FH2054	148	0.012
		152	0.024
		156	0.067
		160	0.020
		168	0.115
		172	0.095
		176	0.579
		180	0.087
11	FH2848	230	0.012
		232	0.107
		234	0.290
		236	0.107
		238	0.377
		240	0.032
		242	0.044
		244	0.028
		246	0.004
12	INRA21	91	0.063
		95	0.155
		97	0.468
		99	0.036
		101	0.274
		105	0.004
13	INU005	110	0.004
		122	0.012
		124	0.528
		126	0.452
		130	0.004
14	INU030	144	0.067
		146	0.321
		150	0.032
		152	0.556
		154	0.024
15	INU055	208	0.004
		210	0.786
		212	0.040
		214	0.016
		218	0.155
16	LEI004	85	0.012
		95	0.885
		97	0.008
		101	0.004
		107	0.091
17	REN105L03	227	0.294
		231	0.012
		233	0.282
		235	0.151
		237	0.036
		239	0.012
		241	0.214
18	REN162C04	200	0.067
		202	0.194
		204	0.294
		206	0.298
		208	0.147
19	REN169D01	202	0.056
		210	0.008
		212	0.702
		216	0.167
		218	0.016
		220	0.052
20	REN169O18	160	0.008
		162	0.651
		164	0.032
		166	0.048
		168	0.218
		170	0.044
21	REN247M23	266	0.365
		268	0.591
		270	0.008
		272	0.016
		278	0.020
22	REN54P11	222	0.544
		226	0.397
		230	0.004
		232	0.024
		234	0.016
		236	0.008
		240	0.004
		242	0.004
23	REN64E19	139	0.020
		143	0.028
		145	0.321
		147	0.548
		151	0.052
		153	0.032
24	VGL0760	12	0.004
		13	0.163
		14	0.405
		18.2	0.016
		19.2	0.091
		20.2	0.147
		21.2	0.036
		22.2	0.071
		23.2	0.067
25	VGL0910	14	0.004
		16.1	0.075
		17.1	0.270
		18.1	0.099
		19.1	0.131
		20.1	0.040
		21.1	0.266
		22.1	0.067
		23.1	0.048
26	VGL1063	8	0.060
		9	0.024
		12	0.143
		13	0.071
		14	0.095
		15	0.079
		16	0.024
		17	0.079
		18	0.032
		19	0.099
		20	0.246
		21	0.036
		22	0.012
27	VGL1165	18	0.008
		19	0.028
		20	0.036
		21	0.282
		22	0.008
		23	0.008
		24	0.020
		25	0.020
		26	0.520
		27	0.048
		28	0.020
		31	0.004
28	VGL1828	15	0.004
		16	0.635
		17	0.214
		19	0.004
		20	0.075
		21	0.067
29	VGL2009	9	0.127
		10	0.274
		11	0.016
		13	0.282
		14	0.099
		15	0.075
		16	0.119
		17	0.008
30	VGL2409	13	0.008
		14	0.004
		15	0.036
		16	0.020
		17	0.036
		18	0.853
		19	0.044
31	VGL2918	11	0.012
		12	0.254
		13	0.548
		14	0.111
		15	0.020
		18.3	0.048
		20.3	0.008
32	VGL3008	10	0.012
		12	0.004
		13	0.016
		14	0.008
		15	0.504
		16	0.079
		17	0.210
		18	0.024
		19	0.048
		21	0.040
		22	0.044
		23	0.012
33	VGL3235	11	0.004
		12	0.008
		14	0.290
		15	0.020
		16	0.663
		17	0.004
		18	0.004
		19	0.008

Standard genetic assessment based on 33 autosomal STR loci

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	126	7.303	3.026	0.614	0.610	-0.006
	SE		0.367	0.238	0.027	0.026	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Scottish Collie

		N	Na	Ne	Ho	He	F
	Mean	126	6.000	1.558	0.353	0.342	-0.020
	SE		0.535	0.090	0.046	0.040	0.025

Standard genetic assessment for individual STR loci

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	126	8	4.003	0.786	0.750	-0.047
2	AHT137	126	7	3.303	0.738	0.697	-0.059
3	AHTH130	126	10	2.256	0.548	0.557	0.016
4	AHTh171-A	126	7	4.055	0.730	0.753	0.031
5	AHTh260	126	7	2.558	0.627	0.609	-0.029
6	AHTk211	126	5	1.972	0.540	0.493	-0.095
7	AHTk253	126	5	2.025	0.556	0.506	-0.098
8	C22.279	126	7	2.741	0.611	0.635	0.038
9	FH2001	126	8	3.933	0.746	0.746	-0.000
10	FH2054	126	8	2.694	0.571	0.629	0.091
11	FH2848	126	9	3.955	0.825	0.747	-0.105
12	INRA21	126	6	3.091	0.659	0.676	0.026
13	INU005	126	5	2.069	0.508	0.517	0.017
14	INU030	126	5	2.392	0.548	0.582	0.059
15	INU055	126	5	1.555	0.310	0.357	0.133
16	LEI004	126	5	1.263	0.206	0.208	0.010
17	REN105L03	126	7	4.240	0.754	0.764	0.013
18	REN162C04	126	5	4.189	0.802	0.761	-0.053
19	REN169D01	126	6	1.897	0.484	0.473	-0.024
20	REN169O18	126	6	2.099	0.516	0.524	0.015
21	REN247M23	126	5	2.068	0.548	0.516	-0.060
22	REN54P11	126	8	2.203	0.579	0.546	-0.061
23	REN64E19	126	6	2.451	0.548	0.592	0.075
24	VGL0760	126	9	4.322	0.810	0.769	-0.053
25	VGL0910	126	9	5.418	0.762	0.815	0.066
26	VGL1063	126	13	8.022	0.817	0.875	0.066
27	VGL1165	126	12	2.814	0.643	0.645	0.003
28	VGL1828	126	6	2.177	0.548	0.541	-0.013
29	VGL2009	126	8	4.988	0.762	0.800	0.047
30	VGL2409	126	7	1.365	0.262	0.267	0.020
31	VGL2918	126	7	2.634	0.651	0.620	-0.049
32	VGL3008	126	12	3.211	0.690	0.689	-0.003
33	VGL3235	126	8	1.910	0.563	0.476	-0.183

Standard genetic assessment for 7 STRs in the DLA region

Scottish Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	126	9	1.801	0.468	0.445	-0.053
2	DLA I-4ACA	126	5	1.239	0.206	0.193	-0.071
3	DLA I-4BCT	126	5	1.276	0.206	0.217	0.047
4	DLA1131	126	7	1.769	0.460	0.435	-0.059
5	5ACA	126	5	1.754	0.468	0.430	-0.089
6	5ACT	126	5	1.347	0.230	0.258	0.107
7	5BCA	126	6	1.720	0.429	0.419	-0.024

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Scottish Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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