Statistics and Breed-wide Allele Frequency - Shikoku

Updated Feb 22, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=178)
1054	382 379 277 184	0.022
1091	381 371 277 181	0.006
1133	378 365 287 172	0.539
1191	388 373 260 186	0.177
1229	381 369 277 188	0.081
1230	386 369 289 184	0.020
1231	389 371 277 186	0.087
1232	380 365 260 186	0.067

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=178)
2012	345 322 280	0.067
2018	339 324 284	0.177
2056	339 323 286	0.062
2067	343 322 284	0.006
2071	339 322 286	0.020
2077	347 325 286	0.539
2106	341 325 286	0.022
2122	351 325 286	0.087
2123	339 323 292	0.020

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=178)
1	AHT121	96	0.396
		98	0.090
		100	0.188
		102	0.154
		106	0.140
		108	0.031
2	AHT137	131	0.758
		133	0.132
		147	0.073
		151	0.037
3	AHTH130	115	0.817
		117	0.003
		119	0.006
		121	0.157
		125	0.003
		127	0.003
		133	0.011
4	AHTh171-A	219	0.963
		221	0.022
		235	0.003
		237	0.011
5	AHTh260	236	0.331
		246	0.140
		248	0.528
6	AHTk211	89	0.829
		91	0.028
		95	0.143
7	AHTk253	282	0.337
		286	0.152
		288	0.354
		290	0.025
		292	0.107
		294	0.025
8	C22.279	110	0.230
		116	0.424
		118	0.270
		122	0.053
		130	0.022
9	FH2001	132	0.107
		136	0.037
		140	0.312
		144	0.154
		148	0.225
		152	0.017
		154	0.146
		158	0.003
10	FH2054	148	0.006
		152	0.028
		156	0.346
		160	0.126
		164	0.053
		168	0.424
		172	0.017
11	FH2848	230	0.037
		234	0.006
		238	0.860
		240	0.098
12	INRA21	95	0.003
		97	0.466
		99	0.121
		101	0.410
13	INU005	110	0.025
		124	0.671
		126	0.303
14	INU030	144	0.410
		146	0.340
		152	0.250
15	INU055	210	0.045
		214	0.006
		220	0.301
		222	0.643
		224	0.006
16	LEI004	95	0.390
		97	0.539
		107	0.056
		109	0.014
17	REN105L03	227	0.374
		231	0.149
		233	0.250
		239	0.129
		241	0.098
18	REN162C04	200	0.104
		206	0.888
		210	0.008
19	REN169D01	202	0.048
		212	0.553
		214	0.006
		216	0.393
20	REN169O18	160	0.348
		164	0.562
		168	0.022
		172	0.067
21	REN247M23	268	0.416
		270	0.104
		272	0.480
22	REN54P11	230	0.084
		236	0.250
		238	0.666
23	REN64E19	145	0.079
		147	0.011
		151	0.860
		153	0.051
24	VGL0760	12	0.539
		13	0.107
		14	0.098
		21.2	0.006
		23.2	0.250
25	VGL0910	17.1	0.121
		18.1	0.267
		19.1	0.553
		20.1	0.037
		24.1	0.020
		25.1	0.003
26	VGL1063	13	0.042
		14	0.772
		15	0.177
		16	0.003
		19	0.003
		20	0.003
27	VGL1165	20	0.728
		22	0.096
		23	0.006
		26	0.011
		28.2	0.160
28	VGL1828	18	0.104
		19	0.514
		20	0.149
		21	0.143
		22	0.090
29	VGL2009	10	0.062
		11	0.174
		13	0.638
		14	0.017
		15	0.110
30	VGL2409	13.3	0.379
		14	0.011
		14.3	0.003
		15	0.242
		15.3	0.031
		16	0.242
		17	0.022
		18	0.070
31	VGL2918	13	0.244
		14	0.480
		15	0.045
		16	0.003
		17.3	0.197
		19.3	0.031
32	VGL3008	11	0.003
		12	0.466
		13	0.062
		15	0.357
		16	0.003
		17	0.039
		18	0.070
33	VGL3235	12	0.076
		15	0.065
		16	0.112
		17	0.011
		18	0.736

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	178	4.848	2.434	0.532	0.528	-0.007
	SE		0.254	0.158	0.032	0.031	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	178	5.000	2.404	0.536	0.574	0.067
	SE		0.404	0.131	0.025	0.026	0.007

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	178	6	4.083	0.820	0.755	-0.086
2	AHT137	178	4	1.669	0.438	0.401	-0.094
3	AHTH130	178	7	1.443	0.287	0.307	0.066
4	AHTh171-A	178	4	1.076	0.073	0.071	-0.028
5	AHTh260	178	3	2.448	0.618	0.592	-0.045
6	AHTk211	178	3	1.412	0.326	0.292	-0.116
7	AHTk253	178	6	3.642	0.730	0.725	-0.007
8	C22.279	178	5	3.236	0.747	0.691	-0.081
9	FH2001	178	8	4.856	0.742	0.794	0.066
10	FH2054	178	7	3.133	0.596	0.681	0.125
11	FH2848	178	4	1.334	0.258	0.250	-0.033
12	INRA21	178	4	2.499	0.612	0.600	-0.021
13	INU005	178	3	1.840	0.461	0.457	-0.009
14	INU030	178	3	2.888	0.646	0.654	0.012
15	INU055	178	5	1.975	0.427	0.494	0.135
16	LEI004	178	4	2.239	0.596	0.553	-0.076
17	REN105L03	178	5	3.990	0.753	0.749	-0.005
18	REN162C04	178	3	1.252	0.180	0.201	0.107
19	REN169D01	178	4	2.159	0.596	0.537	-0.109
20	REN169O18	178	4	2.262	0.590	0.558	-0.057
21	REN247M23	178	3	2.413	0.584	0.586	0.002
22	REN54P11	178	3	1.950	0.472	0.487	0.031
23	REN64E19	178	4	1.337	0.253	0.252	-0.002
24	VGL0760	178	5	2.670	0.596	0.626	0.048
25	VGL0910	178	6	2.540	0.624	0.606	-0.029
26	VGL1063	178	6	1.588	0.393	0.370	-0.062
27	VGL1165	178	5	1.772	0.399	0.436	0.085
28	VGL1828	178	5	3.069	0.725	0.674	-0.075
29	VGL2009	178	5	2.207	0.517	0.547	0.055
30	VGL2409	178	8	3.745	0.708	0.733	0.034
31	VGL2918	178	6	3.011	0.674	0.668	-0.009
32	VGL3008	178	7	2.817	0.674	0.645	-0.045
33	VGL3235	178	5	1.772	0.433	0.436	0.007

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	178	7	2.917	0.624	0.657	0.051
2	DLA I-4ACA	178	5	2.388	0.528	0.581	0.091
3	DLA I-4BCT	178	4	2.566	0.584	0.610	0.043
4	DLA1131	178	5	2.444	0.545	0.591	0.078
5	5ACA	178	6	2.626	0.567	0.619	0.084
6	5ACT	178	4	2.139	0.506	0.532	0.050
7	5BCA	178	4	1.749	0.399	0.428	0.069

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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