Statistics and Breed-wide Allele Frequency - Shikoku

Updated Nov 20, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=151)
1054	382 379 277 184	0.017
1091	381 371 277 181	0.007
1133	378 365 287 172	0.553
1191	388 373 260 186	0.179
1229	381 369 277 188	0.096
1230	386 369 289 184	0.017
1231	389 371 277 186	0.096
1232	380 365 260 186	0.036

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=151)
2012	345 322 280	0.036
2018	339 324 284	0.179
2056	339 323 286	0.073
2067	343 322 284	0.007
2071	339 322 286	0.017
2077	347 325 286	0.553
2106	341 325 286	0.017
2122	351 325 286	0.096
2123	339 323 292	0.023

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=151)
1	AHT121	96	0.394
		98	0.079
		100	0.199
		102	0.149
		106	0.152
		108	0.026
2	AHT137	131	0.755
		133	0.126
		147	0.076
		151	0.043
3	AHTH130	115	0.805
		117	0.003
		119	0.007
		121	0.166
		125	0.003
		127	0.003
		133	0.013
4	AHTh171-A	219	0.967
		221	0.017
		235	0.003
		237	0.013
5	AHTh260	236	0.338
		246	0.132
		248	0.530
6	AHTk211	89	0.821
		91	0.033
		95	0.146
7	AHTk253	282	0.328
		286	0.146
		288	0.374
		290	0.030
		292	0.099
		294	0.023
8	C22.279	110	0.252
		116	0.394
		118	0.281
		122	0.053
		130	0.020
9	FH2001	132	0.123
		136	0.030
		140	0.315
		144	0.175
		148	0.195
		152	0.017
		154	0.142
		158	0.003
10	FH2054	148	0.007
		152	0.030
		156	0.351
		160	0.123
		164	0.040
		168	0.440
		172	0.010
11	FH2848	230	0.033
		234	0.007
		238	0.881
		240	0.079
12	INRA21	95	0.003
		97	0.487
		99	0.106
		101	0.404
13	INU005	110	0.030
		124	0.675
		126	0.295
14	INU030	144	0.401
		146	0.328
		152	0.272
15	INU055	210	0.040
		214	0.007
		220	0.318
		222	0.629
		224	0.007
16	LEI004	95	0.397
		97	0.543
		107	0.043
		109	0.017
17	REN105L03	227	0.321
		231	0.142
		233	0.291
		239	0.136
		241	0.109
18	REN162C04	200	0.123
		206	0.868
		210	0.010
19	REN169D01	202	0.056
		212	0.543
		214	0.007
		216	0.394
20	REN169O18	160	0.328
		164	0.579
		168	0.020
		172	0.073
21	REN247M23	268	0.394
		270	0.123
		272	0.483
22	REN54P11	230	0.089
		236	0.255
		238	0.656
23	REN64E19	145	0.076
		147	0.013
		151	0.858
		153	0.053
24	VGL0760	12	0.576
		13	0.093
		14	0.093
		21.2	0.007
		23.2	0.232
25	VGL0910	17.1	0.113
		18.1	0.278
		19.1	0.550
		20.1	0.036
		24.1	0.020
		25.1	0.003
26	VGL1063	13	0.040
		14	0.785
		15	0.166
		16	0.003
		19	0.003
		20	0.003
27	VGL1165	20	0.725
		22	0.096
		23	0.007
		26	0.013
		28.2	0.159
28	VGL1828	18	0.106
		19	0.530
		20	0.119
		21	0.162
		22	0.083
29	VGL2009	10	0.063
		11	0.185
		13	0.632
		14	0.017
		15	0.103
30	VGL2409	13.3	0.381
		14	0.013
		15	0.242
		15.3	0.030
		16	0.232
		17	0.020
		18	0.083
31	VGL2918	13	0.242
		14	0.477
		15	0.053
		16	0.003
		17.3	0.192
		19.3	0.033
32	VGL3008	11	0.003
		12	0.467
		13	0.063
		15	0.351
		16	0.003
		17	0.046
		18	0.066
33	VGL3235	12	0.063
		15	0.066
		16	0.116
		17	0.010
		18	0.745

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	151	4.818	2.432	0.530	0.528	-0.002
	SE		0.244	0.160	0.032	0.031	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	151	5.000	2.341	0.500	0.562	0.110
	SE		0.404	0.130	0.026	0.029	0.008

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	151	6	4.046	0.841	0.753	-0.117
2	AHT137	151	4	1.685	0.444	0.407	-0.091
3	AHTH130	151	7	1.481	0.298	0.325	0.083
4	AHTh171-A	151	4	1.069	0.066	0.065	-0.024
5	AHTh260	151	3	2.425	0.609	0.588	-0.037
6	AHTk211	151	3	1.435	0.338	0.303	-0.114
7	AHTk253	151	6	3.572	0.735	0.720	-0.021
8	C22.279	151	5	3.322	0.748	0.699	-0.071
9	FH2001	151	8	4.893	0.742	0.796	0.068
10	FH2054	151	7	2.987	0.596	0.665	0.104
11	FH2848	151	4	1.277	0.219	0.217	-0.008
12	INRA21	151	4	2.431	0.596	0.589	-0.013
13	INU005	151	3	1.838	0.470	0.456	-0.031
14	INU030	151	3	2.926	0.636	0.658	0.034
15	INU055	151	5	2.006	0.430	0.501	0.142
16	LEI004	151	4	2.198	0.596	0.545	-0.093
17	REN105L03	151	5	4.189	0.775	0.761	-0.018
18	REN162C04	151	3	1.303	0.212	0.232	0.088
19	REN169D01	151	4	2.206	0.603	0.547	-0.102
20	REN169O18	151	4	2.227	0.570	0.551	-0.034
21	REN247M23	151	3	2.475	0.616	0.596	-0.033
22	REN54P11	151	3	1.989	0.497	0.497	0.001
23	REN64E19	151	4	1.344	0.252	0.256	0.016
24	VGL0760	151	5	2.482	0.563	0.597	0.057
25	VGL0910	151	6	2.539	0.609	0.606	-0.005
26	VGL1063	151	6	1.551	0.358	0.355	-0.007
27	VGL1165	151	5	1.784	0.391	0.439	0.111
28	VGL1828	151	5	2.947	0.702	0.661	-0.062
29	VGL2009	151	5	2.226	0.510	0.551	0.074
30	VGL2409	151	7	3.767	0.715	0.735	0.026
31	VGL2918	151	6	3.062	0.682	0.673	-0.013
32	VGL3008	151	7	2.843	0.649	0.648	-0.001
33	VGL3235	151	5	1.733	0.411	0.423	0.029

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	151	7	2.782	0.576	0.641	0.101
2	DLA I-4ACA	151	5	2.482	0.523	0.597	0.124
3	DLA I-4BCT	151	4	2.508	0.556	0.601	0.075
4	DLA1131	151	5	2.421	0.517	0.587	0.120
5	5ACA	151	6	2.490	0.510	0.598	0.148
6	5ACT	151	4	2.050	0.464	0.512	0.095
7	5BCA	151	4	1.650	0.351	0.394	0.109

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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