Statistics and Breed-wide Allele Frequency - Shikoku

Updated Feb 25, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shikoku (n=181)
1054	382 379 277 184	0.022
1091	381 371 277 181	0.006
1133	378 365 287 172	0.539
1191	388 373 260 186	0.182
1229	381 369 277 188	0.080
1230	386 369 289 184	0.019
1231	389 371 277 186	0.086
1232	380 365 260 186	0.066

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shikoku (n=181)
2012	345 322 280	0.066
2018	339 324 284	0.182
2056	339 323 286	0.061
2067	343 322 284	0.006
2071	339 322 286	0.019
2077	347 325 286	0.539
2106	341 325 286	0.022
2122	351 325 286	0.086
2123	339 323 292	0.019

Allele Frequencies

#	Locus Name	Allele	Shikoku (n=181)
1	AHT121	96	0.398
		98	0.088
		100	0.185
		102	0.152
		106	0.146
		108	0.030
2	AHT137	131	0.760
		133	0.133
		147	0.072
		151	0.036
3	AHTH130	115	0.818
		117	0.003
		119	0.006
		121	0.157
		125	0.003
		127	0.003
		133	0.011
4	AHTh171-A	219	0.964
		221	0.022
		235	0.003
		237	0.011
5	AHTh260	236	0.329
		246	0.138
		248	0.533
6	AHTk211	89	0.829
		91	0.030
		95	0.141
7	AHTk253	282	0.331
		286	0.152
		288	0.362
		290	0.025
		292	0.105
		294	0.025
8	C22.279	110	0.229
		116	0.431
		118	0.265
		122	0.052
		130	0.022
9	FH2001	132	0.108
		136	0.036
		140	0.315
		144	0.155
		148	0.224
		152	0.017
		154	0.144
		158	0.003
10	FH2054	148	0.006
		152	0.028
		156	0.354
		160	0.124
		164	0.052
		168	0.420
		172	0.017
11	FH2848	230	0.036
		234	0.006
		238	0.862
		240	0.097
12	INRA21	95	0.003
		97	0.467
		99	0.119
		101	0.412
13	INU005	110	0.025
		124	0.677
		126	0.298
14	INU030	144	0.406
		146	0.340
		152	0.254
15	INU055	210	0.044
		214	0.006
		220	0.298
		222	0.646
		224	0.006
16	LEI004	95	0.398
		97	0.533
		107	0.055
		109	0.014
17	REN105L03	227	0.373
		231	0.146
		233	0.254
		239	0.130
		241	0.097
18	REN162C04	200	0.105
		206	0.887
		210	0.008
19	REN169D01	202	0.050
		212	0.544
		214	0.006
		216	0.401
20	REN169O18	160	0.348
		164	0.564
		168	0.022
		172	0.066
21	REN247M23	268	0.425
		270	0.102
		272	0.472
22	REN54P11	230	0.088
		236	0.249
		238	0.663
23	REN64E19	145	0.077
		147	0.011
		151	0.859
		153	0.052
24	VGL0760	12	0.539
		13	0.105
		14	0.097
		21.2	0.006
		23.2	0.254
25	VGL0910	17.1	0.119
		18.1	0.262
		19.1	0.555
		20.1	0.036
		24.1	0.025
		25.1	0.003
26	VGL1063	13	0.050
		14	0.768
		15	0.174
		16	0.003
		19	0.003
		20	0.003
27	VGL1165	20	0.727
		22	0.094
		23	0.006
		26	0.011
		28.2	0.163
28	VGL1828	18	0.102
		19	0.508
		20	0.155
		21	0.146
		22	0.088
29	VGL2009	10	0.061
		11	0.177
		13	0.635
		14	0.019
		15	0.108
30	VGL2409	13.3	0.378
		14	0.011
		14.3	0.003
		15	0.238
		15.3	0.030
		16	0.240
		17	0.022
		18	0.077
31	VGL2918	13	0.246
		14	0.481
		15	0.044
		16	0.003
		17.3	0.196
		19.3	0.030
32	VGL3008	11	0.003
		12	0.470
		13	0.066
		15	0.351
		16	0.003
		17	0.039
		18	0.069
33	VGL3235	12	0.075
		15	0.064
		16	0.110
		17	0.014
		18	0.738

Standard genetic assessment based on 33 autosomal STR loci

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	181	4.848	2.433	0.531	0.528	-0.006
	SE		0.254	0.158	0.032	0.031	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shikoku

		N	Na	Ne	Ho	He	F
	Mean	181	5.000	2.405	0.544	0.575	0.054
	SE		0.404	0.129	0.025	0.026	0.006

Standard genetic assessment for individual STR loci

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	181	6	4.069	0.812	0.754	-0.077
2	AHT137	181	4	1.664	0.436	0.399	-0.094
3	AHTH130	181	7	1.442	0.287	0.306	0.062
4	AHTh171-A	181	4	1.075	0.072	0.070	-0.027
5	AHTh260	181	3	2.431	0.613	0.589	-0.042
6	AHTk211	181	3	1.413	0.326	0.292	-0.115
7	AHTk253	181	6	3.621	0.724	0.724	0.000
8	C22.279	181	5	3.207	0.740	0.688	-0.076
9	FH2001	181	8	4.831	0.746	0.793	0.059
10	FH2054	181	7	3.119	0.591	0.679	0.130
11	FH2848	181	4	1.327	0.254	0.246	-0.031
12	INRA21	181	4	2.491	0.619	0.599	-0.034
13	INU005	181	3	1.826	0.453	0.452	-0.002
14	INU030	181	3	2.899	0.641	0.655	0.022
15	INU055	181	5	1.965	0.425	0.491	0.134
16	LEI004	181	4	2.244	0.591	0.554	-0.067
17	REN105L03	181	5	3.979	0.757	0.749	-0.011
18	REN162C04	181	3	1.254	0.182	0.203	0.100
19	REN169D01	181	4	2.178	0.591	0.541	-0.093
20	REN169O18	181	4	2.254	0.591	0.556	-0.062
21	REN247M23	181	3	2.412	0.575	0.585	0.019
22	REN54P11	181	3	1.964	0.481	0.491	0.021
23	REN64E19	181	4	1.339	0.254	0.253	-0.004
24	VGL0760	181	5	2.666	0.602	0.625	0.036
25	VGL0910	181	6	2.543	0.624	0.607	-0.029
26	VGL1063	181	6	1.606	0.403	0.377	-0.068
27	VGL1165	181	5	1.775	0.403	0.437	0.076
28	VGL1828	181	5	3.106	0.729	0.678	-0.076
29	VGL2009	181	5	2.219	0.519	0.549	0.055
30	VGL2409	181	8	3.774	0.707	0.735	0.038
31	VGL2918	181	6	3.004	0.669	0.667	-0.002
32	VGL3008	181	7	2.823	0.674	0.646	-0.044
33	VGL3235	181	5	1.767	0.431	0.434	0.007

Standard genetic assessment for 7 STRs in the DLA region

Shikoku

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	181	7	2.913	0.630	0.657	0.041
2	DLA I-4ACA	181	5	2.393	0.536	0.582	0.079
3	DLA I-4BCT	181	4	2.566	0.591	0.610	0.031
4	DLA1131	181	5	2.439	0.552	0.590	0.063
5	5ACA	181	6	2.619	0.575	0.618	0.071
6	5ACT	181	4	2.147	0.514	0.534	0.038
7	5BCA	181	4	1.761	0.409	0.432	0.054

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shikoku

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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