Updated Mar 28, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Poodle (n=5320) |
---|---|---|
1001 | 380 373 281 182 | 0.26673 |
1002 | 380 365 281 181 | 0.15959 |
1003 | 387 375 277 186 | 0.17472 |
1004 | 393 379 277 183 | 0.08383 |
1005 | 389 371 277 181 | 0.06739 |
1006 | 387 375 293 180 | 0.04812 |
1007 | 380 372 281 182 | 0.03430 |
1008 | 386 373 289 182 | 0.01297 |
1009 | 382 377 277 184 | 0.01457 |
1010 | 384 371 277 186 | 0.01147 |
1011 | 376 365 281 180 | 0.01983 |
1012 | 388 369 289 188 | 0.01504 |
1013 | 392 373 289 186 | 0.00874 |
1014 | 375 373 287 178 | 0.01109 |
1015 | 380 373 291 186 | 0.00132 |
1016 | 382 371 277 178 | 0.02143 |
1017 | 386 373 289 178 | 0.00254 |
1018 | 375 373 287 186 | 0.00902 |
1019 | 380 373 287 185 | 0.00310 |
1020 | 388 369 289 184 | 0.00301 |
1021 | 380 373 289 186 | 0.00179 |
1022 | 380 375 281 181 | 0.00009 |
1023 | 380 379 281 181 | 0.00009 |
1024 | 387 373 281 182 | 0.00009 |
1025 | 380 365 281 186 | 0.00019 |
1026 | 390 369 289 186 | 0.00348 |
1027 | 391 371 277 181 | 0.00047 |
1028 | 376 369 291 186 | 0.00094 |
1029 | 380 365 281 182 | 0.00169 |
1030 | 380 373 293 178 | 0.00216 |
1031 | 382 371 277 186 | 0.00132 |
1032 | 382 377 277 178 | 0.00009 |
1033 | 382 379 277 181 | 0.00348 |
1034 | 382 379 277 182 | 0.00056 |
1035 | 386 373 277 184 | 0.00009 |
1036 | 389 365 289 180 | 0.00160 |
1040 | 380 371 277 186 | 0.00056 |
1043 | 393 381 277 183 | 0.00150 |
1045 | 376 371 277 186 | 0.00066 |
1046 | 376 379 291 180 | 0.00038 |
1052 | 380 372 289 184 | 0.00038 |
1053 | 382 377 277 186 | 0.00019 |
1054 | 382 379 277 184 | 0.00019 |
1065 | 380 371 277 181 | 0.00019 |
1069 | 380 365 281 184 | 0.00009 |
1084 | 376 373 277 184 | 0.00028 |
1092 | 376 379 277 181 | 0.00019 |
1093 | 386 379 277 180 | 0.00047 |
1102 | 389 375 293 180 | 0.00009 |
1103 | 389 375 293 181 | 0.00019 |
1105 | 382 379 277 178 | 0.00376 |
1106 | 395 379 277 178 | 0.00009 |
1107 | 376 375 293 183 | 0.00019 |
1109 | 381 379 291 186 | 0.00113 |
1111 | 387 378 287 182 | 0.00009 |
1130 | 380 373 287 178 | 0.00009 |
1134 | 384 365 291 178 | 0.00019 |
1141 | 380 365 281 180 | 0.00019 |
1168 | 382 379 289 186 | 0.00019 |
1169 | 380 365 277 180 | 0.00103 |
1225 | 387 374 287 186 | 0.00009 |
1234 | 380 371 281 181 | 0.00019 |
1265 | 387 375 277 184 | 0.00009 |
1270 | 376 365 281 181 | 0.00009 |
1271 | 387 375 277 181 | 0.00019 |
1279 | 393 379 277 186 | 0.00009 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Poodle (n=5320) |
---|---|---|
2001 | 343 324 284 | 0.59972 |
2002 | 343 327 280 | 0.08524 |
2003 | 343 324 282 | 0.10414 |
2004 | 351 327 268 | 0.02951 |
2005 | 339 322 280 | 0.01588 |
2006 | 339 325 280 | 0.03430 |
2007 | 351 327 280 | 0.01682 |
2008 | 339 327 276 | 0.01466 |
2009 | 351 324 280 | 0.00742 |
2010 | 345 329 280 | 0.01147 |
2011 | 345 322 284 | 0.01992 |
2012 | 345 322 280 | 0.00724 |
2013 | 345 327 284 | 0.01062 |
2014 | 339 322 284 | 0.01955 |
2015 | 339 327 280 | 0.00404 |
2016 | 339 323 284 | 0.00329 |
2017 | 343 322 280 | 0.00216 |
2019 | 345 324 284 | 0.00009 |
2020 | 349 324 284 | 0.00019 |
2021 | 339 324 268 | 0.00385 |
2022 | 339 327 282 | 0.00047 |
2023 | 341 323 282 | 0.00216 |
2024 | 343 323 280 | 0.00066 |
2025 | 351 321 280 | 0.00160 |
2026 | 351 324 284 | 0.00103 |
2028 | 345 327 288 | 0.00056 |
2032 | 339 323 280 | 0.00047 |
2035 | 341 323 280 | 0.00009 |
2037 | 341 327 280 | 0.00047 |
2039 | 345 327 276 | 0.00056 |
2040 | 345 327 280 | 0.00009 |
2048 | 339 331 282 | 0.00019 |
2050 | 341 327 284 | 0.00009 |
2053 | 343 324 280 | 0.00009 |
2064 | 351 327 284 | 0.00094 |
2066 | 339 324 280 | 0.00009 |
2101 | 341 324 280 | 0.00019 |
2115 | 343 327 284 | 0.00009 |
Allele Frequencies
# | Locus Name | Allele | Poodle (n=5321) |
---|---|---|---|
1 | AHT121 | 92 | 0.01240 |
94 | 0.02227 | ||
96 | 0.01231 | ||
98 | 0.31780 | ||
100 | 0.08664 | ||
102 | 0.00620 | ||
104 | 0.19602 | ||
106 | 0.08241 | ||
108 | 0.17346 | ||
110 | 0.06690 | ||
112 | 0.02330 | ||
114 | 0.00019 | ||
116 | 0.00009 | ||
2 | AHT137 | 131 | 0.23036 |
133 | 0.01034 | ||
135 | 0.00038 | ||
137 | 0.17594 | ||
139 | 0.00047 | ||
141 | 0.36692 | ||
143 | 0.01306 | ||
145 | 0.04718 | ||
147 | 0.05630 | ||
149 | 0.00226 | ||
151 | 0.09662 | ||
153 | 0.00019 | ||
3 | AHTH130 | 111 | 0.01686 |
117 | 0.00248 | ||
119 | 0.38236 | ||
121 | 0.13955 | ||
123 | 0.07897 | ||
125 | 0.00086 | ||
127 | 0.13164 | ||
129 | 0.21671 | ||
131 | 0.01572 | ||
133 | 0.01267 | ||
135 | 0.00219 | ||
4 | AHTh171-A | 217 | 0.00639 |
219 | 0.36873 | ||
221 | 0.23323 | ||
223 | 0.00639 | ||
225 | 0.14415 | ||
227 | 0.00930 | ||
229 | 0.04933 | ||
231 | 0.02067 | ||
233 | 0.00113 | ||
235 | 0.14086 | ||
237 | 0.01983 | ||
5 | AHTh260 | 238 | 0.57069 |
240 | 0.02905 | ||
242 | 0.00028 | ||
244 | 0.05819 | ||
246 | 0.19111 | ||
248 | 0.06486 | ||
250 | 0.03412 | ||
252 | 0.03704 | ||
254 | 0.00630 | ||
256 | 0.00837 | ||
6 | AHTk211 | 87 | 0.18352 |
89 | 0.03947 | ||
91 | 0.67299 | ||
93 | 0.00366 | ||
95 | 0.10017 | ||
97 | 0.00019 | ||
7 | AHTk253 | 280 | 0.00930 |
284 | 0.12939 | ||
286 | 0.11351 | ||
288 | 0.40575 | ||
290 | 0.21528 | ||
292 | 0.12601 | ||
296 | 0.00075 | ||
8 | C22.279 | 116 | 0.08015 |
118 | 0.40058 | ||
120 | 0.00423 | ||
124 | 0.35867 | ||
126 | 0.06784 | ||
128 | 0.02142 | ||
130 | 0.06700 | ||
134 | 0.00009 | ||
9 | FH2001 | 124 | 0.02040 |
132 | 0.42123 | ||
136 | 0.07144 | ||
140 | 0.01814 | ||
144 | 0.24243 | ||
148 | 0.21245 | ||
152 | 0.01269 | ||
158 | 0.00122 | ||
10 | FH2054 | 148 | 0.01024 |
152 | 0.03130 | ||
156 | 0.55009 | ||
160 | 0.01720 | ||
164 | 0.00348 | ||
168 | 0.29680 | ||
172 | 0.07857 | ||
176 | 0.01128 | ||
180 | 0.00103 | ||
11 | FH2848 | 230 | 0.01579 |
232 | 0.01598 | ||
234 | 0.01119 | ||
236 | 0.05330 | ||
238 | 0.13800 | ||
240 | 0.68810 | ||
242 | 0.07708 | ||
244 | 0.00019 | ||
246 | 0.00038 | ||
12 | INRA21 | 91 | 0.35397 |
93 | 0.00009 | ||
95 | 0.40321 | ||
97 | 0.04727 | ||
99 | 0.05591 | ||
101 | 0.11483 | ||
103 | 0.00771 | ||
105 | 0.01410 | ||
109 | 0.00291 | ||
13 | INU005 | 110 | 0.01973 |
120 | 0.00009 | ||
122 | 0.00056 | ||
124 | 0.51391 | ||
126 | 0.44879 | ||
128 | 0.00188 | ||
130 | 0.01212 | ||
132 | 0.00047 | ||
138 | 0.00244 | ||
14 | INU030 | 144 | 0.31855 |
146 | 0.14950 | ||
148 | 0.06493 | ||
150 | 0.08730 | ||
152 | 0.37850 | ||
154 | 0.00085 | ||
156 | 0.00028 | ||
158 | 0.00009 | ||
15 | INU055 | 208 | 0.00169 |
210 | 0.22054 | ||
212 | 0.06005 | ||
214 | 0.29515 | ||
216 | 0.36760 | ||
218 | 0.03862 | ||
220 | 0.01503 | ||
222 | 0.00132 | ||
16 | LEI004 | 85 | 0.65514 |
95 | 0.09970 | ||
97 | 0.00470 | ||
105 | 0.00075 | ||
107 | 0.20833 | ||
109 | 0.03139 | ||
17 | REN105L03 | 227 | 0.01053 |
231 | 0.27594 | ||
233 | 0.19991 | ||
235 | 0.00724 | ||
237 | 0.01513 | ||
239 | 0.01212 | ||
241 | 0.47885 | ||
243 | 0.00028 | ||
18 | REN162C04 | 200 | 0.02068 |
202 | 0.17068 | ||
204 | 0.06664 | ||
206 | 0.54633 | ||
208 | 0.09051 | ||
210 | 0.06551 | ||
212 | 0.03966 | ||
19 | REN169D01 | 202 | 0.00961 |
210 | 0.00122 | ||
212 | 0.07129 | ||
214 | 0.00094 | ||
216 | 0.40723 | ||
218 | 0.26107 | ||
220 | 0.00188 | ||
222 | 0.04916 | ||
224 | 0.17489 | ||
226 | 0.02270 | ||
20 | REN169O18 | 156 | 0.00132 |
160 | 0.03327 | ||
162 | 0.56955 | ||
164 | 0.31466 | ||
166 | 0.01645 | ||
168 | 0.02368 | ||
170 | 0.03242 | ||
172 | 0.00865 | ||
21 | REN247M23 | 266 | 0.03449 |
268 | 0.52453 | ||
270 | 0.23468 | ||
272 | 0.19906 | ||
274 | 0.00254 | ||
278 | 0.00470 | ||
22 | REN54P11 | 222 | 0.00207 |
226 | 0.26593 | ||
228 | 0.16848 | ||
230 | 0.00348 | ||
232 | 0.33387 | ||
234 | 0.21161 | ||
236 | 0.00423 | ||
238 | 0.00949 | ||
242 | 0.00085 | ||
23 | REN64E19 | 139 | 0.00235 |
143 | 0.00536 | ||
145 | 0.42558 | ||
147 | 0.24685 | ||
149 | 0.03430 | ||
153 | 0.25850 | ||
155 | 0.02706 | ||
24 | VGL0760 | 12 | 0.29643 |
13 | 0.00113 | ||
14 | 0.01438 | ||
15 | 0.00846 | ||
18 | 0.00160 | ||
19 | 0.08618 | ||
19.2 | 0.13788 | ||
20 | 0.03637 | ||
20.2 | 0.16306 | ||
21 | 0.00132 | ||
21.2 | 0.05291 | ||
22.2 | 0.01617 | ||
23.2 | 0.10902 | ||
24.2 | 0.05996 | ||
25.2 | 0.01466 | ||
26.2 | 0.00047 | ||
25 | VGL0910 | 12 | 0.00047 |
13 | 0.04811 | ||
14 | 0.01720 | ||
15 | 0.01889 | ||
15.1 | 0.01579 | ||
16 | 0.00019 | ||
16.1 | 0.00507 | ||
17.1 | 0.10600 | ||
18.1 | 0.27448 | ||
19 | 0.00009 | ||
19.1 | 0.13005 | ||
20.1 | 0.04012 | ||
21.1 | 0.27871 | ||
22 | 0.00742 | ||
22.1 | 0.02180 | ||
23 | 0.03045 | ||
23.1 | 0.00395 | ||
24 | 0.00122 | ||
26 | VGL1063 | 8 | 0.02763 |
9 | 0.00235 | ||
10 | 0.00009 | ||
11 | 0.00169 | ||
12 | 0.03467 | ||
13 | 0.15993 | ||
14 | 0.13917 | ||
15 | 0.08485 | ||
16 | 0.09923 | ||
17 | 0.03092 | ||
18 | 0.04445 | ||
19 | 0.29938 | ||
20 | 0.04200 | ||
21 | 0.02509 | ||
22 | 0.00686 | ||
23 | 0.00160 | ||
24 | 0.00009 | ||
27 | VGL1165 | 13 | 0.00009 |
14 | 0.00009 | ||
15 | 0.00677 | ||
16 | 0.04266 | ||
17 | 0.00338 | ||
18 | 0.01785 | ||
19 | 0.00949 | ||
20 | 0.00075 | ||
21 | 0.07968 | ||
22 | 0.00319 | ||
23 | 0.00273 | ||
24 | 0.01560 | ||
25 | 0.11389 | ||
25.3 | 0.00009 | ||
26 | 0.47754 | ||
27 | 0.10881 | ||
28 | 0.10928 | ||
29 | 0.00235 | ||
30 | 0.00432 | ||
31 | 0.00103 | ||
32 | 0.00028 | ||
34 | 0.00009 | ||
28 | VGL1828 | 14 | 0.03777 |
15 | 0.00056 | ||
16 | 0.04727 | ||
17 | 0.02189 | ||
18 | 0.08730 | ||
19 | 0.42793 | ||
20 | 0.33668 | ||
21 | 0.03383 | ||
22 | 0.00667 | ||
23 | 0.00009 | ||
29 | VGL2009 | 9 | 0.44973 |
10 | 0.00573 | ||
11 | 0.03571 | ||
12 | 0.04774 | ||
13 | 0.24422 | ||
14 | 0.18831 | ||
15 | 0.02838 | ||
16 | 0.00019 | ||
30 | VGL2409 | 13 | 0.03920 |
14 | 0.26340 | ||
15 | 0.18801 | ||
16 | 0.15238 | ||
17 | 0.19590 | ||
18 | 0.13724 | ||
19 | 0.02341 | ||
20 | 0.00047 | ||
31 | VGL2918 | 7 | 0.00009 |
12 | 0.00517 | ||
13 | 0.11201 | ||
14 | 0.20720 | ||
15 | 0.15843 | ||
16 | 0.04304 | ||
16.3 | 0.00150 | ||
17 | 0.00216 | ||
17.3 | 0.03242 | ||
18.3 | 0.02180 | ||
19.3 | 0.11643 | ||
20.3 | 0.11906 | ||
21.3 | 0.14236 | ||
22.3 | 0.03514 | ||
23.3 | 0.00319 | ||
32 | VGL3008 | 12 | 0.00009 |
13 | 0.01128 | ||
14 | 0.03458 | ||
15 | 0.23351 | ||
16 | 0.03824 | ||
17 | 0.50179 | ||
18 | 0.02509 | ||
18.2 | 0.00019 | ||
19 | 0.12930 | ||
20 | 0.02340 | ||
21 | 0.00244 | ||
23 | 0.00009 | ||
33 | VGL3235 | 12 | 0.15317 |
13 | 0.04924 | ||
14 | 0.15636 | ||
15 | 0.04586 | ||
16 | 0.30380 | ||
17 | 0.22148 | ||
18 | 0.06897 | ||
19 | 0.00113 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 5321 | 10.091 | 3.732 | 0.680 | 0.700 | 0.030 | |
SE | 0.645 | 0.229 | 0.017 | 0.017 | 0.003 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 5321 | 8.714 | 2.990 | 0.583 | 0.604 | 0.034 | |
SE | 1.173 | 0.466 | 0.057 | 0.059 | 0.006 |
Standard genetic assessment for individual STR loci
Poodle
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 5321 | 13 | 5.272 | 0.794 | 0.810 | 0.020 |
2 | AHT137 | 5321 | 12 | 4.280 | 0.753 | 0.766 | 0.018 |
3 | AHTH130 | 5321 | 11 | 4.221 | 0.735 | 0.763 | 0.037 |
4 | AHTh171-A | 5321 | 11 | 4.266 | 0.756 | 0.766 | 0.012 |
5 | AHTh260 | 5321 | 10 | 2.679 | 0.609 | 0.627 | 0.029 |
6 | AHTk211 | 5321 | 6 | 2.007 | 0.471 | 0.502 | 0.061 |
7 | AHTk253 | 5321 | 7 | 3.898 | 0.736 | 0.743 | 0.010 |
8 | C22.279 | 5321 | 8 | 3.278 | 0.706 | 0.695 | -0.017 |
9 | FH2001 | 5321 | 8 | 3.480 | 0.694 | 0.713 | 0.027 |
10 | FH2054 | 5321 | 9 | 2.510 | 0.599 | 0.602 | 0.005 |
11 | FH2848 | 5321 | 9 | 1.992 | 0.474 | 0.498 | 0.049 |
12 | INRA21 | 5321 | 9 | 3.261 | 0.671 | 0.693 | 0.032 |
13 | INU005 | 5321 | 9 | 2.146 | 0.511 | 0.534 | 0.043 |
14 | INU030 | 5321 | 8 | 3.585 | 0.693 | 0.721 | 0.038 |
15 | INU055 | 5321 | 8 | 3.620 | 0.711 | 0.724 | 0.017 |
16 | LEI004 | 5321 | 6 | 2.068 | 0.513 | 0.516 | 0.007 |
17 | REN105L03 | 5321 | 8 | 2.891 | 0.621 | 0.654 | 0.051 |
18 | REN162C04 | 5321 | 7 | 2.886 | 0.620 | 0.653 | 0.052 |
19 | REN169D01 | 5321 | 10 | 3.667 | 0.690 | 0.727 | 0.051 |
20 | REN169O18 | 5321 | 8 | 2.345 | 0.548 | 0.574 | 0.044 |
21 | REN247M23 | 5321 | 6 | 2.695 | 0.601 | 0.629 | 0.044 |
22 | REN54P11 | 5321 | 9 | 3.914 | 0.700 | 0.745 | 0.060 |
23 | REN64E19 | 5321 | 7 | 3.217 | 0.667 | 0.689 | 0.032 |
24 | VGL0760 | 5321 | 16 | 6.201 | 0.829 | 0.839 | 0.012 |
25 | VGL0910 | 5321 | 18 | 5.334 | 0.805 | 0.813 | 0.010 |
26 | VGL1063 | 5321 | 17 | 6.291 | 0.816 | 0.841 | 0.030 |
27 | VGL1165 | 5321 | 22 | 3.653 | 0.689 | 0.726 | 0.052 |
28 | VGL1828 | 5321 | 10 | 3.232 | 0.669 | 0.691 | 0.031 |
29 | VGL2009 | 5321 | 8 | 3.314 | 0.662 | 0.698 | 0.052 |
30 | VGL2409 | 5321 | 8 | 5.341 | 0.804 | 0.813 | 0.010 |
31 | VGL2918 | 5321 | 15 | 7.506 | 0.858 | 0.867 | 0.010 |
32 | VGL3008 | 5321 | 12 | 3.058 | 0.662 | 0.673 | 0.016 |
33 | VGL3235 | 5321 | 8 | 5.037 | 0.775 | 0.801 | 0.033 |
Standard genetic assessment for 7 STRs in the DLA region
Poodle
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 5321 | 15 | 3.445 | 0.686 | 0.710 | 0.033 |
2 | DLA I-4ACA | 5321 | 11 | 4.805 | 0.773 | 0.792 | 0.024 |
3 | DLA I-4BCT | 5321 | 6 | 2.562 | 0.587 | 0.610 | 0.038 |
4 | DLA1131 | 5321 | 9 | 4.643 | 0.757 | 0.785 | 0.035 |
5 | 5ACA | 5321 | 6 | 1.556 | 0.352 | 0.357 | 0.015 |
6 | 5ACT | 5321 | 8 | 1.830 | 0.442 | 0.454 | 0.026 |
7 | 5BCA | 5321 | 6 | 2.092 | 0.486 | 0.522 | 0.068 |