Statistics and Breed-wide Allele Frequency - Giant Schnauzer

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesGiant Schnauzer (n=253)
1006387 375 293 1800.049
1008386 373 289 1820.040
1011376 365 281 1800.012
1014375 373 287 1780.255
1016382 371 277 1780.038
1017386 373 289 1780.091
1054382 379 277 1840.004
1065380 371 277 1810.002
1068380 373 287 1810.045
1091381 371 277 1810.040
1092376 379 277 1810.253
1129382 371 277 1810.002
1159395 379 277 1810.168
1181381 371 277 1820.002

DLA Class II Haplotype Frequencies

DLA2 #STR typesGiant Schnauzer (n=253)
2001343 324 2840.008
2003343 324 2820.032
2005339 322 2800.008
2006339 325 2800.152
2007351 327 2800.049
2012345 322 2800.012
2014339 322 2840.002
2022339 327 2820.004
2031339 322 2820.038
2033339 323 2820.042
2037341 327 2800.356
2050341 327 2840.150
2053343 324 2800.053
2060343 323 2840.002
2083339 324 2820.002
2090339 322 2780.091

Allele Frequencies

#Locus NameAlleleGiant Schnauzer (n=253)
1AHT121 800.113
920.138
940.138
960.002
980.004
1000.002
1020.318
1040.101
1060.022
1080.091
1100.008
1120.053
1140.010
2AHT137 1310.057
1330.010
1370.004
1410.267
1430.002
1470.650
1490.006
1510.004
3AHTH130 1170.312
1190.059
1210.156
1250.026
1270.012
1290.150
1310.275
1330.008
1350.002
4AHTh171-A 2190.385
2210.040
2250.255
2270.002
2290.002
2330.271
2350.045
5AHTh260 2380.194
2400.255
2420.014
2460.445
2480.077
2500.008
2520.008
6AHTk211 870.553
910.271
930.069
950.107
7AHTk253 2840.014
2860.409
2880.176
2900.119
2920.194
2940.089
8C22.279 1160.107
1180.551
1220.024
1240.259
1260.059
9FH2001 1280.198
1320.053
1360.004
1440.389
1480.346
1520.008
1580.002
10FH2054 1440.014
1520.209
1560.269
1600.324
1640.002
1680.130
1720.051
11FH2848 2300.004
2320.030
2340.209
2360.022
2380.115
2400.540
2420.014
2440.067
12INRA21 950.455
970.016
990.016
1010.154
1030.166
1050.194
13INU005 1100.006
1220.004
1240.789
1260.115
1280.014
1300.004
1320.069
14INU030 1440.253
1460.267
1480.002
1500.204
1520.249
1540.026
15INU055 2080.002
2100.453
2140.077
2160.265
2180.178
2200.026
16LEI004 830.002
850.107
950.830
1030.002
1070.059
17REN105L03 2310.022
2330.921
2350.032
2390.002
2410.024
18REN162C04 2000.024
2020.259
2040.204
2060.312
2080.202
19REN169D01 2020.008
2100.006
2120.004
2160.872
2200.059
2220.051
20REN169O18 1600.144
1620.275
1640.008
1660.144
1680.275
1700.150
1720.004
21REN247M23 2680.563
2700.200
2720.208
2760.030
22REN54P11 2220.008
2260.233
2280.040
2320.022
2340.006
2360.455
2380.237
23REN64E19 1450.387
1470.253
1530.358
1550.002
24VGL0760 120.711
130.016
140.004
18.20.061
19.20.038
20.20.032
21.20.057
22.20.053
23.20.028
25VGL0910 160.065
16.10.010
170.004
17.10.241
18.10.093
19.10.283
20.10.180
21.10.032
22.10.081
23.10.010
24.10.002
26VGL1063 80.002
90.004
110.010
130.227
140.310
150.047
160.028
170.004
180.123
190.040
200.198
210.002
220.006
27VGL1165 150.105
160.140
170.269
180.004
190.136
210.004
220.063
260.065
270.002
280.004
290.160
300.045
330.002
28VGL1828 140.085
150.002
160.128
170.318
180.018
190.085
200.132
210.208
220.004
230.020
29VGL2009 90.006
110.047
120.030
130.601
140.091
150.223
160.002
30VGL2409 130.024
140.018
150.164
160.045
170.109
180.403
190.075
200.156
210.006
31VGL2918 110.004
120.253
130.182
140.077
150.010
160.006
17.30.150
18.30.172
19.30.107
20.30.030
21.30.008
22.30.002
32VGL3008 100.194
130.006
150.123
160.069
170.010
180.192
190.251
200.144
210.012
33VGL3235 130.275
140.472
150.142
160.069
180.042

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Giant SchnauzerMean2537.4853.5250.6230.6550.056
 SE 0.4500.2420.0310.0300.011

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Giant SchnauzerMean2535.2862.9540.6210.6370.024
 SE 0.4390.3670.0250.0290.014

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT121253135.7430.7750.8260.062
2AHT13725382.0100.5100.503-0.014
3AHTH13025394.4590.7550.7760.027
4AHTh171-A25373.4430.7270.710-0.025
5AHTh26025373.2630.7590.694-0.094
6AHTk21125342.5270.4900.6040.189
7AHTk25325363.8770.6920.7420.068
8C22.27925352.5870.5570.6130.092
9FH200125373.1930.6250.6870.091
10FH205425374.1490.7550.7590.005
11FH284825382.8230.6320.6460.021
12INRA2125363.3790.6480.7040.079
13INU00525371.5630.3280.3600.089
14INU03025364.1790.7190.7610.054
15INU05525363.1930.6050.6870.119
16LEI00425351.4210.2920.2960.012
17REN105L0325351.1760.1340.1500.103
18REN162C0425354.0460.7000.7530.071
19REN169D0125361.3060.1780.2340.240
20REN169O1825374.6470.7430.7850.053
21REN247M2325342.4940.5850.5990.023
22REN54P1125373.1310.6090.6810.106
23REN64E1925342.9240.6360.6580.033
24VGL076025391.9250.4190.4800.128
25VGL0910253115.2350.8140.809-0.006
26VGL1063253134.8370.7430.7930.063
27VGL1165253136.3490.8100.8430.038
28VGL1828253105.1680.7910.8060.020
29VGL200925372.3680.5340.5780.076
30VGL240925394.2690.7510.7660.019
31VGL2918253125.9670.8380.832-0.007
32VGL300825395.6140.7790.8220.053
33VGL323525353.0740.6360.6750.057

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA25385.3010.7750.8110.045
2DLA I-4ACA25352.6620.6090.6240.025
3DLA I-4BCT25352.7190.6010.6320.050
4DLA113125352.4240.6170.588-0.049
55ACA25352.6200.6050.6180.022
65ACT25352.7070.5850.6310.072
75BCA25342.2440.5530.5540.002