Statistics and Breed-wide Allele Frequency - Polish Lowland Sheepdog

Updated Jun 13, 2021

DLA Class I Haplotype Frequencies

DLA1 #STR typesPolish Lowland Sheepdog (n=30)Polski Owczarek Nizinny (n=1)
1016382 371 277 1780.03--
1040380 371 277 1860.650.5
1067376 373 277 1780.300.5
1156380 373 291 1780.02--

DLA Class II Haplotype Frequencies

DLA2 #STR typesPolish Lowland Sheepdog (n=30)Polski Owczarek Nizinny (n=1)
2014339 322 2840.680.5
2017343 322 2800.300.5
2098343 323 2820.02--

Allele Frequencies

#Locus NameAllelePolish Lowland Sheepdog (n=30)Polski Owczarek Nizinny (n=1)
1AHT121 1000.500.5
1020.37--
1040.03--
1060.100.5
2AHT137 1310.270.5
1450.730.5
3AHTH130 1210.12--
1270.300.5
1310.550.5
1330.03--
4AHTh171-A 2190.13--
2330.07--
2370.771.0
2390.03--
5AHTh260 2400.13--
2440.07--
2460.631.0
2500.17--
6AHTk211 870.32--
910.651.0
950.03--
7AHTk253 2840.10--
2900.601.0
2920.30--
8C22.279 1160.30--
1180.18--
1240.521.0
9FH2001 1320.970.5
1440.030.5
10FH2054 1520.030.5
1560.30--
1600.02--
1640.03--
1680.570.5
1720.03--
1760.02--
11FH2848 2320.230.5
2360.50--
2400.02--
2420.250.5
12INRA21 950.07--
1010.931.0
13INU005 1240.720.5
1280.230.5
1320.05--
14INU030 1440.58--
1500.301.0
1520.12--
15INU055 2040.18--
2100.520.5
2180.300.5
16LEI004 950.871.0
970.13--
17REN105L03 2270.02--
2310.600.5
2330.370.5
2410.02--
18REN162C04 2040.17--
2060.781.0
2100.05--
19REN169D01 2100.02--
2120.27--
2160.65--
2200.071.0
20REN169O18 1640.450.5
1660.03--
1700.520.5
21REN247M23 2660.101.0
2680.83--
2720.07--
22REN54P11 2280.301.0
2320.27--
2360.20--
2380.23--
23REN64E19 1470.25--
1490.05--
1530.701.0
24VGL0760 150.68--
20.20.18--
21.20.131.0
25VGL0910 130.02--
140.220.5
150.15--
160.220.5
19.10.08--
20.10.08--
21.10.22--
22.10.02--
26VGL1063 140.100.5
150.17--
160.40--
170.07--
180.25--
190.020.5
27VGL1165 170.150.5
260.47--
270.03--
280.08--
300.250.5
310.02--
28VGL1828 190.320.5
200.25--
210.25--
220.03--
230.130.5
240.02--
29VGL2009 100.15--
110.130.5
140.630.5
150.08--
30VGL2409 150.03--
170.721.0
180.08--
190.17--
31VGL2918 120.701.0
150.03--
17.30.27--
32VGL3008 150.300.5
160.08--
170.12--
180.280.5
190.22--
33VGL3235 130.10--
140.671.0
160.23--

Standard genetic assessment based on 33 autosomal STR loci

Polish Lowland Sheepdog

  NNaNeHoHeF
Mean313.7882.3640.5290.515-0.024
 SE 0.2450.1700.0340.0300.024

Polski Owczarek Nizinny

  NNaNeHoHeF
Mean11.4851.4850.4850.242-0.485
 SE 0.0870.0870.0870.0430.087

Standard genetic assessment based on 7 STRs in the DLA region

Polish Lowland Sheepdog

  NNaNeHoHeF
Mean312.2861.5930.2860.3300.094
 SE 0.1710.1340.0610.0710.027

Polski Owczarek Nizinny

  NNaNeHoHeF
Mean11.7141.7140.7140.357-0.714
 SE 0.1710.1710.1710.0850.171

Standard genetic assessment for individual STR loci

Polish Lowland Sheepdog

#LocusNNaNeHoHeF
1AHT1213142.5660.7740.610-0.269
2AHT1373121.6610.4840.398-0.216
3AHTH1303142.4480.5810.5920.018
4AHTh171-A3141.6100.3550.3790.063
5AHTh2603142.1600.4520.5370.159
6AHTk2113131.8790.5480.468-0.172
7AHTk2533132.1310.4190.5310.210
8C22.2793132.5060.7100.601-0.181
9FH20013121.1010.0970.092-0.051
10FH20543172.4520.5810.5920.019
11FH28483142.7810.6770.640-0.058
12INRA213121.1370.1290.121-0.069
13INU0053131.7710.2580.4350.407
14INU0303132.2960.4840.5650.143
15INU0553132.5520.6770.608-0.114
16LEI0043121.2900.2580.225-0.148
17REN105L033142.0230.4840.5060.043
18REN162C043131.5310.3870.347-0.115
19REN169D013142.1190.5160.5280.023
20REN169O183132.1210.6130.529-0.159
21REN247M233131.4900.3230.3290.019
22REN54P113143.8590.8060.741-0.088
23REN64E193131.7710.4520.435-0.037
24VGL07603132.0210.5160.505-0.022
25VGL09103185.5390.8710.819-0.063
26VGL10633163.9630.8060.748-0.079
27VGL11653163.2850.6770.6960.026
28VGL18283164.1070.9030.757-0.194
29VGL20093142.2510.6450.556-0.161
30VGL24093141.7850.3870.4400.120
31VGL29183131.7500.4520.429-0.053
32VGL30083154.1420.7100.7590.064
33VGL32353131.9260.4190.4810.128

Polski Owczarek Nizinny

#LocusNNaNeHoHeF
1AHT121122.0001.0000.500-1.000
2AHT137122.0001.0000.500-1.000
3AHTH130122.0001.0000.500-1.000
4AHTh171-A111.0000.0000.0000.000
5AHTh260111.0000.0000.0000.000
6AHTk211111.0000.0000.0000.000
7AHTk253111.0000.0000.0000.000
8C22.279111.0000.0000.0000.000
9FH2001122.0001.0000.500-1.000
10FH2054122.0001.0000.500-1.000
11FH2848122.0001.0000.500-1.000
12INRA21111.0000.0000.0000.000
13INU005122.0001.0000.500-1.000
14INU030111.0000.0000.0000.000
15INU055122.0001.0000.500-1.000
16LEI004111.0000.0000.0000.000
17REN105L03122.0001.0000.500-1.000
18REN162C04111.0000.0000.0000.000
19REN169D01111.0000.0000.0000.000
20REN169O18122.0001.0000.500-1.000
21REN247M23111.0000.0000.0000.000
22REN54P11111.0000.0000.0000.000
23REN64E19111.0000.0000.0000.000
24VGL0760111.0000.0000.0000.000
25VGL0910122.0001.0000.500-1.000
26VGL1063122.0001.0000.500-1.000
27VGL1165122.0001.0000.500-1.000
28VGL1828122.0001.0000.500-1.000
29VGL2009122.0001.0000.500-1.000
30VGL2409111.0000.0000.0000.000
31VGL2918111.0000.0000.0000.000
32VGL3008122.0001.0000.500-1.000
33VGL3235111.0000.0000.0000.000

Standard genetic assessment for 7 STRs in the DLA region

Polish Lowland Sheepdog

#LocusNNaNeHoHeF
1DLA I-3CCA3131.8790.3870.4680.172
2DLA I-4ACA3121.7760.3870.4370.114
3DLA I-4BCT3121.0330.0320.032-0.016
4DLA11313121.8450.3870.4580.155
55ACA3121.7760.3870.4370.114
65ACT3121.0330.0320.032-0.016
75BCA3131.8080.3870.4470.134

Polski Owczarek Nizinny

#LocusNNaNeHoHeF
1DLA I-3CCA122.0001.0000.500-1.000
2DLA I-4ACA122.0001.0000.500-1.000
3DLA I-4BCT111.0000.0000.0000.000
4DLA1131122.0001.0000.500-1.000
55ACA122.0001.0000.500-1.000
65ACT111.0000.0000.0000.000
75BCA122.0001.0000.500-1.000