Statistics and Breed-wide Allele Frequency - Polish Lowland Sheepdog

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesPolish Lowland Sheepdog (n=26)Polski Owczarek Nizinny (n=1)
1016382 371 277 1780.02--
1040380 371 277 1860.630.5
1067376 373 277 1780.330.5
1156380 373 291 1780.02--

DLA Class II Haplotype Frequencies

DLA2 #STR typesPolish Lowland Sheepdog (n=26)Polski Owczarek Nizinny (n=1)
2014339 322 2840.650.5
2017343 322 2800.330.5
2098343 323 2820.02--

Allele Frequencies

#Locus NameAllelePolish Lowland Sheepdog (n=26)Polski Owczarek Nizinny (n=1)
1AHT121 1000.480.5
1020.37--
1040.04--
1060.120.5
2AHT137 1310.290.5
1450.710.5
3AHTH130 1210.12--
1270.290.5
1310.560.5
1330.04--
4AHTh171-A 2190.10--
2330.08--
2370.791.0
2390.04--
5AHTh260 2400.10--
2440.06--
2460.691.0
2500.15--
6AHTk211 870.33--
910.631.0
950.04--
7AHTk253 2840.12--
2900.621.0
2920.27--
8C22.279 1160.27--
1180.19--
1240.541.0
9FH2001 1320.960.5
1440.040.5
10FH2054 1520.040.5
1560.33--
1600.02--
1640.04--
1680.520.5
1720.04--
1760.02--
11FH2848 2320.250.5
2360.48--
2400.02--
2420.250.5
12INRA21 950.06--
1010.941.0
13INU005 1240.710.5
1280.230.5
1320.06--
14INU030 1440.60--
1500.311.0
1520.10--
15INU055 2040.17--
2100.520.5
2180.310.5
16LEI004 950.881.0
970.12--
17REN105L03 2270.02--
2310.620.5
2330.350.5
2410.02--
18REN162C04 2040.19--
2060.751.0
2100.06--
19REN169D01 2120.25--
2160.67--
2200.081.0
20REN169O18 1640.460.5
1660.04--
1700.500.5
21REN247M23 2660.081.0
2680.85--
2720.08--
22REN54P11 2280.331.0
2320.25--
2360.17--
2380.25--
23REN64E19 1470.27--
1490.06--
1530.671.0
24VGL0760 150.69--
20.20.17--
21.20.131.0
25VGL0910 130.02--
140.190.5
150.17--
160.190.5
19.10.08--
20.10.08--
21.10.25--
22.10.02--
26VGL1063 140.100.5
150.19--
160.35--
170.06--
180.29--
190.020.5
27VGL1165 170.130.5
260.50--
270.02--
280.10--
300.230.5
310.02--
28VGL1828 190.310.5
200.27--
210.27--
220.04--
230.120.5
29VGL2009 100.15--
110.100.5
140.650.5
150.10--
30VGL2409 150.02--
170.711.0
180.10--
190.17--
31VGL2918 120.771.0
150.04--
17.30.19--
32VGL3008 150.290.5
160.06--
170.13--
180.290.5
190.23--
33VGL3235 130.12--
140.671.0
160.21--

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Polish Lowland SheepdogMean263.7272.3370.5280.508-0.038
 SE 0.2400.1690.0360.0300.027
  NNaNeHoHeF
Polski Owczarek NizinnyMean11.4851.4850.4850.242-0.485
 SE 0.0870.0870.0870.0430.087

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Polish Lowland SheepdogMean262.2861.6200.2910.3390.099
 SE 0.1710.1390.0610.0720.030
  NNaNeHoHeF
Polski Owczarek NizinnyMean11.7141.7140.7140.357-0.714
 SE 0.1710.1710.1710.0850.171

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT1212642.6350.7690.621-0.240
2AHT1372621.6960.5000.411-0.218
3AHTH1302642.4450.5380.5910.089
4AHTh171-A2641.5670.3850.362-0.063
5AHTh2602641.9400.3850.4840.206
6AHTk2112631.9570.5770.489-0.180
7AHTk2532632.1530.4230.5360.210
8C22.2792632.5040.6920.601-0.153
9FH20012621.0800.0770.074-0.040
10FH20542672.6200.6150.6180.005
11FH28482642.8050.6920.643-0.076
12INRA212621.1220.1150.109-0.061
13INU0052631.7770.2690.4370.384
14INU0302632.1770.4620.5410.146
15INU0552632.5370.6150.606-0.016
16LEI0042621.2570.2310.204-0.130
17REN105L032642.0030.3850.5010.232
18REN162C042631.6590.4620.397-0.162
19REN169D012631.9180.5000.479-0.045
20REN169O182632.1530.6540.536-0.221
21REN247M232631.3740.3080.272-0.130
22REN54P112643.8190.8850.738-0.198
23REN64E192631.8910.5000.471-0.061
24VGL07602631.8960.5000.473-0.058
25VGL09102685.5870.8850.821-0.077
26VGL10632663.9530.8460.747-0.133
27VGL11652663.0180.6540.6690.022
28VGL18282653.9300.9230.746-0.238
29VGL20092642.1290.5770.530-0.088
30VGL24092641.8320.3850.4540.153
31VGL29182631.5870.4620.370-0.248
32VGL30082654.1470.6920.7590.088
33VGL32352631.9570.4620.4890.056

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA2631.8700.3850.4650.173
2DLA I-4ACA2621.8270.3850.4530.150
3DLA I-4BCT2621.0390.0380.038-0.020
4DLA11312621.8650.4230.4640.088
55ACA2621.8270.3850.4530.150
65ACT2621.0390.0380.038-0.020
75BCA2631.8700.3850.4650.173