Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiba Inu (n=114)
1007380 372 281 1820.004
1054382 379 277 1840.360
1081395 379 289 1780.009
1091381 371 277 1810.228
1109381 379 291 1860.022
1133378 365 287 1720.009
1160386 369 289 1760.013
1191388 373 260 1860.224
1192376 373 281 1820.004
1193382 383 277 1840.004
1194385 369 291 1780.013
1195388 373 289 1810.018
1196390 372 291 1800.022
1197390 373 289 1860.009
1198392 371 277 1840.061

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiba Inu (n=114)
2001343 324 2840.009
2006339 325 2800.004
2015339 327 2800.061
2018339 324 2840.215
2032339 323 2800.009
2067343 322 2840.219
2083339 324 2820.009
2097343 327 2760.013
2098343 323 2820.013
2105341 325 2760.022
2106341 325 2860.368
2107343 322 2860.004
2108343 324 2940.018
2109345 322 2760.022
2110347 325 2680.009
2111351 324 2760.004

Allele Frequencies

#Locus NameAlleleShiba Inu (n=114)
1AHT121 900.004
920.061
960.004
1000.259
1020.259
1040.408
1060.004
2AHT137 1310.123
1330.206
1410.092
1450.136
1490.114
1510.118
1530.211
3AHTH130 1110.009
1190.009
1210.829
1250.009
1290.004
1310.013
1330.044
1350.083
4AHTh171-A 2190.825
2210.004
2250.018
2270.127
2290.009
2330.018
5AHTh260 2360.114
2420.035
2440.575
2460.145
2480.048
2520.083
6AHTk211 870.268
890.189
910.333
930.022
950.189
7AHTk253 2820.110
2860.132
2880.307
2900.303
2920.088
2940.061
8C22.279 1160.053
1180.048
1200.241
1220.009
1240.311
1260.127
1300.101
1320.110
9FH2001 1240.022
1320.105
1400.083
1440.329
1480.004
1520.162
1540.289
1560.004
10FH2054 1520.018
1560.105
1600.496
1640.171
1680.083
1720.083
1760.044
11FH2848 2300.022
2320.039
2340.004
2380.298
2420.636
12INRA21 950.136
970.789
990.022
1010.053
13INU005 1060.285
1240.439
1260.066
1300.114
1320.096
14INU030 1420.035
1440.421
1460.022
1480.039
1500.447
1520.035
15INU055 2100.368
2120.268
2140.136
2160.158
2200.057
2220.013
16LEI004 850.351
950.513
970.136
17REN105L03 2270.114
2290.101
2310.018
2330.018
2350.053
2370.610
2390.075
2410.013
18REN162C04 2020.096
2040.026
2060.452
2080.004
2100.346
2120.075
19REN169D01 2020.342
2100.075
2120.193
2160.259
2180.132
20REN169O18 1620.031
1640.456
1660.149
1680.241
1700.123
21REN247M23 2680.241
2700.539
2720.140
2760.009
2780.070
22REN54P11 2260.018
2280.175
2300.066
2320.079
2360.022
2380.167
2400.268
2420.206
23REN64E19 1390.004
1410.009
1450.149
1470.053
1490.351
1510.162
1530.105
1550.136
1570.031
24VGL0760 130.539
140.202
150.018
160.013
170.140
190.013
21.20.044
22.20.013
23.20.013
24.20.004
25VGL0910 16.10.228
17.10.013
18.10.215
19.10.496
20.10.031
21.10.018
26VGL1063 100.013
120.018
130.035
140.715
150.075
160.035
170.009
180.092
190.009
27VGL1165 150.009
180.022
210.075
260.070
270.096
280.154
300.101
310.461
320.013
28VGL1828 140.031
150.307
160.035
180.026
190.154
200.035
20.30.018
210.294
220.096
230.004
29VGL2009 90.035
110.009
120.123
130.583
140.140
150.105
160.004
30VGL2409 130.009
140.004
14.30.013
150.215
160.377
170.083
180.241
190.057
31VGL2918 120.039
130.145
140.250
150.048
160.009
17.30.022
18.30.075
19.30.342
20.30.004
21.30.009
22.30.057
32VGL3008 120.211
140.162
150.110
160.009
170.048
180.395
190.026
200.039
33VGL3235 120.259
130.268
140.118
150.031
160.004
170.215
180.070
190.035

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Shiba InuMean1146.9393.4520.6640.6670.004
 SE 0.3180.2080.0250.0240.008

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Shiba InuMean1147.1433.1340.6450.6700.035
 SE 0.6830.1940.0210.0250.015

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12111473.2880.6670.6960.042
2AHT13711476.4150.8330.8440.013
3AHTH13011481.4360.2810.3040.075
4AHTh171-A11461.4350.3250.303-0.070
5AHTh26011462.6700.5960.6250.046
6AHTk21111453.9320.7890.746-0.059
7AHTk25311464.4120.7890.773-0.021
8C22.27911485.0320.8250.801-0.029
9FH200111484.2220.7720.763-0.012
10FH205411473.3100.6670.6980.045
11FH284811452.0180.5090.505-0.008
12INRA2111441.5500.3680.355-0.038
13INU00511453.3300.7110.700-0.015
14INU03011462.6180.6670.618-0.079
15INU05511463.9350.7460.7460.000
16LEI00411432.4700.5790.5950.027
17REN105L0311482.4750.5880.5960.014
18REN162C0411462.9440.6490.6600.017
19REN169D0111454.0960.7890.756-0.044
20REN169O1811453.2840.6580.6950.054
21REN247M2311452.6740.5610.6260.103
22REN54P1111485.4350.7810.8160.043
23REN64E1911494.8770.8420.795-0.059
24VGL0760114102.8220.6230.6460.035
25VGL091011462.8960.6750.655-0.032
26VGL106311491.8930.4560.4720.033
27VGL116511493.7540.7540.734-0.028
28VGL1828114104.5890.7190.7820.080
29VGL200911472.5810.5700.6130.069
30VGL240911483.8890.7540.743-0.015
31VGL2918114114.6770.8250.786-0.049
32VGL300811484.1130.7540.7570.003
33VGL323511484.8570.7890.7940.006

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA114113.8690.6930.7420.065
2DLA I-4ACA11473.3070.6670.6980.044
3DLA I-4BCT11462.0710.5350.517-0.035
4DLA113111483.2540.7020.693-0.013
55ACA11463.1420.6580.6820.035
65ACT11453.4030.6670.7060.056
75BCA11472.8950.5960.6550.089