Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Oct 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=194)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.356
1081	395 379 289 178	0.005
1091	381 371 277 181	0.214
1109	381 379 291 186	0.026
1133	378 365 287 172	0.005
1160	386 369 289 176	0.010
1191	388 373 260 186	0.245
1192	376 373 281 182	0.021
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.021
1196	390 372 291 180	0.015
1197	390 373 289 186	0.015
1198	392 371 277 184	0.049
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=194)
2001	343 324 284	0.015
2006	339 325 280	0.003
2015	339 327 280	0.049
2016	339 323 284	0.003
2018	339 324 284	0.240
2032	339 323 280	0.005
2067	343 322 284	0.206
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.010
2105	341 325 276	0.015
2106	341 325 286	0.361
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.026
2110	347 325 268	0.005
2111	351 324 276	0.021
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=194)
1	AHT121	90	0.003
		92	0.067
		96	0.003
		100	0.260
		102	0.232
		104	0.433
		106	0.003
2	AHT137	131	0.116
		133	0.204
		135	0.003
		137	0.026
		141	0.088
		145	0.093
		149	0.131
		151	0.116
		153	0.224
3	AHTH130	111	0.010
		115	0.003
		119	0.005
		121	0.838
		125	0.015
		129	0.005
		131	0.008
		133	0.034
		135	0.082
4	AHTh171-A	219	0.825
		221	0.003
		225	0.013
		227	0.139
		229	0.008
		233	0.013
5	AHTh260	236	0.093
		242	0.036
		244	0.562
		246	0.170
		248	0.070
		252	0.070
6	AHTk211	87	0.258
		89	0.178
		91	0.366
		93	0.021
		95	0.178
7	AHTk253	282	0.137
		286	0.131
		288	0.278
		290	0.296
		292	0.108
		294	0.049
8	C22.279	116	0.046
		118	0.049
		120	0.219
		122	0.005
		124	0.330
		126	0.113
		130	0.113
		132	0.124
9	FH2001	124	0.036
		132	0.101
		140	0.070
		144	0.369
		148	0.008
		152	0.139
		154	0.276
		156	0.003
10	FH2054	152	0.013
		156	0.121
		160	0.459
		164	0.168
		168	0.124
		172	0.070
		176	0.046
11	FH2848	230	0.015
		232	0.034
		234	0.010
		238	0.340
		242	0.598
		246	0.003
12	INRA21	95	0.137
		97	0.789
		99	0.018
		101	0.057
13	INU005	106	0.281
		124	0.454
		126	0.057
		130	0.121
		132	0.088
14	INU030	142	0.031
		144	0.448
		146	0.021
		148	0.044
		150	0.425
		152	0.031
15	INU055	210	0.412
		212	0.273
		214	0.131
		216	0.131
		220	0.044
		222	0.008
16	LEI004	85	0.387
		95	0.477
		97	0.137
17	REN105L03	227	0.093
		229	0.129
		231	0.023
		233	0.015
		235	0.067
		237	0.601
		239	0.059
		241	0.013
18	REN162C04	202	0.080
		204	0.015
		206	0.459
		208	0.003
		210	0.356
		212	0.088
19	REN169D01	202	0.322
		210	0.077
		212	0.198
		216	0.284
		218	0.119
20	REN169O18	162	0.028
		164	0.479
		166	0.155
		168	0.219
		170	0.116
		172	0.003
21	REN247M23	268	0.237
		270	0.539
		272	0.124
		276	0.010
		278	0.090
22	REN54P11	226	0.010
		228	0.168
		230	0.077
		232	0.085
		236	0.015
		238	0.204
		240	0.240
		242	0.201
23	REN64E19	139	0.003
		141	0.008
		145	0.162
		147	0.057
		149	0.363
		151	0.144
		153	0.101
		155	0.134
		157	0.028
24	VGL0760	13	0.570
		14	0.180
		15	0.021
		16	0.028
		17	0.111
		19	0.008
		21.2	0.054
		22.2	0.013
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.005
		16.1	0.273
		17.1	0.008
		18.1	0.180
		19.1	0.456
		20.1	0.059
		21.1	0.010
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.039
		14	0.729
		15	0.088
		16	0.026
		17	0.008
		18	0.082
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.021
		21	0.072
		26	0.064
		27	0.098
		28	0.126
		30	0.129
		31	0.469
		32	0.010
28	VGL1828	14	0.028
		15	0.289
		16	0.054
		18	0.026
		19	0.149
		20	0.028
		20.3	0.026
		21	0.299
		22	0.098
		23	0.003
29	VGL2009	9	0.034
		11	0.005
		12	0.137
		13	0.595
		14	0.147
		15	0.080
		16	0.003
30	VGL2409	13	0.008
		13.3	0.036
		14	0.005
		14.3	0.015
		15	0.193
		16	0.358
		17	0.095
		18	0.232
		19	0.057
31	VGL2918	12	0.059
		13	0.147
		14	0.196
		15	0.028
		16	0.008
		17.3	0.021
		18.3	0.067
		19.3	0.369
		20.3	0.008
		21.3	0.015
		22.3	0.082
32	VGL3008	12	0.196
		14	0.211
		15	0.085
		16	0.018
		17	0.054
		18	0.379
		19	0.023
		20	0.034
33	VGL3235	12	0.245
		13	0.291
		14	0.098
		15	0.028
		16	0.013
		17	0.206
		18	0.082
		19	0.036

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	194	7.242	3.458	0.663	0.666	0.006
	SE		0.335	0.211	0.025	0.025	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	194	7.286	3.127	0.661	0.672	0.015
	SE		0.720	0.177	0.018	0.022	0.014

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	194	7	3.189	0.680	0.686	0.009
2	AHT137	194	9	6.541	0.820	0.847	0.033
3	AHTH130	194	9	1.408	0.263	0.290	0.093
4	AHTh171-A	194	6	1.429	0.309	0.300	-0.031
5	AHTh260	194	6	2.746	0.619	0.636	0.027
6	AHTk211	194	5	3.787	0.747	0.736	-0.016
7	AHTk253	194	6	4.643	0.763	0.785	0.028
8	C22.279	194	8	4.940	0.804	0.798	-0.008
9	FH2001	194	8	4.039	0.778	0.752	-0.034
10	FH2054	194	7	3.628	0.680	0.724	0.061
11	FH2848	194	6	2.106	0.500	0.525	0.048
12	INRA21	194	4	1.552	0.356	0.356	0.000
13	INU005	194	5	3.223	0.701	0.690	-0.016
14	INU030	194	6	2.589	0.639	0.614	-0.041
15	INU055	194	6	3.556	0.716	0.719	0.003
16	LEI004	194	3	2.529	0.598	0.605	0.011
17	REN105L03	194	8	2.533	0.608	0.605	-0.005
18	REN162C04	194	6	2.847	0.670	0.649	-0.033
19	REN169D01	194	5	4.105	0.789	0.756	-0.043
20	REN169O18	194	6	3.165	0.655	0.684	0.043
21	REN247M23	194	5	2.703	0.577	0.630	0.084
22	REN54P11	194	8	5.527	0.799	0.819	0.025
23	REN64E19	194	9	4.730	0.830	0.789	-0.052
24	VGL0760	194	10	2.675	0.619	0.626	0.012
25	VGL0910	194	8	3.134	0.670	0.681	0.016
26	VGL1063	194	10	1.822	0.438	0.451	0.029
27	VGL1165	194	10	3.675	0.758	0.728	-0.041
28	VGL1828	194	10	4.750	0.768	0.789	0.027
29	VGL2009	194	7	2.486	0.593	0.598	0.008
30	VGL2409	194	9	4.284	0.747	0.767	0.025
31	VGL2918	194	11	4.713	0.830	0.788	-0.053
32	VGL3008	194	8	4.189	0.768	0.761	-0.009
33	VGL3235	194	8	4.856	0.794	0.794	0.000

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	194	11	3.815	0.701	0.738	0.050
2	DLA I-4ACA	194	7	3.207	0.670	0.688	0.026
3	DLA I-4BCT	194	6	2.200	0.572	0.545	-0.049
4	DLA1131	194	9	3.276	0.706	0.695	-0.016
5	5ACA	194	6	3.255	0.696	0.693	-0.005
6	5ACT	194	5	3.340	0.675	0.701	0.036
7	5BCA	194	7	2.793	0.603	0.642	0.061

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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