Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jul 26, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=171)
1007	380 372 281 182	0.003
1054	382 379 277 184	0.354
1081	395 379 289 178	0.006
1091	381 371 277 181	0.225
1109	381 379 291 186	0.029
1133	378 365 287 172	0.006
1160	386 369 289 176	0.012
1191	388 373 260 186	0.231
1192	376 373 281 182	0.018
1193	382 383 277 184	0.003
1194	385 369 291 178	0.009
1195	388 373 289 181	0.020
1196	390 372 291 180	0.018
1197	390 373 289 186	0.015
1198	392 371 277 184	0.050
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=171)
2001	343 324 284	0.015
2006	339 325 280	0.003
2015	339 327 280	0.050
2018	339 324 284	0.225
2032	339 323 280	0.006
2067	343 322 284	0.216
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.009
2098	343 323 282	0.012
2105	341 325 276	0.018
2106	341 325 286	0.360
2107	343 322 286	0.003
2108	343 324 294	0.020
2109	345 322 276	0.029
2110	347 325 268	0.006
2111	351 324 276	0.018
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=171)
1	AHT121	90	0.003
		92	0.067
		96	0.003
		100	0.257
		102	0.240
		104	0.427
		106	0.003
2	AHT137	131	0.120
		133	0.199
		135	0.003
		137	0.020
		141	0.094
		145	0.099
		149	0.132
		151	0.105
		153	0.228
3	AHTH130	111	0.012
		115	0.003
		119	0.006
		121	0.830
		125	0.012
		129	0.003
		131	0.009
		133	0.038
		135	0.088
4	AHTh171-A	219	0.827
		221	0.003
		225	0.012
		227	0.135
		229	0.009
		233	0.015
5	AHTh260	236	0.102
		242	0.032
		244	0.558
		246	0.167
		248	0.064
		252	0.076
6	AHTk211	87	0.257
		89	0.184
		91	0.351
		93	0.020
		95	0.187
7	AHTk253	282	0.132
		286	0.126
		288	0.292
		290	0.295
		292	0.105
		294	0.050
8	C22.279	116	0.050
		118	0.038
		120	0.219
		122	0.006
		124	0.336
		126	0.117
		130	0.117
		132	0.117
9	FH2001	124	0.023
		132	0.099
		140	0.076
		144	0.357
		148	0.006
		152	0.143
		154	0.292
		156	0.003
10	FH2054	152	0.015
		156	0.114
		160	0.465
		164	0.167
		168	0.114
		172	0.079
		176	0.047
11	FH2848	230	0.018
		232	0.032
		234	0.009
		238	0.325
		242	0.614
		246	0.003
12	INRA21	95	0.132
		97	0.787
		99	0.020
		101	0.061
13	INU005	106	0.292
		124	0.442
		126	0.061
		130	0.117
		132	0.088
14	INU030	142	0.035
		144	0.436
		146	0.023
		148	0.041
		150	0.436
		152	0.029
15	INU055	210	0.389
		212	0.281
		214	0.140
		216	0.132
		220	0.050
		222	0.009
16	LEI004	85	0.363
		95	0.500
		97	0.137
17	REN105L03	227	0.091
		229	0.123
		231	0.026
		233	0.015
		235	0.067
		237	0.596
		239	0.067
		241	0.015
18	REN162C04	202	0.085
		204	0.018
		206	0.462
		208	0.003
		210	0.354
		212	0.079
19	REN169D01	202	0.327
		210	0.076
		212	0.190
		216	0.278
		218	0.129
20	REN169O18	162	0.032
		164	0.468
		166	0.167
		168	0.205
		170	0.126
		172	0.003
21	REN247M23	268	0.246
		270	0.535
		272	0.129
		276	0.009
		278	0.082
22	REN54P11	226	0.012
		228	0.161
		230	0.079
		232	0.082
		236	0.018
		238	0.202
		240	0.243
		242	0.205
23	REN64E19	139	0.003
		141	0.006
		145	0.155
		147	0.050
		149	0.360
		151	0.155
		153	0.105
		155	0.135
		157	0.032
24	VGL0760	13	0.567
		14	0.178
		15	0.020
		16	0.026
		17	0.123
		19	0.009
		21.2	0.056
		22.2	0.009
		23.2	0.009
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.266
		17.1	0.009
		18.1	0.196
		19.1	0.456
		20.1	0.053
		21.1	0.012
		22.1	0.006
26	VGL1063	10	0.009
		12	0.015
		13	0.029
		14	0.725
		15	0.091
		16	0.029
		17	0.009
		18	0.085
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.020
		21	0.079
		26	0.067
		27	0.102
		28	0.135
		30	0.126
		31	0.450
		32	0.012
28	VGL1828	14	0.032
		15	0.287
		16	0.050
		18	0.026
		19	0.155
		20	0.029
		20.3	0.023
		21	0.307
		22	0.088
		23	0.003
29	VGL2009	9	0.035
		11	0.006
		12	0.129
		13	0.588
		14	0.149
		15	0.091
		16	0.003
30	VGL2409	13	0.009
		13.3	0.020
		14	0.003
		14.3	0.015
		15	0.199
		16	0.363
		17	0.094
		18	0.240
		19	0.058
31	VGL2918	12	0.053
		13	0.155
		14	0.213
		15	0.032
		16	0.006
		17.3	0.023
		18.3	0.070
		19.3	0.354
		20.3	0.009
		21.3	0.015
		22.3	0.070
32	VGL3008	12	0.199
		14	0.184
		15	0.091
		16	0.015
		17	0.053
		18	0.401
		19	0.020
		20	0.038
33	VGL3235	12	0.243
		13	0.287
		14	0.105
		15	0.032
		16	0.009
		17	0.211
		18	0.073
		19	0.041

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	171	7.242	3.465	0.664	0.667	0.008
	SE		0.335	0.209	0.026	0.024	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	171	7.143	3.142	0.658	0.673	0.019
	SE		0.683	0.181	0.019	0.023	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	171	7	3.221	0.667	0.690	0.033
2	AHT137	171	9	6.520	0.830	0.847	0.019
3	AHTH130	171	9	1.430	0.269	0.301	0.106
4	AHTh171-A	171	6	1.422	0.304	0.297	-0.025
5	AHTh260	171	6	2.769	0.620	0.639	0.030
6	AHTk211	171	5	3.866	0.760	0.741	-0.026
7	AHTk253	171	6	4.558	0.766	0.781	0.019
8	C22.279	171	8	4.851	0.795	0.794	-0.002
9	FH2001	171	8	4.008	0.766	0.750	-0.021
10	FH2054	171	7	3.590	0.673	0.721	0.068
11	FH2848	171	6	2.067	0.497	0.516	0.037
12	INRA21	171	4	1.562	0.351	0.360	0.025
13	INU005	171	5	3.272	0.719	0.694	-0.036
14	INU030	171	6	2.605	0.649	0.616	-0.054
15	INU055	171	6	3.709	0.737	0.730	-0.009
16	LEI004	171	3	2.498	0.596	0.600	0.005
17	REN105L03	171	8	2.569	0.596	0.611	0.023
18	REN162C04	171	6	2.838	0.655	0.648	-0.011
19	REN169D01	171	5	4.118	0.795	0.757	-0.050
20	REN169O18	171	6	3.274	0.667	0.695	0.040
21	REN247M23	171	5	2.703	0.567	0.630	0.100
22	REN54P11	171	8	5.533	0.789	0.819	0.036
23	REN64E19	171	9	4.760	0.830	0.790	-0.051
24	VGL0760	171	10	2.680	0.626	0.627	0.002
25	VGL0910	171	8	3.122	0.678	0.680	0.002
26	VGL1063	171	10	1.840	0.450	0.457	0.014
27	VGL1165	171	10	3.869	0.778	0.742	-0.049
28	VGL1828	171	10	4.680	0.760	0.786	0.033
29	VGL2009	171	7	2.540	0.591	0.606	0.026
30	VGL2409	171	9	4.143	0.731	0.759	0.036
31	VGL2918	171	11	4.778	0.842	0.791	-0.065
32	VGL3008	171	8	4.049	0.766	0.753	-0.017
33	VGL3235	171	8	4.889	0.784	0.795	0.015

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	171	11	3.826	0.696	0.739	0.058
2	DLA I-4ACA	171	7	3.245	0.684	0.692	0.011
3	DLA I-4BCT	171	6	2.163	0.567	0.538	-0.055
4	DLA1131	171	8	3.292	0.702	0.696	-0.008
5	5ACA	171	6	3.267	0.684	0.694	0.014
6	5ACT	171	5	3.357	0.678	0.702	0.034
7	5BCA	171	7	2.847	0.596	0.649	0.080

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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