Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jul 6, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=189)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.357
1081	395 379 289 178	0.005
1091	381 371 277 181	0.217
1109	381 379 291 186	0.026
1133	378 365 287 172	0.005
1160	386 369 289 176	0.011
1191	388 373 260 186	0.238
1192	376 373 281 182	0.019
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.021
1196	390 372 291 180	0.016
1197	390 373 289 186	0.016
1198	392 371 277 184	0.050
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=189)
2001	343 324 284	0.016
2006	339 325 280	0.003
2015	339 327 280	0.050
2016	339 323 284	0.003
2018	339 324 284	0.233
2032	339 323 280	0.005
2067	343 322 284	0.209
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.016
2106	341 325 286	0.362
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.026
2110	347 325 268	0.005
2111	351 324 276	0.019
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=189)
1	AHT121	90	0.003
		92	0.069
		96	0.003
		100	0.257
		102	0.235
		104	0.431
		106	0.003
2	AHT137	131	0.114
		133	0.206
		135	0.003
		137	0.024
		141	0.087
		145	0.093
		149	0.127
		151	0.116
		153	0.230
3	AHTH130	111	0.011
		115	0.003
		119	0.005
		121	0.836
		125	0.016
		129	0.003
		131	0.008
		133	0.034
		135	0.085
4	AHTh171-A	219	0.825
		221	0.003
		225	0.013
		227	0.138
		229	0.008
		233	0.013
5	AHTh260	236	0.095
		242	0.037
		244	0.561
		246	0.175
		248	0.061
		252	0.071
6	AHTk211	87	0.251
		89	0.180
		91	0.370
		93	0.021
		95	0.177
7	AHTk253	282	0.140
		286	0.132
		288	0.278
		290	0.291
		292	0.111
		294	0.048
8	C22.279	116	0.048
		118	0.050
		120	0.222
		122	0.005
		124	0.331
		126	0.106
		130	0.114
		132	0.124
9	FH2001	124	0.037
		132	0.101
		140	0.071
		144	0.365
		148	0.005
		152	0.138
		154	0.280
		156	0.003
10	FH2054	152	0.013
		156	0.119
		160	0.458
		164	0.169
		168	0.124
		172	0.071
		176	0.045
11	FH2848	230	0.016
		232	0.034
		234	0.008
		238	0.333
		242	0.606
		246	0.003
12	INRA21	95	0.135
		97	0.788
		99	0.019
		101	0.058
13	INU005	106	0.283
		124	0.450
		126	0.058
		130	0.122
		132	0.087
14	INU030	142	0.032
		144	0.444
		146	0.021
		148	0.045
		150	0.429
		152	0.029
15	INU055	210	0.407
		212	0.270
		214	0.135
		216	0.135
		220	0.045
		222	0.008
16	LEI004	85	0.386
		95	0.474
		97	0.140
17	REN105L03	227	0.093
		229	0.130
		231	0.024
		233	0.016
		235	0.063
		237	0.601
		239	0.061
		241	0.013
18	REN162C04	202	0.079
		204	0.016
		206	0.460
		208	0.003
		210	0.357
		212	0.085
19	REN169D01	202	0.323
		210	0.074
		212	0.201
		216	0.283
		218	0.119
20	REN169O18	162	0.029
		164	0.481
		166	0.156
		168	0.212
		170	0.119
		172	0.003
21	REN247M23	268	0.241
		270	0.537
		272	0.124
		276	0.011
		278	0.087
22	REN54P11	226	0.011
		228	0.164
		230	0.079
		232	0.087
		236	0.016
		238	0.204
		240	0.241
		242	0.198
23	REN64E19	139	0.003
		141	0.008
		145	0.164
		147	0.058
		149	0.357
		151	0.148
		153	0.101
		155	0.132
		157	0.029
24	VGL0760	13	0.574
		14	0.183
		15	0.021
		16	0.026
		17	0.111
		19	0.008
		21.2	0.050
		22.2	0.011
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.270
		17.1	0.008
		18.1	0.185
		19.1	0.458
		20.1	0.058
		21.1	0.011
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.040
		14	0.722
		15	0.090
		16	0.026
		17	0.008
		18	0.085
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.021
		21	0.074
		26	0.066
		27	0.098
		28	0.124
		30	0.130
		31	0.466
		32	0.011
28	VGL1828	14	0.029
		15	0.294
		16	0.050
		18	0.026
		19	0.146
		20	0.029
		20.3	0.026
		21	0.299
		22	0.098
		23	0.003
29	VGL2009	9	0.034
		11	0.005
		12	0.135
		13	0.590
		14	0.151
		15	0.082
		16	0.003
30	VGL2409	13	0.008
		13.3	0.032
		14	0.005
		14.3	0.013
		15	0.193
		16	0.368
		17	0.090
		18	0.233
		19	0.058
31	VGL2918	12	0.061
		13	0.151
		14	0.198
		15	0.029
		16	0.008
		17.3	0.021
		18.3	0.069
		19.3	0.360
		20.3	0.008
		21.3	0.013
		22.3	0.082
32	VGL3008	12	0.198
		14	0.212
		15	0.085
		16	0.013
		17	0.056
		18	0.378
		19	0.024
		20	0.034
33	VGL3235	12	0.249
		13	0.294
		14	0.098
		15	0.029
		16	0.011
		17	0.206
		18	0.077
		19	0.037

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	189	7.242	3.459	0.663	0.666	0.007
	SE		0.335	0.210	0.025	0.024	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	189	7.286	3.126	0.659	0.671	0.016
	SE		0.720	0.179	0.018	0.022	0.015

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	189	7	3.205	0.677	0.688	0.016
2	AHT137	189	9	6.454	0.815	0.845	0.036
3	AHTH130	189	9	1.413	0.265	0.292	0.095
4	AHTh171-A	189	6	1.427	0.307	0.299	-0.025
5	AHTh260	189	6	2.745	0.635	0.636	0.001
6	AHTk211	189	5	3.780	0.746	0.735	-0.014
7	AHTk253	189	6	4.681	0.772	0.786	0.018
8	C22.279	189	8	4.922	0.799	0.797	-0.003
9	FH2001	189	8	4.041	0.778	0.753	-0.034
10	FH2054	189	7	3.636	0.683	0.725	0.058
11	FH2848	189	6	2.085	0.497	0.520	0.044
12	INRA21	189	4	1.554	0.354	0.357	0.006
13	INU005	189	5	3.245	0.704	0.692	-0.017
14	INU030	189	6	2.594	0.635	0.614	-0.033
15	INU055	189	6	3.606	0.714	0.723	0.012
16	LEI004	189	3	2.544	0.593	0.607	0.024
17	REN105L03	189	8	2.533	0.603	0.605	0.003
18	REN162C04	189	6	2.832	0.667	0.647	-0.031
19	REN169D01	189	5	4.092	0.788	0.756	-0.043
20	REN169O18	189	6	3.165	0.656	0.684	0.041
21	REN247M23	189	5	2.706	0.571	0.630	0.094
22	REN54P11	189	8	5.555	0.794	0.820	0.032
23	REN64E19	189	9	4.801	0.841	0.792	-0.063
24	VGL0760	189	10	2.637	0.614	0.621	0.011
25	VGL0910	189	8	3.123	0.677	0.680	0.004
26	VGL1063	189	10	1.854	0.450	0.461	0.023
27	VGL1165	189	10	3.716	0.757	0.731	-0.035
28	VGL1828	189	10	4.718	0.762	0.788	0.033
29	VGL2009	189	7	2.519	0.598	0.603	0.009
30	VGL2409	189	9	4.176	0.741	0.761	0.026
31	VGL2918	189	11	4.801	0.836	0.792	-0.056
32	VGL3008	189	8	4.176	0.767	0.761	-0.009
33	VGL3235	189	8	4.797	0.794	0.792	-0.003

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	189	11	3.818	0.698	0.738	0.054
2	DLA I-4ACA	189	7	3.214	0.672	0.689	0.024
3	DLA I-4BCT	189	6	2.179	0.571	0.541	-0.056
4	DLA1131	189	9	3.268	0.704	0.694	-0.014
5	5ACA	189	6	3.247	0.693	0.692	-0.002
6	5ACT	189	5	3.351	0.677	0.702	0.035
7	5BCA	189	7	2.808	0.598	0.644	0.071

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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