Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Sep 17, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=192)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.357
1081	395 379 289 178	0.005
1091	381 371 277 181	0.214
1109	381 379 291 186	0.026
1133	378 365 287 172	0.005
1160	386 369 289 176	0.010
1191	388 373 260 186	0.245
1192	376 373 281 182	0.018
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.021
1196	390 372 291 180	0.016
1197	390 373 289 186	0.016
1198	392 371 277 184	0.049
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=192)
2001	343 324 284	0.016
2006	339 325 280	0.003
2015	339 327 280	0.049
2016	339 323 284	0.003
2018	339 324 284	0.240
2032	339 323 280	0.005
2067	343 322 284	0.206
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.010
2105	341 325 276	0.016
2106	341 325 286	0.362
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.026
2110	347 325 268	0.005
2111	351 324 276	0.018
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=192)
1	AHT121	90	0.003
		92	0.068
		96	0.003
		100	0.258
		102	0.234
		104	0.432
		106	0.003
2	AHT137	131	0.112
		133	0.206
		135	0.003
		137	0.023
		141	0.089
		145	0.094
		149	0.130
		151	0.117
		153	0.227
3	AHTH130	111	0.010
		115	0.003
		119	0.005
		121	0.836
		125	0.016
		129	0.005
		131	0.008
		133	0.034
		135	0.083
4	AHTh171-A	219	0.826
		221	0.003
		225	0.013
		227	0.138
		229	0.008
		233	0.013
5	AHTh260	236	0.094
		242	0.036
		244	0.568
		246	0.172
		248	0.060
		252	0.070
6	AHTk211	87	0.258
		89	0.180
		91	0.367
		93	0.021
		95	0.174
7	AHTk253	282	0.138
		286	0.130
		288	0.281
		290	0.292
		292	0.109
		294	0.049
8	C22.279	116	0.047
		118	0.049
		120	0.221
		122	0.005
		124	0.328
		126	0.109
		130	0.115
		132	0.125
9	FH2001	124	0.036
		132	0.102
		140	0.070
		144	0.365
		148	0.008
		152	0.138
		154	0.279
		156	0.003
10	FH2054	152	0.013
		156	0.122
		160	0.458
		164	0.169
		168	0.122
		172	0.070
		176	0.044
11	FH2848	230	0.016
		232	0.034
		234	0.010
		238	0.336
		242	0.602
		246	0.003
12	INRA21	95	0.135
		97	0.789
		99	0.018
		101	0.057
13	INU005	106	0.281
		124	0.456
		126	0.057
		130	0.120
		132	0.086
14	INU030	142	0.031
		144	0.445
		146	0.021
		148	0.044
		150	0.430
		152	0.029
15	INU055	210	0.411
		212	0.271
		214	0.133
		216	0.133
		220	0.044
		222	0.008
16	LEI004	85	0.385
		95	0.477
		97	0.138
17	REN105L03	227	0.094
		229	0.130
		231	0.023
		233	0.016
		235	0.063
		237	0.602
		239	0.060
		241	0.013
18	REN162C04	202	0.078
		204	0.016
		206	0.456
		208	0.003
		210	0.359
		212	0.089
19	REN169D01	202	0.320
		210	0.078
		212	0.198
		216	0.286
		218	0.117
20	REN169O18	162	0.029
		164	0.482
		166	0.154
		168	0.216
		170	0.117
		172	0.003
21	REN247M23	268	0.240
		270	0.536
		272	0.125
		276	0.010
		278	0.089
22	REN54P11	226	0.010
		228	0.169
		230	0.078
		232	0.086
		236	0.016
		238	0.201
		240	0.242
		242	0.198
23	REN64E19	139	0.003
		141	0.008
		145	0.164
		147	0.057
		149	0.359
		151	0.146
		153	0.099
		155	0.135
		157	0.029
24	VGL0760	13	0.573
		14	0.182
		15	0.021
		16	0.029
		17	0.112
		19	0.008
		21.2	0.049
		22.2	0.010
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.005
		16.1	0.276
		17.1	0.008
		18.1	0.182
		19.1	0.451
		20.1	0.060
		21.1	0.010
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.039
		14	0.727
		15	0.089
		16	0.026
		17	0.008
		18	0.083
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.021
		21	0.073
		26	0.065
		27	0.099
		28	0.122
		30	0.130
		31	0.469
		32	0.010
28	VGL1828	14	0.029
		15	0.292
		16	0.049
		18	0.026
		19	0.151
		20	0.029
		20.3	0.026
		21	0.297
		22	0.099
		23	0.003
29	VGL2009	9	0.034
		11	0.005
		12	0.138
		13	0.591
		14	0.148
		15	0.081
		16	0.003
30	VGL2409	13	0.008
		13.3	0.031
		14	0.005
		14.3	0.016
		15	0.195
		16	0.362
		17	0.094
		18	0.232
		19	0.057
31	VGL2918	12	0.060
		13	0.148
		14	0.198
		15	0.029
		16	0.008
		17.3	0.021
		18.3	0.068
		19.3	0.362
		20.3	0.008
		21.3	0.016
		22.3	0.083
32	VGL3008	12	0.195
		14	0.211
		15	0.086
		16	0.018
		17	0.055
		18	0.378
		19	0.023
		20	0.034
33	VGL3235	12	0.247
		13	0.294
		14	0.099
		15	0.029
		16	0.013
		17	0.206
		18	0.076
		19	0.036

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	192	7.242	3.458	0.663	0.666	0.006
	SE		0.335	0.211	0.025	0.025	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	192	7.286	3.119	0.659	0.671	0.015
	SE		0.720	0.177	0.018	0.022	0.015

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	192	7	3.196	0.677	0.687	0.015
2	AHT137	192	9	6.491	0.818	0.846	0.033
3	AHTH130	192	9	1.414	0.266	0.293	0.092
4	AHTh171-A	192	6	1.427	0.307	0.299	-0.028
5	AHTh260	192	6	2.699	0.625	0.630	0.007
6	AHTk211	192	5	3.781	0.745	0.736	-0.013
7	AHTk253	192	6	4.660	0.766	0.785	0.025
8	C22.279	192	8	4.949	0.802	0.798	-0.005
9	FH2001	192	8	4.061	0.781	0.754	-0.037
10	FH2054	192	7	3.626	0.677	0.724	0.065
11	FH2848	192	6	2.100	0.500	0.524	0.045
12	INRA21	192	4	1.551	0.354	0.355	0.004
13	INU005	192	5	3.207	0.698	0.688	-0.014
14	INU030	192	6	2.583	0.641	0.613	-0.045
15	INU055	192	6	3.572	0.714	0.720	0.009
16	LEI004	192	3	2.534	0.594	0.605	0.019
17	REN105L03	192	8	2.525	0.604	0.604	-0.000
18	REN162C04	192	6	2.849	0.672	0.649	-0.035
19	REN169D01	192	5	4.104	0.786	0.756	-0.040
20	REN169O18	192	6	3.155	0.651	0.683	0.047
21	REN247M23	192	5	2.712	0.578	0.631	0.084
22	REN54P11	192	8	5.539	0.797	0.819	0.028
23	REN64E19	192	9	4.770	0.833	0.790	-0.054
24	VGL0760	192	10	2.645	0.615	0.622	0.012
25	VGL0910	192	8	3.162	0.677	0.684	0.010
26	VGL1063	192	10	1.834	0.443	0.455	0.027
27	VGL1165	192	10	3.682	0.755	0.728	-0.037
28	VGL1828	192	10	4.733	0.766	0.789	0.029
29	VGL2009	192	7	2.511	0.599	0.602	0.005
30	VGL2409	192	9	4.232	0.745	0.764	0.025
31	VGL2918	192	11	4.785	0.839	0.791	-0.060
32	VGL3008	192	8	4.208	0.771	0.762	-0.011
33	VGL3235	192	8	4.809	0.797	0.792	-0.006

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	192	11	3.802	0.698	0.737	0.053
2	DLA I-4ACA	192	7	3.208	0.672	0.688	0.024
3	DLA I-4BCT	192	6	2.192	0.573	0.544	-0.054
4	DLA1131	192	9	3.261	0.703	0.693	-0.014
5	5ACA	192	6	3.240	0.693	0.691	-0.002
6	5ACT	192	5	3.342	0.677	0.701	0.034
7	5BCA	192	7	2.790	0.599	0.642	0.066

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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