Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Nov 21, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=195)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.354
1081	395 379 289 178	0.005
1091	381 371 277 181	0.215
1109	381 379 291 186	0.026
1133	378 365 287 172	0.005
1160	386 369 289 176	0.010
1191	388 373 260 186	0.244
1192	376 373 281 182	0.021
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.021
1196	390 372 291 180	0.015
1197	390 373 289 186	0.015
1198	392 371 277 184	0.051
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=195)
2001	343 324 284	0.015
2006	339 325 280	0.003
2015	339 327 280	0.051
2016	339 323 284	0.003
2018	339 324 284	0.238
2032	339 323 280	0.005
2067	343 322 284	0.208
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.010
2105	341 325 276	0.015
2106	341 325 286	0.359
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.026
2110	347 325 268	0.005
2111	351 324 276	0.021
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=195)
1	AHT121	90	0.003
		92	0.067
		96	0.003
		100	0.262
		102	0.231
		104	0.433
		106	0.003
2	AHT137	131	0.115
		133	0.203
		135	0.003
		137	0.026
		141	0.090
		145	0.092
		149	0.133
		151	0.115
		153	0.223
3	AHTH130	111	0.010
		115	0.003
		119	0.005
		121	0.836
		125	0.018
		129	0.005
		131	0.008
		133	0.033
		135	0.082
4	AHTh171-A	219	0.826
		221	0.003
		225	0.013
		227	0.138
		229	0.008
		233	0.013
5	AHTh260	236	0.092
		242	0.036
		244	0.559
		246	0.172
		248	0.069
		252	0.072
6	AHTk211	87	0.256
		89	0.182
		91	0.364
		93	0.021
		95	0.177
7	AHTk253	282	0.136
		286	0.131
		288	0.279
		290	0.295
		292	0.110
		294	0.049
8	C22.279	116	0.046
		118	0.049
		120	0.218
		122	0.005
		124	0.331
		126	0.115
		130	0.113
		132	0.123
9	FH2001	124	0.036
		132	0.103
		140	0.069
		144	0.369
		148	0.008
		152	0.138
		154	0.274
		156	0.003
10	FH2054	152	0.013
		156	0.123
		160	0.459
		164	0.167
		168	0.123
		172	0.069
		176	0.046
11	FH2848	230	0.015
		232	0.033
		234	0.010
		238	0.344
		242	0.595
		246	0.003
12	INRA21	95	0.136
		97	0.790
		99	0.018
		101	0.056
13	INU005	106	0.282
		124	0.454
		126	0.056
		130	0.121
		132	0.087
14	INU030	142	0.031
		144	0.446
		146	0.021
		148	0.044
		150	0.428
		152	0.031
15	INU055	210	0.413
		212	0.274
		214	0.131
		216	0.131
		220	0.044
		222	0.008
16	LEI004	85	0.385
		95	0.477
		97	0.138
17	REN105L03	227	0.092
		229	0.128
		231	0.023
		233	0.015
		235	0.067
		237	0.603
		239	0.059
		241	0.013
18	REN162C04	202	0.079
		204	0.015
		206	0.459
		208	0.003
		210	0.356
		212	0.087
19	REN169D01	202	0.323
		210	0.077
		212	0.197
		216	0.285
		218	0.118
20	REN169O18	162	0.028
		164	0.477
		166	0.156
		168	0.218
		170	0.118
		172	0.003
21	REN247M23	268	0.236
		270	0.538
		272	0.126
		276	0.010
		278	0.090
22	REN54P11	226	0.010
		228	0.167
		230	0.077
		232	0.085
		236	0.015
		238	0.205
		240	0.238
		242	0.203
23	REN64E19	139	0.003
		141	0.008
		145	0.162
		147	0.056
		149	0.362
		151	0.144
		153	0.103
		155	0.136
		157	0.028
24	VGL0760	13	0.569
		14	0.179
		15	0.021
		16	0.031
		17	0.110
		19	0.008
		21.2	0.054
		22.2	0.013
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.005
		16.1	0.274
		17.1	0.008
		18.1	0.179
		19.1	0.454
		20.1	0.062
		21.1	0.010
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.038
		14	0.731
		15	0.087
		16	0.026
		17	0.008
		18	0.082
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.021
		21	0.072
		26	0.064
		27	0.100
		28	0.126
		30	0.128
		31	0.469
		32	0.010
28	VGL1828	14	0.028
		15	0.290
		16	0.054
		18	0.026
		19	0.151
		20	0.028
		20.3	0.026
		21	0.297
		22	0.097
		23	0.003
29	VGL2009	9	0.033
		11	0.005
		12	0.138
		13	0.595
		14	0.146
		15	0.079
		16	0.003
30	VGL2409	13	0.008
		13.3	0.036
		14	0.005
		14.3	0.015
		15	0.192
		16	0.356
		17	0.095
		18	0.233
		19	0.059
31	VGL2918	12	0.059
		13	0.149
		14	0.195
		15	0.028
		16	0.008
		17.3	0.021
		18.3	0.067
		19.3	0.367
		20.3	0.008
		21.3	0.015
		22.3	0.085
32	VGL3008	12	0.197
		14	0.213
		15	0.085
		16	0.018
		17	0.054
		18	0.377
		19	0.023
		20	0.033
33	VGL3235	12	0.244
		13	0.292
		14	0.100
		15	0.028
		16	0.013
		17	0.205
		18	0.082
		19	0.036

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	195	7.242	3.461	0.664	0.666	0.005
	SE		0.335	0.212	0.026	0.025	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	195	7.286	3.132	0.661	0.672	0.015
	SE		0.720	0.179	0.019	0.022	0.014

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	195	7	3.186	0.682	0.686	0.006
2	AHT137	195	9	6.560	0.821	0.848	0.032
3	AHTH130	195	9	1.414	0.267	0.293	0.090
4	AHTh171-A	195	6	1.426	0.308	0.299	-0.030
5	AHTh260	195	6	2.765	0.621	0.638	0.028
6	AHTk211	195	5	3.800	0.744	0.737	-0.009
7	AHTk253	195	6	4.648	0.764	0.785	0.026
8	C22.279	195	8	4.935	0.805	0.797	-0.010
9	FH2001	195	8	4.041	0.779	0.753	-0.036
10	FH2054	195	7	3.626	0.682	0.724	0.058
11	FH2848	195	6	2.112	0.497	0.527	0.055
12	INRA21	195	4	1.549	0.354	0.354	0.001
13	INU005	195	5	3.217	0.703	0.689	-0.019
14	INU030	195	6	2.586	0.636	0.613	-0.037
15	INU055	195	6	3.548	0.718	0.718	0.000
16	LEI004	195	3	2.534	0.600	0.605	0.009
17	REN105L03	195	8	2.520	0.605	0.603	-0.003
18	REN162C04	195	6	2.842	0.672	0.648	-0.036
19	REN169D01	195	5	4.095	0.790	0.756	-0.045
20	REN169O18	195	6	3.183	0.656	0.686	0.043
21	REN247M23	195	5	2.706	0.579	0.630	0.081
22	REN54P11	195	8	5.520	0.800	0.819	0.023
23	REN64E19	195	9	4.752	0.831	0.790	-0.052
24	VGL0760	195	10	2.681	0.621	0.627	0.010
25	VGL0910	195	8	3.150	0.672	0.682	0.016
26	VGL1063	195	10	1.816	0.436	0.449	0.030
27	VGL1165	195	10	3.673	0.759	0.728	-0.043
28	VGL1828	195	10	4.748	0.769	0.789	0.026
29	VGL2009	195	7	2.488	0.595	0.598	0.005
30	VGL2409	195	9	4.300	0.749	0.767	0.024
31	VGL2918	195	11	4.735	0.831	0.789	-0.053
32	VGL3008	195	8	4.195	0.769	0.762	-0.010
33	VGL3235	195	8	4.858	0.795	0.794	-0.001

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	195	11	3.832	0.703	0.739	0.049
2	DLA I-4ACA	195	7	3.212	0.667	0.689	0.032
3	DLA I-4BCT	195	6	2.191	0.569	0.544	-0.047
4	DLA1131	195	9	3.274	0.708	0.695	-0.019
5	5ACA	195	6	3.257	0.697	0.693	-0.006
6	5ACT	195	5	3.357	0.677	0.702	0.036
7	5BCA	195	7	2.801	0.605	0.643	0.059

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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