Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=119)
1007	380 372 281 182	0.004
1054	382 379 277 184	0.366
1081	395 379 289 178	0.008
1091	381 371 277 181	0.227
1109	381 379 291 186	0.021
1133	378 365 287 172	0.008
1160	386 369 289 176	0.013
1191	388 373 260 186	0.227
1192	376 373 281 182	0.004
1193	382 383 277 184	0.004
1194	385 369 291 178	0.013
1195	388 373 289 181	0.017
1196	390 372 291 180	0.021
1197	390 373 289 186	0.008
1198	392 371 277 184	0.059

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=119)
2001	343 324 284	0.008
2006	339 325 280	0.004
2015	339 327 280	0.059
2018	339 324 284	0.218
2032	339 323 280	0.008
2067	343 322 284	0.214
2083	339 324 282	0.008
2097	343 327 276	0.013
2098	343 323 282	0.013
2105	341 325 276	0.021
2106	341 325 286	0.374
2107	343 322 286	0.004
2108	343 324 294	0.017
2109	345 322 276	0.021
2110	347 325 268	0.008
2111	351 324 276	0.004
2129	343 322 294	0.004

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=119)
1	AHT121	90	0.004
		92	0.063
		96	0.004
		100	0.256
		102	0.252
		104	0.416
		106	0.004
2	AHT137	131	0.122
		133	0.202
		135	0.004
		141	0.097
		145	0.130
		149	0.113
		151	0.122
		153	0.210
3	AHTH130	111	0.008
		119	0.008
		121	0.836
		125	0.008
		129	0.004
		131	0.013
		133	0.042
		135	0.080
4	AHTh171-A	219	0.815
		221	0.004
		225	0.017
		227	0.139
		229	0.008
		233	0.017
5	AHTh260	236	0.109
		242	0.034
		244	0.580
		246	0.143
		248	0.050
		252	0.084
6	AHTk211	87	0.269
		89	0.185
		91	0.332
		93	0.025
		95	0.189
7	AHTk253	282	0.113
		286	0.126
		288	0.298
		290	0.311
		292	0.092
		294	0.059
8	C22.279	116	0.059
		118	0.046
		120	0.235
		122	0.008
		124	0.315
		126	0.122
		130	0.105
		132	0.109
9	FH2001	124	0.021
		132	0.105
		140	0.088
		144	0.332
		148	0.004
		152	0.155
		154	0.290
		156	0.004
10	FH2054	152	0.017
		156	0.113
		160	0.487
		164	0.164
		168	0.092
		172	0.084
		176	0.042
11	FH2848	230	0.021
		232	0.038
		234	0.008
		238	0.294
		242	0.639
12	INRA21	95	0.130
		97	0.794
		99	0.025
		101	0.050
13	INU005	106	0.286
		124	0.450
		126	0.063
		130	0.109
		132	0.092
14	INU030	142	0.038
		144	0.416
		146	0.021
		148	0.038
		150	0.454
		152	0.034
15	INU055	210	0.378
		212	0.265
		214	0.134
		216	0.155
		220	0.055
		222	0.013
16	LEI004	85	0.340
		95	0.521
		97	0.139
17	REN105L03	227	0.113
		229	0.097
		231	0.017
		233	0.017
		235	0.059
		237	0.613
		239	0.071
		241	0.013
18	REN162C04	202	0.092
		204	0.025
		206	0.458
		208	0.004
		210	0.345
		212	0.076
19	REN169D01	202	0.349
		210	0.076
		212	0.197
		216	0.248
		218	0.130
20	REN169O18	162	0.029
		164	0.450
		166	0.160
		168	0.239
		170	0.122
21	REN247M23	268	0.231
		270	0.525
		272	0.147
		276	0.013
		278	0.084
22	REN54P11	226	0.017
		228	0.172
		230	0.063
		232	0.076
		236	0.021
		238	0.160
		240	0.269
		242	0.223
23	REN64E19	139	0.004
		141	0.008
		145	0.147
		147	0.050
		149	0.357
		151	0.164
		153	0.101
		155	0.130
		157	0.038
24	VGL0760	13	0.555
		14	0.197
		15	0.017
		16	0.013
		17	0.134
		19	0.013
		21.2	0.042
		22.2	0.013
		23.2	0.013
		24.2	0.004
25	VGL0910	16.1	0.227
		17.1	0.013
		18.1	0.218
		19.1	0.487
		20.1	0.038
		21.1	0.017
26	VGL1063	10	0.013
		12	0.021
		13	0.034
		14	0.710
		15	0.076
		16	0.034
		17	0.008
		18	0.097
		19	0.008
27	VGL1165	15	0.008
		18	0.021
		21	0.076
		26	0.067
		27	0.109
		28	0.147
		30	0.105
		31	0.454
		32	0.013
28	VGL1828	14	0.034
		15	0.303
		16	0.038
		18	0.025
		19	0.151
		20	0.034
		20.3	0.017
		21	0.303
		22	0.092
		23	0.004
29	VGL2009	9	0.034
		11	0.008
		12	0.122
		13	0.588
		14	0.139
		15	0.105
		16	0.004
30	VGL2409	13	0.008
		14	0.004
		14.3	0.013
		15	0.223
		16	0.366
		17	0.084
		18	0.244
		19	0.059
31	VGL2918	12	0.038
		13	0.151
		14	0.239
		15	0.046
		16	0.008
		17.3	0.021
		18.3	0.071
		19.3	0.349
		20.3	0.013
		21.3	0.008
		22.3	0.055
32	VGL3008	12	0.202
		14	0.168
		15	0.105
		16	0.008
		17	0.055
		18	0.399
		19	0.025
		20	0.038
33	VGL3235	12	0.261
		13	0.277
		14	0.113
		15	0.029
		16	0.008
		17	0.206
		18	0.067
		19	0.038

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Shiba Inu	Mean	119	6.970	3.449	0.662	0.666	0.008
	SE		0.319	0.208	0.025	0.024	0.008

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Shiba Inu	Mean	119	7.143	3.107	0.641	0.668	0.038
	SE		0.683	0.190	0.022	0.025	0.013

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	119	7	3.265	0.672	0.694	0.031
2	AHT137	119	8	6.506	0.840	0.846	0.007
3	AHTH130	119	8	1.413	0.269	0.292	0.080
4	AHTh171-A	119	6	1.461	0.328	0.316	-0.038
5	AHTh260	119	6	2.637	0.588	0.621	0.052
6	AHTk211	119	5	3.952	0.790	0.747	-0.058
7	AHTk253	119	6	4.416	0.782	0.774	-0.010
8	C22.279	119	8	5.047	0.824	0.802	-0.027
9	FH2001	119	8	4.207	0.773	0.762	-0.014
10	FH2054	119	7	3.391	0.664	0.705	0.058
11	FH2848	119	5	2.015	0.496	0.504	0.016
12	INRA21	119	4	1.537	0.361	0.349	-0.035
13	INU005	119	5	3.245	0.689	0.692	0.004
14	INU030	119	6	2.608	0.655	0.617	-0.063
15	INU055	119	6	3.869	0.731	0.742	0.014
16	LEI004	119	3	2.460	0.580	0.593	0.023
17	REN105L03	119	8	2.452	0.588	0.592	0.007
18	REN162C04	119	6	2.912	0.655	0.657	0.002
19	REN169D01	119	5	4.086	0.790	0.755	-0.046
20	REN169O18	119	5	3.326	0.672	0.699	0.039
21	REN247M23	119	5	2.793	0.563	0.642	0.123
22	REN54P11	119	8	5.334	0.773	0.813	0.048
23	REN64E19	119	9	4.826	0.832	0.793	-0.049
24	VGL0760	119	10	2.722	0.605	0.633	0.044
25	VGL0910	119	6	2.953	0.681	0.661	-0.029
26	VGL1063	119	9	1.915	0.471	0.478	0.015
27	VGL1165	119	9	3.825	0.765	0.739	-0.035
28	VGL1828	119	10	4.564	0.714	0.781	0.085
29	VGL2009	119	7	2.549	0.571	0.608	0.060
30	VGL2409	119	8	3.947	0.748	0.747	-0.002
31	VGL2918	119	11	4.667	0.832	0.786	-0.059
32	VGL3008	119	8	4.092	0.748	0.756	0.010
33	VGL3235	119	8	4.833	0.782	0.793	0.015

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	119	11	3.811	0.689	0.738	0.066
2	DLA I-4ACA	119	7	3.282	0.664	0.695	0.045
3	DLA I-4BCT	119	6	2.056	0.521	0.514	-0.014
4	DLA1131	119	8	3.226	0.697	0.690	-0.011
5	5ACA	119	6	3.124	0.655	0.680	0.036
6	5ACT	119	5	3.370	0.664	0.703	0.056
7	5BCA	119	7	2.881	0.597	0.653	0.086

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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