Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Sep 28, 2020

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiba Inu (n=119)
1007380 372 281 1820.004
1054382 379 277 1840.366
1081395 379 289 1780.008
1091381 371 277 1810.227
1109381 379 291 1860.021
1133378 365 287 1720.008
1160386 369 289 1760.013
1191388 373 260 1860.227
1192376 373 281 1820.004
1193382 383 277 1840.004
1194385 369 291 1780.013
1195388 373 289 1810.017
1196390 372 291 1800.021
1197390 373 289 1860.008
1198392 371 277 1840.059

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiba Inu (n=119)
2001343 324 2840.008
2006339 325 2800.004
2015339 327 2800.059
2018339 324 2840.218
2032339 323 2800.008
2067343 322 2840.214
2083339 324 2820.008
2097343 327 2760.013
2098343 323 2820.013
2105341 325 2760.021
2106341 325 2860.374
2107343 322 2860.004
2108343 324 2940.017
2109345 322 2760.021
2110347 325 2680.008
2111351 324 2760.004
2129343 322 2940.004

Allele Frequencies

#Locus NameAlleleShiba Inu (n=119)
1AHT121 900.004
920.063
960.004
1000.256
1020.252
1040.416
1060.004
2AHT137 1310.122
1330.202
1350.004
1410.097
1450.130
1490.113
1510.122
1530.210
3AHTH130 1110.008
1190.008
1210.836
1250.008
1290.004
1310.013
1330.042
1350.080
4AHTh171-A 2190.815
2210.004
2250.017
2270.139
2290.008
2330.017
5AHTh260 2360.109
2420.034
2440.580
2460.143
2480.050
2520.084
6AHTk211 870.269
890.185
910.332
930.025
950.189
7AHTk253 2820.113
2860.126
2880.298
2900.311
2920.092
2940.059
8C22.279 1160.059
1180.046
1200.235
1220.008
1240.315
1260.122
1300.105
1320.109
9FH2001 1240.021
1320.105
1400.088
1440.332
1480.004
1520.155
1540.290
1560.004
10FH2054 1520.017
1560.113
1600.487
1640.164
1680.092
1720.084
1760.042
11FH2848 2300.021
2320.038
2340.008
2380.294
2420.639
12INRA21 950.130
970.794
990.025
1010.050
13INU005 1060.286
1240.450
1260.063
1300.109
1320.092
14INU030 1420.038
1440.416
1460.021
1480.038
1500.454
1520.034
15INU055 2100.378
2120.265
2140.134
2160.155
2200.055
2220.013
16LEI004 850.340
950.521
970.139
17REN105L03 2270.113
2290.097
2310.017
2330.017
2350.059
2370.613
2390.071
2410.013
18REN162C04 2020.092
2040.025
2060.458
2080.004
2100.345
2120.076
19REN169D01 2020.349
2100.076
2120.197
2160.248
2180.130
20REN169O18 1620.029
1640.450
1660.160
1680.239
1700.122
21REN247M23 2680.231
2700.525
2720.147
2760.013
2780.084
22REN54P11 2260.017
2280.172
2300.063
2320.076
2360.021
2380.160
2400.269
2420.223
23REN64E19 1390.004
1410.008
1450.147
1470.050
1490.357
1510.164
1530.101
1550.130
1570.038
24VGL0760 130.555
140.197
150.017
160.013
170.134
190.013
21.20.042
22.20.013
23.20.013
24.20.004
25VGL0910 16.10.227
17.10.013
18.10.218
19.10.487
20.10.038
21.10.017
26VGL1063 100.013
120.021
130.034
140.710
150.076
160.034
170.008
180.097
190.008
27VGL1165 150.008
180.021
210.076
260.067
270.109
280.147
300.105
310.454
320.013
28VGL1828 140.034
150.303
160.038
180.025
190.151
200.034
20.30.017
210.303
220.092
230.004
29VGL2009 90.034
110.008
120.122
130.588
140.139
150.105
160.004
30VGL2409 130.008
140.004
14.30.013
150.223
160.366
170.084
180.244
190.059
31VGL2918 120.038
130.151
140.239
150.046
160.008
17.30.021
18.30.071
19.30.349
20.30.013
21.30.008
22.30.055
32VGL3008 120.202
140.168
150.105
160.008
170.055
180.399
190.025
200.038
33VGL3235 120.261
130.277
140.113
150.029
160.008
170.206
180.067
190.038

Standard genetic assessment based on 33 autosomal STR loci

  NNaNeHoHeF
Shiba InuMean1196.9703.4490.6620.6660.008
 SE 0.3190.2080.0250.0240.008

Standard genetic assessment based on 7 STRs in the DLA region

  NNaNeHoHeF
Shiba InuMean1197.1433.1070.6410.6680.038
 SE 0.6830.1900.0220.0250.013

Standard genetic assessment for individual STR loci

#LocusNNaNeHoHeF
1AHT12111973.2650.6720.6940.031
2AHT13711986.5060.8400.8460.007
3AHTH13011981.4130.2690.2920.080
4AHTh171-A11961.4610.3280.316-0.038
5AHTh26011962.6370.5880.6210.052
6AHTk21111953.9520.7900.747-0.058
7AHTk25311964.4160.7820.774-0.010
8C22.27911985.0470.8240.802-0.027
9FH200111984.2070.7730.762-0.014
10FH205411973.3910.6640.7050.058
11FH284811952.0150.4960.5040.016
12INRA2111941.5370.3610.349-0.035
13INU00511953.2450.6890.6920.004
14INU03011962.6080.6550.617-0.063
15INU05511963.8690.7310.7420.014
16LEI00411932.4600.5800.5930.023
17REN105L0311982.4520.5880.5920.007
18REN162C0411962.9120.6550.6570.002
19REN169D0111954.0860.7900.755-0.046
20REN169O1811953.3260.6720.6990.039
21REN247M2311952.7930.5630.6420.123
22REN54P1111985.3340.7730.8130.048
23REN64E1911994.8260.8320.793-0.049
24VGL0760119102.7220.6050.6330.044
25VGL091011962.9530.6810.661-0.029
26VGL106311991.9150.4710.4780.015
27VGL116511993.8250.7650.739-0.035
28VGL1828119104.5640.7140.7810.085
29VGL200911972.5490.5710.6080.060
30VGL240911983.9470.7480.747-0.002
31VGL2918119114.6670.8320.786-0.059
32VGL300811984.0920.7480.7560.010
33VGL323511984.8330.7820.7930.015

Standard genetic assessment for 7 STRs in the DLA region

#LocusNNaNeHoHeF
1DLA I-3CCA119113.8110.6890.7380.066
2DLA I-4ACA11973.2820.6640.6950.045
3DLA I-4BCT11962.0560.5210.514-0.014
4DLA113111983.2260.6970.690-0.011
55ACA11963.1240.6550.6800.036
65ACT11953.3700.6640.7030.056
75BCA11972.8810.5970.6530.086