Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Feb 22, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=181)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.359
1081	395 379 289 178	0.006
1091	381 371 277 181	0.221
1109	381 379 291 186	0.028
1133	378 365 287 172	0.006
1160	386 369 289 176	0.011
1191	388 373 260 186	0.232
1192	376 373 281 182	0.017
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.022
1196	390 372 291 180	0.017
1197	390 373 289 186	0.017
1198	392 371 277 184	0.047
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=181)
2001	343 324 284	0.017
2006	339 325 280	0.003
2015	339 327 280	0.047
2016	339 323 284	0.003
2018	339 324 284	0.227
2032	339 323 280	0.006
2067	343 322 284	0.213
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.017
2106	341 325 286	0.365
2107	343 322 286	0.003
2108	343 324 294	0.022
2109	345 322 276	0.028
2110	347 325 268	0.006
2111	351 324 276	0.017
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=181)
1	AHT121	90	0.003
		92	0.069
		96	0.003
		100	0.257
		102	0.235
		104	0.431
		106	0.003
2	AHT137	131	0.119
		133	0.196
		135	0.003
		137	0.025
		141	0.088
		145	0.094
		149	0.133
		151	0.116
		153	0.227
3	AHTH130	111	0.011
		115	0.003
		119	0.006
		121	0.840
		125	0.011
		129	0.003
		131	0.008
		133	0.036
		135	0.083
4	AHTh171-A	219	0.831
		221	0.003
		225	0.011
		227	0.133
		229	0.008
		233	0.014
5	AHTh260	236	0.099
		242	0.033
		244	0.558
		246	0.174
		248	0.064
		252	0.072
6	AHTk211	87	0.254
		89	0.185
		91	0.359
		93	0.022
		95	0.180
7	AHTk253	282	0.144
		286	0.130
		288	0.282
		290	0.290
		292	0.105
		294	0.050
8	C22.279	116	0.050
		118	0.044
		120	0.215
		122	0.006
		124	0.337
		126	0.110
		130	0.116
		132	0.122
9	FH2001	124	0.039
		132	0.097
		140	0.075
		144	0.359
		148	0.006
		152	0.141
		154	0.282
		156	0.003
10	FH2054	152	0.014
		156	0.116
		160	0.467
		164	0.163
		168	0.122
		172	0.075
		176	0.044
11	FH2848	230	0.017
		232	0.033
		234	0.008
		238	0.337
		242	0.602
		246	0.003
12	INRA21	95	0.133
		97	0.787
		99	0.019
		101	0.061
13	INU005	106	0.285
		124	0.439
		126	0.061
		130	0.124
		132	0.091
14	INU030	142	0.033
		144	0.453
		146	0.022
		148	0.044
		150	0.420
		152	0.028
15	INU055	210	0.398
		212	0.273
		214	0.135
		216	0.138
		220	0.047
		222	0.008
16	LEI004	85	0.378
		95	0.486
		97	0.135
17	REN105L03	227	0.094
		229	0.124
		231	0.025
		233	0.014
		235	0.064
		237	0.602
		239	0.064
		241	0.014
18	REN162C04	202	0.080
		204	0.017
		206	0.459
		208	0.003
		210	0.356
		212	0.086
19	REN169D01	202	0.326
		210	0.075
		212	0.193
		216	0.285
		218	0.122
20	REN169O18	162	0.030
		164	0.472
		166	0.157
		168	0.213
		170	0.124
		172	0.003
21	REN247M23	268	0.249
		270	0.525
		272	0.130
		276	0.008
		278	0.088
22	REN54P11	226	0.011
		228	0.169
		230	0.077
		232	0.080
		236	0.017
		238	0.207
		240	0.235
		242	0.204
23	REN64E19	139	0.003
		141	0.008
		145	0.157
		147	0.055
		149	0.356
		151	0.152
		153	0.102
		155	0.135
		157	0.030
24	VGL0760	13	0.586
		14	0.171
		15	0.019
		16	0.025
		17	0.116
		19	0.008
		21.2	0.052
		22.2	0.008
		23.2	0.011
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.273
		17.1	0.008
		18.1	0.185
		19.1	0.450
		20.1	0.061
		21.1	0.011
		22.1	0.008
26	VGL1063	10	0.008
		12	0.014
		13	0.033
		14	0.729
		15	0.088
		16	0.028
		17	0.008
		18	0.083
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.022
		21	0.077
		26	0.064
		27	0.102
		28	0.130
		30	0.127
		31	0.459
		32	0.011
28	VGL1828	14	0.030
		15	0.285
		16	0.052
		18	0.025
		19	0.149
		20	0.030
		20.3	0.025
		21	0.301
		22	0.099
		23	0.003
29	VGL2009	9	0.033
		11	0.006
		12	0.133
		13	0.588
		14	0.152
		15	0.086
		16	0.003
30	VGL2409	13	0.008
		13.3	0.030
		14	0.003
		14.3	0.014
		15	0.193
		16	0.370
		17	0.091
		18	0.235
		19	0.055
31	VGL2918	12	0.061
		13	0.146
		14	0.202
		15	0.030
		16	0.008
		17.3	0.022
		18.3	0.066
		19.3	0.359
		20.3	0.008
		21.3	0.014
		22.3	0.083
32	VGL3008	12	0.196
		14	0.204
		15	0.088
		16	0.014
		17	0.058
		18	0.384
		19	0.019
		20	0.036
33	VGL3235	12	0.243
		13	0.293
		14	0.099
		15	0.030
		16	0.008
		17	0.210
		18	0.077
		19	0.039

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	181	7.242	3.469	0.663	0.667	0.008
	SE		0.335	0.212	0.026	0.025	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	181	7.286	3.123	0.653	0.671	0.025
	SE		0.720	0.178	0.018	0.022	0.017

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	181	7	3.209	0.674	0.688	0.021
2	AHT137	181	9	6.571	0.823	0.848	0.029
3	AHTH130	181	9	1.401	0.254	0.286	0.112
4	AHTh171-A	181	6	1.410	0.298	0.291	-0.026
5	AHTh260	181	6	2.764	0.635	0.638	0.004
6	AHTk211	181	5	3.838	0.757	0.739	-0.024
7	AHTk253	181	6	4.662	0.773	0.785	0.015
8	C22.279	181	8	4.880	0.801	0.795	-0.008
9	FH2001	181	8	4.087	0.779	0.755	-0.031
10	FH2054	181	7	3.566	0.691	0.720	0.040
11	FH2848	181	6	2.093	0.492	0.522	0.059
12	INRA21	181	4	1.559	0.354	0.359	0.014
13	INU005	181	5	3.319	0.718	0.699	-0.028
14	INU030	181	6	2.592	0.635	0.614	-0.035
15	INU055	181	6	3.667	0.718	0.727	0.012
16	LEI004	181	3	2.513	0.591	0.602	0.018
17	REN105L03	181	8	2.525	0.591	0.604	0.021
18	REN162C04	181	6	2.847	0.663	0.649	-0.022
19	REN169D01	181	5	4.083	0.785	0.755	-0.039
20	REN169O18	181	6	3.230	0.663	0.690	0.040
21	REN247M23	181	5	2.762	0.580	0.638	0.091
22	REN54P11	181	8	5.524	0.790	0.819	0.035
23	REN64E19	181	9	4.815	0.840	0.792	-0.060
24	VGL0760	181	10	2.566	0.602	0.610	0.013
25	VGL0910	181	8	3.167	0.685	0.684	-0.001
26	VGL1063	181	10	1.822	0.442	0.451	0.020
27	VGL1165	181	10	3.782	0.762	0.736	-0.036
28	VGL1828	181	10	4.771	0.757	0.790	0.042
29	VGL2009	181	7	2.529	0.597	0.605	0.013
30	VGL2409	181	9	4.130	0.735	0.758	0.030
31	VGL2918	181	11	4.813	0.840	0.792	-0.060
32	VGL3008	181	8	4.154	0.757	0.759	0.003
33	VGL3235	181	8	4.825	0.796	0.793	-0.004

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	181	11	3.799	0.691	0.737	0.063
2	DLA I-4ACA	181	7	3.219	0.674	0.689	0.022
3	DLA I-4BCT	181	6	2.173	0.569	0.540	-0.054
4	DLA1131	181	9	3.278	0.696	0.695	-0.002
5	5ACA	181	6	3.242	0.685	0.692	0.009
6	5ACT	181	5	3.339	0.669	0.701	0.046
7	5BCA	181	7	2.809	0.586	0.644	0.091

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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