Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jun 17, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiba Inu (n=170)
1007380 372 281 1820.003
1054382 379 277 1840.353
1081395 379 289 1780.006
1091381 371 277 1810.224
1109381 379 291 1860.029
1133378 365 287 1720.006
1160386 369 289 1760.012
1191388 373 260 1860.232
1192376 373 281 1820.018
1193382 383 277 1840.003
1194385 369 291 1780.009
1195388 373 289 1810.021
1196390 372 291 1800.018
1197390 373 289 1860.015
1198392 371 277 1840.050
1281382 365 277 1860.003

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiba Inu (n=170)
2001343 324 2840.015
2006339 325 2800.003
2015339 327 2800.050
2018339 324 2840.226
2032339 323 2800.006
2067343 322 2840.215
2071339 322 2860.003
2083339 324 2820.006
2097343 327 2760.009
2098343 323 2820.012
2105341 325 2760.018
2106341 325 2860.359
2107343 322 2860.003
2108343 324 2940.021
2109345 322 2760.029
2110347 325 2680.006
2111351 324 2760.018
2129343 322 2940.003

Allele Frequencies

#Locus NameAlleleShiba Inu (n=170)
1AHT121 900.003
920.068
960.003
1000.253
1020.241
1040.429
1060.003
2AHT137 1310.121
1330.200
1350.003
1370.021
1410.094
1450.100
1490.129
1510.103
1530.229
3AHTH130 1110.012
1150.003
1190.006
1210.829
1250.012
1290.003
1310.009
1330.038
1350.088
4AHTh171-A 2190.826
2210.003
2250.012
2270.135
2290.009
2330.015
5AHTh260 2360.103
2420.032
2440.559
2460.165
2480.065
2520.076
6AHTk211 870.259
890.185
910.347
930.021
950.188
7AHTk253 2820.126
2860.126
2880.294
2900.297
2920.106
2940.050
8C22.279 1160.050
1180.038
1200.221
1220.006
1240.332
1260.118
1300.118
1320.118
9FH2001 1240.024
1320.100
1400.076
1440.353
1480.006
1520.144
1540.294
1560.003
10FH2054 1520.015
1560.115
1600.468
1640.162
1680.115
1720.079
1760.047
11FH2848 2300.018
2320.029
2340.009
2380.324
2420.618
2460.003
12INRA21 950.129
970.791
990.021
1010.059
13INU005 1060.291
1240.441
1260.062
1300.118
1320.088
14INU030 1420.035
1440.435
1460.024
1480.041
1500.435
1520.029
15INU055 2100.385
2120.282
2140.141
2160.132
2200.050
2220.009
16LEI004 850.365
950.497
970.138
17REN105L03 2270.091
2290.124
2310.026
2330.015
2350.068
2370.597
2390.065
2410.015
18REN162C04 2020.085
2040.018
2060.462
2080.003
2100.353
2120.079
19REN169D01 2020.329
2100.074
2120.191
2160.276
2180.129
20REN169O18 1620.032
1640.468
1660.165
1680.206
1700.126
1720.003
21REN247M23 2680.247
2700.532
2720.129
2760.009
2780.082
22REN54P11 2260.012
2280.162
2300.079
2320.082
2360.018
2380.203
2400.244
2420.200
23REN64E19 1390.003
1410.006
1450.156
1470.047
1490.362
1510.156
1530.106
1550.132
1570.032
24VGL0760 130.565
140.179
150.021
160.026
170.124
190.009
21.20.056
22.20.009
23.20.009
24.20.003
25VGL0910 15.10.003
16.10.265
17.10.009
18.10.197
19.10.459
20.10.053
21.10.012
22.10.003
26VGL1063 100.009
120.015
130.029
140.724
150.091
160.029
170.009
180.085
190.006
200.003
27VGL1165 150.006
160.003
180.021
210.079
260.068
270.100
280.135
300.124
310.453
320.012
28VGL1828 140.032
150.285
160.050
180.026
190.156
200.029
20.30.024
210.306
220.088
230.003
29VGL2009 90.035
110.006
120.129
130.588
140.147
150.091
160.003
30VGL2409 130.009
13.30.021
140.003
14.30.015
150.197
160.362
170.094
180.241
190.059
31VGL2918 120.053
130.156
140.215
150.032
160.006
17.30.024
18.30.071
19.30.350
20.30.009
21.30.015
22.30.071
32VGL3008 120.200
140.182
150.091
160.015
170.053
180.400
190.021
200.038
33VGL3235 120.244
130.285
140.106
150.029
160.009
170.212
180.074
190.041

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

  NNaNeHoHeF
Mean1707.2423.4660.6650.6670.007
 SE 0.3350.2090.0260.0240.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

  NNaNeHoHeF
Mean1707.1433.1470.6570.6730.022
 SE 0.6830.1810.0180.0230.016

Standard genetic assessment for individual STR loci

Shiba Inu

#LocusNNaNeHoHeF
1AHT12117073.2140.6710.6890.027
2AHT13717096.5020.8290.8460.020
3AHTH13017091.4340.2710.3020.105
4AHTh171-A17061.4250.3060.298-0.026
5AHTh26017062.7690.6180.6390.033
6AHTk21117053.8820.7650.742-0.030
7AHTk25317064.5360.7710.7800.011
8C22.27917084.8870.8000.795-0.006
9FH200117084.0280.7710.752-0.025
10FH205417073.5730.6760.7200.061
11FH284817062.0520.4940.5130.036
12INRA2117041.5470.3470.3530.018
13INU00517053.2800.7180.695-0.032
14INU03017062.6090.6470.617-0.049
15INU05517063.7290.7410.732-0.013
16LEI00417032.5050.6000.6010.001
17REN105L0317082.5640.5940.6100.026
18REN162C0417062.8430.6530.648-0.007
19REN169D0117054.1040.7940.756-0.050
20REN169O1817063.2760.6650.6950.043
21REN247M2317052.7170.5710.6320.097
22REN54P1117085.5410.7940.8200.031
23REN64E1917094.7280.8290.788-0.052
24VGL0760170102.6970.6290.629-0.000
25VGL091017083.1010.6760.6780.002
26VGL1063170101.8480.4530.4590.013
27VGL1165170103.8430.7760.740-0.050
28VGL1828170104.7010.7590.7870.036
29VGL200917072.5380.5880.6060.029
30VGL240917094.1510.7290.7590.039
31VGL2918170114.8170.8470.792-0.069
32VGL300817084.0570.7650.754-0.015
33VGL323517084.8760.7820.7950.016

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#LocusNNaNeHoHeF
1DLA I-3CCA170113.8330.6940.7390.061
2DLA I-4ACA17073.2480.6820.6920.014
3DLA I-4BCT17062.1730.5710.540-0.057
4DLA113117083.2950.7000.696-0.005
55ACA17063.2690.6820.6940.017
65ACT17053.3600.6760.7020.037
75BCA17072.8520.5940.6490.085