Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=179)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.360
1081	395 379 289 178	0.006
1091	381 371 277 181	0.221
1109	381 379 291 186	0.028
1133	378 365 287 172	0.006
1160	386 369 289 176	0.011
1191	388 373 260 186	0.229
1192	376 373 281 182	0.017
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.022
1196	390 372 291 180	0.017
1197	390 373 289 186	0.017
1198	392 371 277 184	0.047
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=179)
2001	343 324 284	0.017
2006	339 325 280	0.003
2015	339 327 280	0.047
2016	339 323 284	0.003
2018	339 324 284	0.223
2032	339 323 280	0.006
2067	343 322 284	0.212
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.017
2106	341 325 286	0.366
2107	343 322 286	0.003
2108	343 324 294	0.022
2109	345 322 276	0.028
2110	347 325 268	0.006
2111	351 324 276	0.017
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=179)
1	AHT121	90	0.003
		92	0.070
		96	0.003
		100	0.254
		102	0.232
		104	0.436
		106	0.003
2	AHT137	131	0.120
		133	0.198
		135	0.003
		137	0.025
		141	0.089
		145	0.095
		149	0.134
		151	0.109
		153	0.226
3	AHTH130	111	0.011
		115	0.003
		119	0.006
		121	0.838
		125	0.011
		129	0.003
		131	0.008
		133	0.036
		135	0.084
4	AHTh171-A	219	0.830
		221	0.003
		225	0.011
		227	0.134
		229	0.008
		233	0.014
5	AHTh260	236	0.101
		242	0.034
		244	0.556
		246	0.173
		248	0.064
		252	0.073
6	AHTk211	87	0.257
		89	0.184
		91	0.355
		93	0.022
		95	0.182
7	AHTk253	282	0.137
		286	0.131
		288	0.285
		290	0.291
		292	0.106
		294	0.050
8	C22.279	116	0.050
		118	0.045
		120	0.215
		122	0.006
		124	0.335
		126	0.112
		130	0.117
		132	0.120
9	FH2001	124	0.036
		132	0.095
		140	0.075
		144	0.358
		148	0.006
		152	0.142
		154	0.285
		156	0.003
10	FH2054	152	0.014
		156	0.115
		160	0.466
		164	0.162
		168	0.123
		172	0.075
		176	0.045
11	FH2848	230	0.017
		232	0.031
		234	0.008
		238	0.338
		242	0.603
		246	0.003
12	INRA21	95	0.131
		97	0.791
		99	0.020
		101	0.059
13	INU005	106	0.285
		124	0.439
		126	0.061
		130	0.126
		132	0.089
14	INU030	142	0.034
		144	0.453
		146	0.022
		148	0.045
		150	0.419
		152	0.028
15	INU055	210	0.397
		212	0.277
		214	0.137
		216	0.134
		220	0.047
		222	0.008
16	LEI004	85	0.374
		95	0.489
		97	0.137
17	REN105L03	227	0.095
		229	0.126
		231	0.025
		233	0.014
		235	0.064
		237	0.598
		239	0.064
		241	0.014
18	REN162C04	202	0.081
		204	0.017
		206	0.455
		208	0.003
		210	0.358
		212	0.087
19	REN169D01	202	0.327
		210	0.073
		212	0.193
		216	0.285
		218	0.123
20	REN169O18	162	0.031
		164	0.469
		166	0.159
		168	0.212
		170	0.126
		172	0.003
21	REN247M23	268	0.249
		270	0.522
		272	0.131
		276	0.008
		278	0.089
22	REN54P11	226	0.011
		228	0.170
		230	0.075
		232	0.081
		236	0.017
		238	0.204
		240	0.237
		242	0.204
23	REN64E19	139	0.003
		141	0.008
		145	0.159
		147	0.053
		149	0.358
		151	0.154
		153	0.103
		155	0.131
		157	0.031
24	VGL0760	13	0.581
		14	0.173
		15	0.020
		16	0.025
		17	0.117
		19	0.008
		21.2	0.053
		22.2	0.008
		23.2	0.011
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.274
		17.1	0.008
		18.1	0.187
		19.1	0.453
		20.1	0.059
		21.1	0.011
		22.1	0.006
26	VGL1063	10	0.008
		12	0.014
		13	0.034
		14	0.726
		15	0.089
		16	0.028
		17	0.008
		18	0.084
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.022
		21	0.078
		26	0.064
		27	0.103
		28	0.131
		30	0.120
		31	0.461
		32	0.011
28	VGL1828	14	0.031
		15	0.285
		16	0.053
		18	0.025
		19	0.151
		20	0.031
		20.3	0.025
		21	0.296
		22	0.101
		23	0.003
29	VGL2009	9	0.034
		11	0.006
		12	0.131
		13	0.587
		14	0.154
		15	0.087
		16	0.003
30	VGL2409	13	0.008
		13.3	0.031
		14	0.003
		14.3	0.014
		15	0.196
		16	0.366
		17	0.092
		18	0.235
		19	0.056
31	VGL2918	12	0.061
		13	0.148
		14	0.204
		15	0.031
		16	0.008
		17.3	0.022
		18.3	0.067
		19.3	0.355
		20.3	0.008
		21.3	0.014
		22.3	0.081
32	VGL3008	12	0.193
		14	0.201
		15	0.089
		16	0.014
		17	0.059
		18	0.388
		19	0.020
		20	0.036
33	VGL3235	12	0.243
		13	0.291
		14	0.101
		15	0.031
		16	0.008
		17	0.212
		18	0.075
		19	0.039

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	179	7.242	3.475	0.664	0.667	0.008
	SE		0.335	0.212	0.026	0.025	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	179	7.286	3.125	0.650	0.671	0.030
	SE		0.720	0.178	0.018	0.022	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	179	7	3.193	0.670	0.687	0.024
2	AHT137	179	9	6.560	0.827	0.848	0.024
3	AHTH130	179	9	1.407	0.257	0.289	0.111
4	AHTh171-A	179	6	1.415	0.302	0.293	-0.028
5	AHTh260	179	6	2.781	0.637	0.640	0.005
6	AHTk211	179	5	3.856	0.760	0.741	-0.026
7	AHTk253	179	6	4.644	0.777	0.785	0.010
8	C22.279	179	8	4.906	0.799	0.796	-0.003
9	FH2001	179	8	4.075	0.777	0.755	-0.029
10	FH2054	179	7	3.572	0.687	0.720	0.046
11	FH2848	179	6	2.085	0.486	0.520	0.066
12	INRA21	179	4	1.548	0.346	0.354	0.022
13	INU005	179	5	3.322	0.715	0.699	-0.023
14	INU030	179	6	2.599	0.631	0.615	-0.026
15	INU055	179	6	3.665	0.726	0.727	0.001
16	LEI004	179	3	2.514	0.592	0.602	0.017
17	REN105L03	179	8	2.555	0.598	0.609	0.018
18	REN162C04	179	6	2.861	0.665	0.651	-0.022
19	REN169D01	179	5	4.073	0.782	0.754	-0.037
20	REN169O18	179	6	3.253	0.665	0.693	0.040
21	REN247M23	179	5	2.778	0.581	0.640	0.092
22	REN54P11	179	8	5.518	0.793	0.819	0.031
23	REN64E19	179	9	4.795	0.838	0.791	-0.059
24	VGL0760	179	10	2.595	0.609	0.615	0.009
25	VGL0910	179	8	3.141	0.682	0.682	0.000
26	VGL1063	179	10	1.836	0.447	0.455	0.018
27	VGL1165	179	10	3.764	0.765	0.734	-0.042
28	VGL1828	179	10	4.815	0.760	0.792	0.041
29	VGL2009	179	7	2.541	0.598	0.606	0.014
30	VGL2409	179	9	4.166	0.737	0.760	0.030
31	VGL2918	179	11	4.855	0.844	0.794	-0.062
32	VGL3008	179	8	4.138	0.754	0.758	0.005
33	VGL3235	179	8	4.834	0.793	0.793	-0.000

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	179	11	3.804	0.687	0.737	0.068
2	DLA I-4ACA	179	7	3.219	0.670	0.689	0.028
3	DLA I-4BCT	179	6	2.170	0.564	0.539	-0.047
4	DLA1131	179	9	3.277	0.693	0.695	0.003
5	5ACA	179	6	3.243	0.682	0.692	0.015
6	5ACT	179	5	3.340	0.665	0.701	0.051
7	5BCA	179	7	2.823	0.587	0.646	0.092

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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