Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Aug 9, 2020

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=114)
1007	380 372 281 182	0.004
1054	382 379 277 184	0.360
1081	395 379 289 178	0.009
1091	381 371 277 181	0.228
1109	381 379 291 186	0.022
1133	378 365 287 172	0.009
1160	386 369 289 176	0.013
1191	388 373 260 186	0.224
1192	376 373 281 182	0.004
1193	382 383 277 184	0.004
1194	385 369 291 178	0.013
1195	388 373 289 181	0.018
1196	390 372 291 180	0.022
1197	390 373 289 186	0.009
1198	392 371 277 184	0.061

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=114)
2001	343 324 284	0.009
2006	339 325 280	0.004
2015	339 327 280	0.061
2018	339 324 284	0.215
2032	339 323 280	0.009
2067	343 322 284	0.219
2083	339 324 282	0.009
2097	343 327 276	0.013
2098	343 323 282	0.013
2105	341 325 276	0.022
2106	341 325 286	0.368
2107	343 322 286	0.004
2108	343 324 294	0.018
2109	345 322 276	0.022
2110	347 325 268	0.009
2111	351 324 276	0.004

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=114)
1	AHT121	90	0.004
		92	0.061
		96	0.004
		100	0.259
		102	0.259
		104	0.408
		106	0.004
2	AHT137	131	0.123
		133	0.206
		141	0.092
		145	0.136
		149	0.114
		151	0.118
		153	0.211
3	AHTH130	111	0.009
		119	0.009
		121	0.829
		125	0.009
		129	0.004
		131	0.013
		133	0.044
		135	0.083
4	AHTh171-A	219	0.825
		221	0.004
		225	0.018
		227	0.127
		229	0.009
		233	0.018
5	AHTh260	236	0.114
		242	0.035
		244	0.575
		246	0.145
		248	0.048
		252	0.083
6	AHTk211	87	0.268
		89	0.189
		91	0.333
		93	0.022
		95	0.189
7	AHTk253	282	0.110
		286	0.132
		288	0.307
		290	0.303
		292	0.088
		294	0.061
8	C22.279	116	0.053
		118	0.048
		120	0.241
		122	0.009
		124	0.311
		126	0.127
		130	0.101
		132	0.110
9	FH2001	124	0.022
		132	0.105
		140	0.083
		144	0.329
		148	0.004
		152	0.162
		154	0.289
		156	0.004
10	FH2054	152	0.018
		156	0.105
		160	0.496
		164	0.171
		168	0.083
		172	0.083
		176	0.044
11	FH2848	230	0.022
		232	0.039
		234	0.004
		238	0.298
		242	0.636
12	INRA21	95	0.136
		97	0.789
		99	0.022
		101	0.053
13	INU005	106	0.285
		124	0.439
		126	0.066
		130	0.114
		132	0.096
14	INU030	142	0.035
		144	0.421
		146	0.022
		148	0.039
		150	0.447
		152	0.035
15	INU055	210	0.368
		212	0.268
		214	0.136
		216	0.158
		220	0.057
		222	0.013
16	LEI004	85	0.351
		95	0.513
		97	0.136
17	REN105L03	227	0.114
		229	0.101
		231	0.018
		233	0.018
		235	0.053
		237	0.610
		239	0.075
		241	0.013
18	REN162C04	202	0.096
		204	0.026
		206	0.452
		208	0.004
		210	0.346
		212	0.075
19	REN169D01	202	0.342
		210	0.075
		212	0.193
		216	0.259
		218	0.132
20	REN169O18	162	0.031
		164	0.456
		166	0.149
		168	0.241
		170	0.123
21	REN247M23	268	0.241
		270	0.539
		272	0.140
		276	0.009
		278	0.070
22	REN54P11	226	0.018
		228	0.175
		230	0.066
		232	0.079
		236	0.022
		238	0.167
		240	0.268
		242	0.206
23	REN64E19	139	0.004
		141	0.009
		145	0.149
		147	0.053
		149	0.351
		151	0.162
		153	0.105
		155	0.136
		157	0.031
24	VGL0760	13	0.539
		14	0.202
		15	0.018
		16	0.013
		17	0.140
		19	0.013
		21.2	0.044
		22.2	0.013
		23.2	0.013
		24.2	0.004
25	VGL0910	16.1	0.228
		17.1	0.013
		18.1	0.215
		19.1	0.496
		20.1	0.031
		21.1	0.018
26	VGL1063	10	0.013
		12	0.018
		13	0.035
		14	0.715
		15	0.075
		16	0.035
		17	0.009
		18	0.092
		19	0.009
27	VGL1165	15	0.009
		18	0.022
		21	0.075
		26	0.070
		27	0.096
		28	0.154
		30	0.101
		31	0.461
		32	0.013
28	VGL1828	14	0.031
		15	0.307
		16	0.035
		18	0.026
		19	0.154
		20	0.035
		20.3	0.018
		21	0.294
		22	0.096
		23	0.004
29	VGL2009	9	0.035
		11	0.009
		12	0.123
		13	0.583
		14	0.140
		15	0.105
		16	0.004
30	VGL2409	13	0.009
		14	0.004
		14.3	0.013
		15	0.215
		16	0.377
		17	0.083
		18	0.241
		19	0.057
31	VGL2918	12	0.039
		13	0.145
		14	0.250
		15	0.048
		16	0.009
		17.3	0.022
		18.3	0.075
		19.3	0.342
		20.3	0.004
		21.3	0.009
		22.3	0.057
32	VGL3008	12	0.211
		14	0.162
		15	0.110
		16	0.009
		17	0.048
		18	0.395
		19	0.026
		20	0.039
33	VGL3235	12	0.259
		13	0.268
		14	0.118
		15	0.031
		16	0.004
		17	0.215
		18	0.070
		19	0.035

Standard genetic assessment based on 33 autosomal STR loci

		N	Na	Ne	Ho	He	F
Shiba Inu	Mean	114	6.939	3.452	0.664	0.667	0.004
	SE		0.318	0.208	0.025	0.024	0.008

Standard genetic assessment based on 7 STRs in the DLA region

		N	Na	Ne	Ho	He	F
Shiba Inu	Mean	114	7.143	3.134	0.645	0.670	0.035
	SE		0.683	0.194	0.021	0.025	0.015

Standard genetic assessment for individual STR loci

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	114	7	3.288	0.667	0.696	0.042
2	AHT137	114	7	6.415	0.833	0.844	0.013
3	AHTH130	114	8	1.436	0.281	0.304	0.075
4	AHTh171-A	114	6	1.435	0.325	0.303	-0.070
5	AHTh260	114	6	2.670	0.596	0.625	0.046
6	AHTk211	114	5	3.932	0.789	0.746	-0.059
7	AHTk253	114	6	4.412	0.789	0.773	-0.021
8	C22.279	114	8	5.032	0.825	0.801	-0.029
9	FH2001	114	8	4.222	0.772	0.763	-0.012
10	FH2054	114	7	3.310	0.667	0.698	0.045
11	FH2848	114	5	2.018	0.509	0.505	-0.008
12	INRA21	114	4	1.550	0.368	0.355	-0.038
13	INU005	114	5	3.330	0.711	0.700	-0.015
14	INU030	114	6	2.618	0.667	0.618	-0.079
15	INU055	114	6	3.935	0.746	0.746	0.000
16	LEI004	114	3	2.470	0.579	0.595	0.027
17	REN105L03	114	8	2.475	0.588	0.596	0.014
18	REN162C04	114	6	2.944	0.649	0.660	0.017
19	REN169D01	114	5	4.096	0.789	0.756	-0.044
20	REN169O18	114	5	3.284	0.658	0.695	0.054
21	REN247M23	114	5	2.674	0.561	0.626	0.103
22	REN54P11	114	8	5.435	0.781	0.816	0.043
23	REN64E19	114	9	4.877	0.842	0.795	-0.059
24	VGL0760	114	10	2.822	0.623	0.646	0.035
25	VGL0910	114	6	2.896	0.675	0.655	-0.032
26	VGL1063	114	9	1.893	0.456	0.472	0.033
27	VGL1165	114	9	3.754	0.754	0.734	-0.028
28	VGL1828	114	10	4.589	0.719	0.782	0.080
29	VGL2009	114	7	2.581	0.570	0.613	0.069
30	VGL2409	114	8	3.889	0.754	0.743	-0.015
31	VGL2918	114	11	4.677	0.825	0.786	-0.049
32	VGL3008	114	8	4.113	0.754	0.757	0.003
33	VGL3235	114	8	4.857	0.789	0.794	0.006

Standard genetic assessment for 7 STRs in the DLA region

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	114	11	3.869	0.693	0.742	0.065
2	DLA I-4ACA	114	7	3.307	0.667	0.698	0.044
3	DLA I-4BCT	114	6	2.071	0.535	0.517	-0.035
4	DLA1131	114	8	3.254	0.702	0.693	-0.013
5	5ACA	114	6	3.142	0.658	0.682	0.035
6	5ACT	114	5	3.403	0.667	0.706	0.056
7	5BCA	114	7	2.895	0.596	0.655	0.089

Veterinary Genetics Laboratory

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Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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