Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jul 8, 2025

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=190)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.358
1081	395 379 289 178	0.005
1091	381 371 277 181	0.216
1109	381 379 291 186	0.026
1133	378 365 287 172	0.005
1160	386 369 289 176	0.011
1191	388 373 260 186	0.239
1192	376 373 281 182	0.018
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.021
1196	390 372 291 180	0.016
1197	390 373 289 186	0.016
1198	392 371 277 184	0.050
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=190)
2001	343 324 284	0.016
2006	339 325 280	0.003
2015	339 327 280	0.050
2016	339 323 284	0.003
2018	339 324 284	0.234
2032	339 323 280	0.005
2067	343 322 284	0.208
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.016
2106	341 325 286	0.363
2107	343 322 286	0.003
2108	343 324 294	0.021
2109	345 322 276	0.026
2110	347 325 268	0.005
2111	351 324 276	0.018
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=190)
1	AHT121	90	0.003
		92	0.068
		96	0.003
		100	0.258
		102	0.234
		104	0.432
		106	0.003
2	AHT137	131	0.113
		133	0.208
		135	0.003
		137	0.024
		141	0.087
		145	0.095
		149	0.126
		151	0.116
		153	0.229
3	AHTH130	111	0.011
		115	0.003
		119	0.005
		121	0.837
		125	0.016
		129	0.003
		131	0.008
		133	0.034
		135	0.084
4	AHTh171-A	219	0.826
		221	0.003
		225	0.013
		227	0.137
		229	0.008
		233	0.013
5	AHTh260	236	0.095
		242	0.037
		244	0.563
		246	0.174
		248	0.061
		252	0.071
6	AHTk211	87	0.253
		89	0.182
		91	0.368
		93	0.021
		95	0.176
7	AHTk253	282	0.139
		286	0.132
		288	0.282
		290	0.289
		292	0.111
		294	0.047
8	C22.279	116	0.047
		118	0.050
		120	0.224
		122	0.005
		124	0.329
		126	0.108
		130	0.113
		132	0.124
9	FH2001	124	0.037
		132	0.100
		140	0.071
		144	0.366
		148	0.008
		152	0.137
		154	0.279
		156	0.003
10	FH2054	152	0.013
		156	0.118
		160	0.458
		164	0.171
		168	0.124
		172	0.071
		176	0.045
11	FH2848	230	0.016
		232	0.034
		234	0.008
		238	0.337
		242	0.603
		246	0.003
12	INRA21	95	0.134
		97	0.789
		99	0.018
		101	0.058
13	INU005	106	0.284
		124	0.450
		126	0.058
		130	0.121
		132	0.087
14	INU030	142	0.032
		144	0.445
		146	0.021
		148	0.045
		150	0.429
		152	0.029
15	INU055	210	0.408
		212	0.271
		214	0.134
		216	0.134
		220	0.045
		222	0.008
16	LEI004	85	0.387
		95	0.474
		97	0.139
17	REN105L03	227	0.092
		229	0.132
		231	0.024
		233	0.016
		235	0.063
		237	0.600
		239	0.061
		241	0.013
18	REN162C04	202	0.079
		204	0.016
		206	0.461
		208	0.003
		210	0.358
		212	0.084
19	REN169D01	202	0.321
		210	0.074
		212	0.200
		216	0.287
		218	0.118
20	REN169O18	162	0.029
		164	0.482
		166	0.155
		168	0.213
		170	0.118
		172	0.003
21	REN247M23	268	0.239
		270	0.537
		272	0.124
		276	0.011
		278	0.089
22	REN54P11	226	0.011
		228	0.166
		230	0.079
		232	0.087
		236	0.016
		238	0.203
		240	0.242
		242	0.197
23	REN64E19	139	0.003
		141	0.008
		145	0.166
		147	0.058
		149	0.358
		151	0.147
		153	0.100
		155	0.132
		157	0.029
24	VGL0760	13	0.574
		14	0.182
		15	0.021
		16	0.029
		17	0.111
		19	0.008
		21.2	0.050
		22.2	0.011
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.274
		17.1	0.008
		18.1	0.184
		19.1	0.455
		20.1	0.058
		21.1	0.011
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.039
		14	0.724
		15	0.089
		16	0.026
		17	0.008
		18	0.084
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.021
		21	0.074
		26	0.066
		27	0.097
		28	0.124
		30	0.132
		31	0.466
		32	0.011
28	VGL1828	14	0.029
		15	0.295
		16	0.050
		18	0.026
		19	0.147
		20	0.029
		20.3	0.026
		21	0.297
		22	0.097
		23	0.003
29	VGL2009	9	0.034
		11	0.005
		12	0.137
		13	0.589
		14	0.150
		15	0.082
		16	0.003
30	VGL2409	13	0.008
		13.3	0.032
		14	0.005
		14.3	0.013
		15	0.195
		16	0.366
		17	0.092
		18	0.232
		19	0.058
31	VGL2918	12	0.061
		13	0.150
		14	0.200
		15	0.029
		16	0.008
		17.3	0.021
		18.3	0.068
		19.3	0.361
		20.3	0.008
		21.3	0.013
		22.3	0.082
32	VGL3008	12	0.197
		14	0.213
		15	0.084
		16	0.016
		17	0.055
		18	0.376
		19	0.024
		20	0.034
33	VGL3235	12	0.250
		13	0.292
		14	0.100
		15	0.029
		16	0.011
		17	0.205
		18	0.076
		19	0.037

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	190	7.242	3.458	0.664	0.666	0.006
	SE		0.335	0.210	0.026	0.025	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	190	7.286	3.123	0.661	0.671	0.013
	SE		0.720	0.178	0.018	0.022	0.015

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	190	7	3.202	0.679	0.688	0.013
2	AHT137	190	9	6.456	0.816	0.845	0.035
3	AHTH130	190	9	1.410	0.263	0.291	0.096
4	AHTh171-A	190	6	1.425	0.305	0.298	-0.024
5	AHTh260	190	6	2.730	0.632	0.634	0.003
6	AHTk211	190	5	3.787	0.747	0.736	-0.016
7	AHTk253	190	6	4.666	0.768	0.786	0.022
8	C22.279	190	8	4.932	0.800	0.797	-0.003
9	FH2001	190	8	4.052	0.779	0.753	-0.034
10	FH2054	190	7	3.630	0.684	0.725	0.056
11	FH2848	190	6	2.092	0.495	0.522	0.052
12	INRA21	190	4	1.550	0.353	0.355	0.007
13	INU005	190	5	3.238	0.705	0.691	-0.020
14	INU030	190	6	2.590	0.637	0.614	-0.037
15	INU055	190	6	3.598	0.716	0.722	0.009
16	LEI004	190	3	2.541	0.595	0.607	0.019
17	REN105L03	190	8	2.535	0.605	0.606	0.001
18	REN162C04	190	6	2.827	0.668	0.646	-0.034
19	REN169D01	190	5	4.085	0.784	0.755	-0.038
20	REN169O18	190	6	3.161	0.658	0.684	0.038
21	REN247M23	190	5	2.710	0.574	0.631	0.091
22	REN54P11	190	8	5.548	0.795	0.820	0.031
23	REN64E19	190	9	4.788	0.842	0.791	-0.064
24	VGL0760	190	10	2.642	0.616	0.622	0.009
25	VGL0910	190	8	3.128	0.674	0.680	0.010
26	VGL1063	190	10	1.847	0.447	0.459	0.024
27	VGL1165	190	10	3.712	0.758	0.731	-0.037
28	VGL1828	190	10	4.716	0.763	0.788	0.031
29	VGL2009	190	7	2.522	0.600	0.603	0.006
30	VGL2409	190	9	4.194	0.742	0.762	0.026
31	VGL2918	190	11	4.783	0.837	0.791	-0.058
32	VGL3008	190	8	4.199	0.768	0.762	-0.009
33	VGL3235	190	8	4.806	0.795	0.792	-0.004

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	190	11	3.810	0.700	0.738	0.051
2	DLA I-4ACA	190	7	3.210	0.674	0.688	0.022
3	DLA I-4BCT	190	6	2.180	0.574	0.541	-0.060
4	DLA1131	190	9	3.264	0.705	0.694	-0.017
5	5ACA	190	6	3.244	0.695	0.692	-0.004
6	5ACT	190	5	3.346	0.679	0.701	0.032
7	5BCA	190	7	2.804	0.600	0.643	0.067

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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