Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Nov 20, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=178)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.357
1081	395 379 289 178	0.006
1091	381 371 277 181	0.222
1109	381 379 291 186	0.028
1133	378 365 287 172	0.006
1160	386 369 289 176	0.011
1191	388 373 260 186	0.230
1192	376 373 281 182	0.017
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.022
1196	390 372 291 180	0.017
1197	390 373 289 186	0.017
1198	392 371 277 184	0.048
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=178)
2001	343 324 284	0.017
2006	339 325 280	0.003
2015	339 327 280	0.048
2016	339 323 284	0.003
2018	339 324 284	0.225
2032	339 323 280	0.006
2067	343 322 284	0.213
2071	339 322 286	0.003
2083	339 324 282	0.006
2097	343 327 276	0.008
2098	343 323 282	0.011
2105	341 325 276	0.017
2106	341 325 286	0.362
2107	343 322 286	0.003
2108	343 324 294	0.022
2109	345 322 276	0.028
2110	347 325 268	0.006
2111	351 324 276	0.017
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=178)
1	AHT121	90	0.003
		92	0.070
		96	0.003
		100	0.256
		102	0.233
		104	0.433
		106	0.003
2	AHT137	131	0.121
		133	0.199
		135	0.003
		137	0.025
		141	0.090
		145	0.096
		149	0.129
		151	0.110
		153	0.228
3	AHTH130	111	0.011
		115	0.003
		119	0.006
		121	0.837
		125	0.011
		129	0.003
		131	0.008
		133	0.037
		135	0.084
4	AHTh171-A	219	0.831
		221	0.003
		225	0.011
		227	0.132
		229	0.008
		233	0.014
5	AHTh260	236	0.101
		242	0.031
		244	0.556
		246	0.174
		248	0.065
		252	0.073
6	AHTk211	87	0.258
		89	0.185
		91	0.357
		93	0.020
		95	0.180
7	AHTk253	282	0.138
		286	0.132
		288	0.284
		290	0.289
		292	0.107
		294	0.051
8	C22.279	116	0.051
		118	0.045
		120	0.213
		122	0.006
		124	0.334
		126	0.112
		130	0.118
		132	0.121
9	FH2001	124	0.037
		132	0.096
		140	0.076
		144	0.360
		148	0.006
		152	0.140
		154	0.284
		156	0.003
10	FH2054	152	0.014
		156	0.115
		160	0.466
		164	0.163
		168	0.121
		172	0.076
		176	0.045
11	FH2848	230	0.017
		232	0.031
		234	0.008
		238	0.340
		242	0.601
		246	0.003
12	INRA21	95	0.132
		97	0.789
		99	0.020
		101	0.059
13	INU005	106	0.281
		124	0.441
		126	0.062
		130	0.126
		132	0.090
14	INU030	142	0.034
		144	0.449
		146	0.022
		148	0.045
		150	0.421
		152	0.028
15	INU055	210	0.393
		212	0.278
		214	0.138
		216	0.135
		220	0.048
		222	0.008
16	LEI004	85	0.371
		95	0.492
		97	0.138
17	REN105L03	227	0.096
		229	0.124
		231	0.025
		233	0.014
		235	0.065
		237	0.598
		239	0.065
		241	0.014
18	REN162C04	202	0.081
		204	0.017
		206	0.455
		208	0.003
		210	0.357
		212	0.087
19	REN169D01	202	0.329
		210	0.073
		212	0.191
		216	0.284
		218	0.124
20	REN169O18	162	0.031
		164	0.466
		166	0.160
		168	0.213
		170	0.126
		172	0.003
21	REN247M23	268	0.250
		270	0.522
		272	0.129
		276	0.008
		278	0.090
22	REN54P11	226	0.011
		228	0.169
		230	0.076
		232	0.081
		236	0.017
		238	0.205
		240	0.236
		242	0.205
23	REN64E19	139	0.003
		141	0.008
		145	0.160
		147	0.053
		149	0.360
		151	0.154
		153	0.101
		155	0.129
		157	0.031
24	VGL0760	13	0.581
		14	0.171
		15	0.020
		16	0.025
		17	0.118
		19	0.008
		21.2	0.053
		22.2	0.008
		23.2	0.011
		24.2	0.003
25	VGL0910	15.1	0.003
		16.1	0.270
		17.1	0.008
		18.1	0.188
		19.1	0.455
		20.1	0.059
		21.1	0.011
		22.1	0.006
26	VGL1063	10	0.008
		12	0.014
		13	0.031
		14	0.730
		15	0.090
		16	0.028
		17	0.008
		18	0.081
		19	0.006
		20	0.003
27	VGL1165	15	0.006
		16	0.003
		18	0.020
		21	0.079
		26	0.065
		27	0.104
		28	0.132
		30	0.121
		31	0.461
		32	0.011
28	VGL1828	14	0.031
		15	0.284
		16	0.053
		18	0.025
		19	0.152
		20	0.031
		20.3	0.025
		21	0.295
		22	0.101
		23	0.003
29	VGL2009	9	0.034
		11	0.006
		12	0.132
		13	0.587
		14	0.152
		15	0.087
		16	0.003
30	VGL2409	13	0.008
		13.3	0.031
		14	0.003
		14.3	0.014
		15	0.194
		16	0.365
		17	0.093
		18	0.236
		19	0.056
31	VGL2918	12	0.062
		13	0.149
		14	0.205
		15	0.031
		16	0.006
		17.3	0.022
		18.3	0.067
		19.3	0.357
		20.3	0.008
		21.3	0.014
		22.3	0.079
32	VGL3008	12	0.191
		14	0.202
		15	0.090
		16	0.014
		17	0.056
		18	0.390
		19	0.020
		20	0.037
33	VGL3235	12	0.242
		13	0.289
		14	0.101
		15	0.031
		16	0.008
		17	0.213
		18	0.076
		19	0.039

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	178	7.242	3.474	0.664	0.667	0.008
	SE		0.335	0.212	0.026	0.025	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	178	7.286	3.135	0.653	0.672	0.026
	SE		0.720	0.179	0.018	0.022	0.016

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	178	7	3.207	0.674	0.688	0.020
2	AHT137	178	9	6.550	0.831	0.847	0.019
3	AHTH130	178	9	1.409	0.258	0.290	0.110
4	AHTh171-A	178	6	1.410	0.298	0.291	-0.024
5	AHTh260	178	6	2.775	0.635	0.640	0.008
6	AHTk211	178	5	3.830	0.758	0.739	-0.026
7	AHTk253	178	6	4.661	0.775	0.785	0.013
8	C22.279	178	8	4.925	0.798	0.797	-0.001
9	FH2001	178	8	4.069	0.775	0.754	-0.028
10	FH2054	178	7	3.574	0.685	0.720	0.048
11	FH2848	178	6	2.091	0.489	0.522	0.063
12	INRA21	178	4	1.552	0.348	0.356	0.021
13	INU005	178	5	3.319	0.719	0.699	-0.029
14	INU030	178	6	2.604	0.635	0.616	-0.031
15	INU055	178	6	3.684	0.730	0.729	-0.002
16	LEI004	178	3	2.512	0.596	0.602	0.011
17	REN105L03	178	8	2.553	0.596	0.608	0.021
18	REN162C04	178	6	2.867	0.663	0.651	-0.018
19	REN169D01	178	5	4.072	0.781	0.754	-0.035
20	REN169O18	178	6	3.272	0.669	0.694	0.037
21	REN247M23	178	5	2.775	0.579	0.640	0.095
22	REN54P11	178	8	5.526	0.792	0.819	0.033
23	REN64E19	178	9	4.771	0.837	0.790	-0.059
24	VGL0760	178	10	2.594	0.607	0.614	0.013
25	VGL0910	178	8	3.135	0.685	0.681	-0.006
26	VGL1063	178	10	1.817	0.444	0.450	0.013
27	VGL1165	178	10	3.760	0.764	0.734	-0.041
28	VGL1828	178	10	4.837	0.758	0.793	0.044
29	VGL2009	178	7	2.539	0.596	0.606	0.018
30	VGL2409	178	9	4.174	0.736	0.760	0.032
31	VGL2918	178	11	4.813	0.843	0.792	-0.064
32	VGL3008	178	8	4.115	0.753	0.757	0.006
33	VGL3235	178	8	4.850	0.792	0.794	0.002

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	178	11	3.821	0.691	0.738	0.064
2	DLA I-4ACA	178	7	3.229	0.674	0.690	0.023
3	DLA I-4BCT	178	6	2.179	0.567	0.541	-0.049
4	DLA1131	178	9	3.290	0.697	0.696	-0.001
5	5ACA	178	6	3.251	0.685	0.692	0.010
6	5ACT	178	5	3.351	0.669	0.702	0.047
7	5BCA	178	7	2.824	0.590	0.646	0.087

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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