Updated May 5, 2024
DLA Class I Haplotype Frequencies
DLA1 # | STR types | Llewellin Setter (n=153) |
---|---|---|
1008 | 386 373 289 182 | 0.049 |
1016 | 382 371 277 178 | 0.029 |
1026 | 390 369 289 186 | 0.052 |
1028 | 376 369 291 186 | 0.003 |
1030 | 380 373 293 178 | 0.020 |
1045 | 376 371 277 186 | 0.003 |
1054 | 382 379 277 184 | 0.092 |
1077 | 376 369 291 178 | 0.605 |
1134 | 384 365 291 178 | 0.118 |
1142 | 376 379 277 180 | 0.016 |
1201 | 382 381 277 181 | 0.003 |
1212 | 380 373 293 180 | 0.003 |
1294 | 386 365 287 183 | 0.003 |
1295 | 389 369 289 176 | 0.003 |
DLA Class II Haplotype Frequencies
DLA2 # | STR types | Llewellin Setter (n=153) |
---|---|---|
2002 | 343 327 280 | 0.029 |
2005 | 339 322 280 | 0.775 |
2012 | 345 322 280 | 0.056 |
2015 | 339 327 280 | 0.003 |
2018 | 339 324 284 | 0.016 |
2022 | 339 327 282 | 0.092 |
2023 | 341 323 282 | 0.013 |
2024 | 343 323 280 | 0.003 |
2035 | 341 323 280 | 0.003 |
2104 | 341 323 284 | 0.007 |
2138 | 343 324 288 | 0.003 |
Allele Frequencies
# | Locus Name | Allele | Llewellin Setter (n=153) |
---|---|---|---|
1 | AHT121 | 80 | 0.078 |
96 | 0.327 | ||
98 | 0.042 | ||
100 | 0.033 | ||
102 | 0.304 | ||
106 | 0.121 | ||
108 | 0.003 | ||
112 | 0.026 | ||
114 | 0.065 | ||
2 | AHT137 | 131 | 0.020 |
137 | 0.046 | ||
145 | 0.065 | ||
147 | 0.467 | ||
149 | 0.389 | ||
151 | 0.013 | ||
3 | AHTH130 | 119 | 0.275 |
121 | 0.422 | ||
123 | 0.007 | ||
127 | 0.275 | ||
129 | 0.013 | ||
131 | 0.010 | ||
4 | AHTh171-A | 217 | 0.013 |
219 | 0.480 | ||
225 | 0.114 | ||
229 | 0.003 | ||
233 | 0.150 | ||
235 | 0.075 | ||
239 | 0.003 | ||
241 | 0.160 | ||
5 | AHTh260 | 240 | 0.098 |
244 | 0.036 | ||
246 | 0.340 | ||
248 | 0.523 | ||
254 | 0.003 | ||
6 | AHTk211 | 87 | 0.154 |
89 | 0.252 | ||
91 | 0.176 | ||
93 | 0.033 | ||
95 | 0.386 | ||
7 | AHTk253 | 284 | 0.369 |
286 | 0.157 | ||
288 | 0.183 | ||
290 | 0.111 | ||
292 | 0.180 | ||
8 | C22.279 | 116 | 0.660 |
118 | 0.013 | ||
124 | 0.016 | ||
126 | 0.232 | ||
130 | 0.078 | ||
9 | FH2001 | 124 | 0.137 |
128 | 0.065 | ||
132 | 0.255 | ||
136 | 0.062 | ||
140 | 0.111 | ||
144 | 0.176 | ||
148 | 0.186 | ||
152 | 0.007 | ||
10 | FH2054 | 148 | 0.059 |
152 | 0.193 | ||
156 | 0.085 | ||
160 | 0.144 | ||
164 | 0.016 | ||
168 | 0.042 | ||
172 | 0.108 | ||
176 | 0.265 | ||
180 | 0.072 | ||
188 | 0.016 | ||
11 | FH2848 | 238 | 0.121 |
240 | 0.448 | ||
242 | 0.408 | ||
244 | 0.020 | ||
246 | 0.003 | ||
12 | INRA21 | 95 | 0.007 |
97 | 0.663 | ||
101 | 0.078 | ||
103 | 0.180 | ||
105 | 0.072 | ||
13 | INU005 | 110 | 0.059 |
124 | 0.095 | ||
126 | 0.209 | ||
128 | 0.637 | ||
14 | INU030 | 144 | 0.637 |
146 | 0.075 | ||
148 | 0.072 | ||
150 | 0.180 | ||
152 | 0.033 | ||
156 | 0.003 | ||
15 | INU055 | 210 | 0.458 |
212 | 0.176 | ||
214 | 0.366 | ||
16 | LEI004 | 85 | 0.660 |
95 | 0.314 | ||
97 | 0.003 | ||
105 | 0.023 | ||
17 | REN105L03 | 227 | 0.007 |
231 | 0.085 | ||
233 | 0.118 | ||
235 | 0.376 | ||
241 | 0.415 | ||
18 | REN162C04 | 198 | 0.007 |
202 | 0.840 | ||
204 | 0.049 | ||
206 | 0.105 | ||
19 | REN169D01 | 202 | 0.588 |
206 | 0.036 | ||
210 | 0.023 | ||
212 | 0.121 | ||
216 | 0.085 | ||
218 | 0.114 | ||
220 | 0.023 | ||
224 | 0.010 | ||
20 | REN169O18 | 156 | 0.003 |
160 | 0.010 | ||
162 | 0.023 | ||
164 | 0.284 | ||
166 | 0.016 | ||
168 | 0.605 | ||
170 | 0.059 | ||
21 | REN247M23 | 268 | 0.248 |
270 | 0.297 | ||
272 | 0.448 | ||
274 | 0.007 | ||
22 | REN54P11 | 222 | 0.297 |
226 | 0.314 | ||
232 | 0.239 | ||
234 | 0.147 | ||
238 | 0.003 | ||
23 | REN64E19 | 145 | 0.330 |
147 | 0.239 | ||
149 | 0.007 | ||
153 | 0.425 | ||
24 | VGL0760 | 12 | 0.007 |
18.2 | 0.324 | ||
19.2 | 0.167 | ||
20.2 | 0.333 | ||
21.2 | 0.036 | ||
22.2 | 0.095 | ||
23.2 | 0.033 | ||
24.2 | 0.007 | ||
25 | VGL0910 | 13 | 0.029 |
14 | 0.245 | ||
15 | 0.111 | ||
16 | 0.007 | ||
17.1 | 0.016 | ||
18.1 | 0.023 | ||
19.1 | 0.098 | ||
20.1 | 0.033 | ||
21.1 | 0.261 | ||
22.1 | 0.131 | ||
23.1 | 0.007 | ||
24.1 | 0.039 | ||
26 | VGL1063 | 8 | 0.173 |
9 | 0.085 | ||
13 | 0.415 | ||
14 | 0.105 | ||
15 | 0.016 | ||
18 | 0.069 | ||
19 | 0.137 | ||
27 | VGL1165 | 14 | 0.088 |
16 | 0.007 | ||
18 | 0.013 | ||
19 | 0.039 | ||
20 | 0.007 | ||
21 | 0.163 | ||
22 | 0.154 | ||
23 | 0.307 | ||
24 | 0.007 | ||
27 | 0.003 | ||
28 | 0.003 | ||
30 | 0.196 | ||
31 | 0.013 | ||
28 | VGL1828 | 14 | 0.042 |
15 | 0.003 | ||
16 | 0.118 | ||
18 | 0.003 | ||
19 | 0.592 | ||
20 | 0.167 | ||
21 | 0.003 | ||
22 | 0.072 | ||
29 | VGL2009 | 9 | 0.003 |
11 | 0.118 | ||
13 | 0.154 | ||
14 | 0.722 | ||
15 | 0.003 | ||
30 | VGL2409 | 14 | 0.003 |
15 | 0.036 | ||
16 | 0.405 | ||
17 | 0.448 | ||
18 | 0.078 | ||
19 | 0.029 | ||
31 | VGL2918 | 12 | 0.003 |
13 | 0.533 | ||
14 | 0.219 | ||
15 | 0.023 | ||
16 | 0.013 | ||
17.3 | 0.007 | ||
18.3 | 0.020 | ||
19.3 | 0.183 | ||
32 | VGL3008 | 14 | 0.376 |
15 | 0.098 | ||
16 | 0.016 | ||
18 | 0.255 | ||
18.2 | 0.003 | ||
19 | 0.154 | ||
20 | 0.092 | ||
21 | 0.007 | ||
33 | VGL3235 | 12 | 0.310 |
13 | 0.333 | ||
14 | 0.157 | ||
15 | 0.095 | ||
16 | 0.003 | ||
17 | 0.065 | ||
18 | 0.033 | ||
19 | 0.003 |
Standard genetic assessment based on 33 autosomal STR loci
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 153 | 6.485 | 3.249 | 0.640 | 0.650 | 0.014 | |
SE | 0.400 | 0.213 | 0.022 | 0.022 | 0.010 |
Standard genetic assessment based on 7 STRs in the DLA region
N | Na | Ne | Ho | He | F | ||
---|---|---|---|---|---|---|---|
Mean | 153 | 5.429 | 1.695 | 0.351 | 0.381 | 0.074 | |
SE | 0.566 | 0.143 | 0.044 | 0.049 | 0.014 |
Standard genetic assessment for individual STR loci
Llewellin Setter
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | AHT121 | 153 | 9 | 4.390 | 0.739 | 0.772 | 0.044 |
2 | AHT137 | 153 | 6 | 2.656 | 0.582 | 0.623 | 0.067 |
3 | AHTH130 | 153 | 6 | 3.042 | 0.693 | 0.671 | -0.032 |
4 | AHTh171-A | 153 | 8 | 3.356 | 0.693 | 0.702 | 0.013 |
5 | AHTh260 | 153 | 5 | 2.501 | 0.627 | 0.600 | -0.045 |
6 | AHTk211 | 153 | 5 | 3.734 | 0.719 | 0.732 | 0.018 |
7 | AHTk253 | 153 | 5 | 4.182 | 0.784 | 0.761 | -0.031 |
8 | C22.279 | 153 | 5 | 2.015 | 0.542 | 0.504 | -0.077 |
9 | FH2001 | 153 | 8 | 5.876 | 0.771 | 0.830 | 0.071 |
10 | FH2054 | 153 | 10 | 6.340 | 0.863 | 0.842 | -0.024 |
11 | FH2848 | 153 | 5 | 2.616 | 0.601 | 0.618 | 0.026 |
12 | INRA21 | 153 | 5 | 2.067 | 0.484 | 0.516 | 0.063 |
13 | INU005 | 153 | 4 | 2.163 | 0.542 | 0.538 | -0.009 |
14 | INU030 | 153 | 6 | 2.221 | 0.536 | 0.550 | 0.025 |
15 | INU055 | 153 | 3 | 2.671 | 0.673 | 0.626 | -0.076 |
16 | LEI004 | 153 | 4 | 1.870 | 0.405 | 0.465 | 0.129 |
17 | REN105L03 | 153 | 5 | 2.989 | 0.614 | 0.665 | 0.077 |
18 | REN162C04 | 153 | 4 | 1.391 | 0.281 | 0.281 | 0.001 |
19 | REN169D01 | 153 | 8 | 2.608 | 0.582 | 0.617 | 0.057 |
20 | REN169O18 | 153 | 7 | 2.219 | 0.549 | 0.549 | 0.001 |
21 | REN247M23 | 153 | 4 | 2.852 | 0.614 | 0.649 | 0.054 |
22 | REN54P11 | 153 | 5 | 3.768 | 0.660 | 0.735 | 0.101 |
23 | REN64E19 | 153 | 4 | 2.887 | 0.621 | 0.654 | 0.050 |
24 | VGL0760 | 153 | 8 | 3.922 | 0.765 | 0.745 | -0.026 |
25 | VGL0910 | 153 | 12 | 5.820 | 0.791 | 0.828 | 0.045 |
26 | VGL1063 | 153 | 7 | 4.095 | 0.732 | 0.756 | 0.031 |
27 | VGL1165 | 153 | 13 | 5.184 | 0.837 | 0.807 | -0.037 |
28 | VGL1828 | 153 | 8 | 2.509 | 0.556 | 0.601 | 0.076 |
29 | VGL2009 | 153 | 5 | 1.789 | 0.490 | 0.441 | -0.112 |
30 | VGL2409 | 153 | 6 | 2.681 | 0.654 | 0.627 | -0.042 |
31 | VGL2918 | 153 | 8 | 2.730 | 0.575 | 0.634 | 0.092 |
32 | VGL3008 | 153 | 8 | 4.030 | 0.771 | 0.752 | -0.026 |
33 | VGL3235 | 153 | 8 | 4.058 | 0.784 | 0.754 | -0.041 |
Standard genetic assessment for 7 STRs in the DLA region
Llewellin Setter
# | Locus | N | Na | Ne | Ho | He | F |
---|---|---|---|---|---|---|---|
1 | DLA I-3CCA | 153 | 7 | 2.331 | 0.529 | 0.571 | 0.073 |
2 | DLA I-4ACA | 153 | 6 | 2.116 | 0.477 | 0.527 | 0.095 |
3 | DLA I-4BCT | 153 | 5 | 1.791 | 0.399 | 0.442 | 0.097 |
4 | DLA1131 | 153 | 8 | 1.641 | 0.359 | 0.391 | 0.080 |
5 | 5ACA | 153 | 4 | 1.267 | 0.196 | 0.211 | 0.070 |
6 | 5ACT | 153 | 4 | 1.417 | 0.261 | 0.295 | 0.112 |
7 | 5BCA | 153 | 4 | 1.304 | 0.235 | 0.233 | -0.010 |