Statistics and Breed-wide Allele Frequency - Llewellin Setter

Updated Dec 3, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Llewellin Setter (n=154)
1008	386 373 289 182	0.052
1016	382 371 277 178	0.029
1026	390 369 289 186	0.052
1028	376 369 291 186	0.003
1030	380 373 293 178	0.019
1045	376 371 277 186	0.003
1054	382 379 277 184	0.091
1077	376 369 291 178	0.604
1134	384 365 291 178	0.117
1142	376 379 277 180	0.016
1201	382 381 277 181	0.003
1212	380 373 293 180	0.003
1294	386 365 287 183	0.003
1295	389 369 289 176	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Llewellin Setter (n=154)
2002	343 327 280	0.029
2005	339 322 280	0.776
2012	345 322 280	0.055
2015	339 327 280	0.003
2018	339 324 284	0.016
2022	339 327 282	0.091
2023	341 323 282	0.013
2024	343 323 280	0.003
2035	341 323 280	0.003
2104	341 323 284	0.006
2138	343 324 288	0.003

Allele Frequencies

#	Locus Name	Allele	Llewellin Setter (n=154)
1	AHT121	80	0.078
		96	0.325
		98	0.042
		100	0.032
		102	0.308
		106	0.120
		108	0.003
		112	0.026
		114	0.065
2	AHT137	131	0.019
		137	0.045
		145	0.065
		147	0.471
		149	0.386
		151	0.013
3	AHTH130	119	0.273
		121	0.425
		123	0.006
		127	0.273
		129	0.013
		131	0.010
4	AHTh171-A	217	0.013
		219	0.481
		225	0.114
		229	0.003
		233	0.149
		235	0.078
		239	0.003
		241	0.159
5	AHTh260	240	0.097
		244	0.036
		246	0.344
		248	0.519
		254	0.003
6	AHTk211	87	0.153
		89	0.256
		91	0.175
		93	0.032
		95	0.383
7	AHTk253	284	0.367
		286	0.156
		288	0.182
		290	0.114
		292	0.182
8	C22.279	116	0.662
		118	0.013
		124	0.016
		126	0.231
		130	0.078
9	FH2001	124	0.140
		128	0.065
		132	0.253
		136	0.062
		140	0.110
		144	0.175
		148	0.188
		152	0.006
10	FH2054	148	0.062
		152	0.192
		156	0.084
		160	0.143
		164	0.016
		168	0.042
		172	0.110
		176	0.263
		180	0.071
		188	0.016
11	FH2848	238	0.120
		240	0.445
		242	0.412
		244	0.019
		246	0.003
12	INRA21	95	0.006
		97	0.662
		101	0.081
		103	0.179
		105	0.071
13	INU005	110	0.058
		124	0.094
		126	0.208
		128	0.640
14	INU030	144	0.636
		146	0.075
		148	0.075
		150	0.179
		152	0.032
		156	0.003
15	INU055	210	0.458
		212	0.179
		214	0.364
16	LEI004	85	0.659
		95	0.315
		97	0.003
		105	0.023
17	REN105L03	227	0.006
		231	0.091
		233	0.117
		235	0.373
		241	0.412
18	REN162C04	198	0.006
		202	0.841
		204	0.049
		206	0.104
19	REN169D01	202	0.591
		206	0.036
		210	0.023
		212	0.120
		216	0.084
		218	0.114
		220	0.023
		224	0.010
20	REN169O18	156	0.003
		160	0.010
		162	0.023
		164	0.282
		166	0.016
		168	0.607
		170	0.058
21	REN247M23	268	0.247
		270	0.295
		272	0.451
		274	0.006
22	REN54P11	222	0.299
		226	0.315
		232	0.237
		234	0.146
		238	0.003
23	REN64E19	145	0.328
		147	0.237
		149	0.006
		153	0.429
24	VGL0760	12	0.006
		18.2	0.321
		19.2	0.166
		20.2	0.334
		21.2	0.036
		22.2	0.094
		23.2	0.036
		24.2	0.006
25	VGL0910	13	0.029
		14	0.244
		15	0.110
		16	0.006
		17.1	0.016
		18.1	0.023
		19.1	0.097
		20.1	0.032
		21.1	0.260
		22.1	0.136
		23.1	0.006
		24.1	0.039
26	VGL1063	8	0.175
		9	0.084
		13	0.412
		14	0.107
		15	0.016
		18	0.068
		19	0.136
27	VGL1165	14	0.088
		16	0.006
		18	0.013
		19	0.039
		20	0.006
		21	0.162
		22	0.153
		23	0.305
		24	0.006
		27	0.003
		28	0.003
		30	0.201
		31	0.013
28	VGL1828	14	0.042
		15	0.003
		16	0.117
		18	0.003
		19	0.588
		20	0.169
		21	0.003
		22	0.075
29	VGL2009	9	0.003
		11	0.117
		13	0.153
		14	0.724
		15	0.003
30	VGL2409	14	0.003
		15	0.036
		16	0.406
		17	0.448
		18	0.078
		19	0.029
31	VGL2918	12	0.003
		13	0.532
		14	0.218
		15	0.023
		16	0.013
		17.3	0.006
		18.3	0.019
		19.3	0.185
32	VGL3008	14	0.373
		15	0.097
		16	0.016
		18	0.256
		18.2	0.003
		19	0.153
		20	0.094
		21	0.006
33	VGL3235	12	0.308
		13	0.334
		14	0.159
		15	0.094
		16	0.003
		17	0.065
		18	0.032
		19	0.003

Standard genetic assessment based on 33 autosomal STR loci

Llewellin Setter

		N	Na	Ne	Ho	He	F
	Mean	154	6.485	3.252	0.639	0.650	0.015
	SE		0.400	0.214	0.022	0.022	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Llewellin Setter

		N	Na	Ne	Ho	He	F
	Mean	154	5.429	1.698	0.353	0.382	0.072
	SE		0.566	0.145	0.045	0.050	0.014

Standard genetic assessment for individual STR loci

Llewellin Setter

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	154	9	4.371	0.734	0.771	0.049
2	AHT137	154	6	2.647	0.578	0.622	0.071
3	AHTH130	154	6	3.031	0.688	0.670	-0.027
4	AHTh171-A	154	8	3.359	0.695	0.702	0.011
5	AHTh260	154	5	2.506	0.623	0.601	-0.037
6	AHTk211	154	5	3.736	0.714	0.732	0.025
7	AHTk253	154	5	4.203	0.786	0.762	-0.031
8	C22.279	154	5	2.007	0.539	0.502	-0.074
9	FH2001	154	8	5.880	0.773	0.830	0.069
10	FH2054	154	10	6.378	0.864	0.843	-0.024
11	FH2848	154	5	2.613	0.597	0.617	0.032
12	INRA21	154	5	2.073	0.487	0.518	0.059
13	INU005	154	4	2.153	0.539	0.535	-0.007
14	INU030	154	6	2.227	0.539	0.551	0.022
15	INU055	154	3	2.676	0.675	0.626	-0.078
16	LEI004	154	4	1.872	0.409	0.466	0.122
17	REN105L03	154	5	3.017	0.610	0.669	0.087
18	REN162C04	154	4	1.388	0.279	0.280	0.002
19	REN169D01	154	8	2.590	0.578	0.614	0.059
20	REN169O18	154	7	2.209	0.545	0.547	0.003
21	REN247M23	154	4	2.842	0.610	0.648	0.058
22	REN54P11	154	5	3.760	0.662	0.734	0.098
23	REN64E19	154	4	2.878	0.617	0.653	0.055
24	VGL0760	154	8	3.936	0.766	0.746	-0.027
25	VGL0910	154	12	5.837	0.786	0.829	0.052
26	VGL1063	154	7	4.117	0.734	0.757	0.031
27	VGL1165	154	13	5.182	0.831	0.807	-0.030
28	VGL1828	154	8	2.532	0.558	0.605	0.077
29	VGL2009	154	5	1.782	0.487	0.439	-0.110
30	VGL2409	154	6	2.676	0.656	0.626	-0.047
31	VGL2918	154	8	2.731	0.578	0.634	0.088
32	VGL3008	154	8	4.046	0.773	0.753	-0.026
33	VGL3235	154	8	4.058	0.786	0.754	-0.043

Standard genetic assessment for 7 STRs in the DLA region

Llewellin Setter

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	154	7	2.337	0.532	0.572	0.069
2	DLA I-4ACA	154	6	2.122	0.481	0.529	0.091
3	DLA I-4BCT	154	5	1.797	0.403	0.443	0.092
4	DLA1131	154	8	1.648	0.364	0.393	0.075
5	5ACA	154	4	1.265	0.195	0.210	0.070
6	5ACT	154	4	1.414	0.260	0.293	0.113
7	5BCA	154	4	1.301	0.234	0.232	-0.010

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Llewellin Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Llewellin Setter

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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