Statistics and Breed-wide Allele Frequency - Saint Bernard

Updated Nov 12, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Saint Bernard (n=90)
1011	376 365 281 180	0.061
1017	386 373 289 178	0.117
1040	380 371 277 186	0.011
1062	382 371 277 183	0.061
1068	380 373 287 181	0.167
1096	395 375 277 182	0.394
1128	384 376 287 182	0.006
1141	380 365 281 180	0.006
1160	386 369 289 176	0.089
1165	392 369 281 182	0.067
1207	386 371 277 186	0.006
1221	380 365 293 180	0.006
1240	380 369 281 182	0.006
1244	386 369 289 182	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Saint Bernard (n=90)
2001	343 324 284	0.017
2005	339 322 280	0.067
2007	351 327 280	0.006
2014	339 322 284	0.117
2021	339 324 268	0.061
2023	341 323 282	0.394
2028	345 327 288	0.011
2035	341 323 280	0.006
2053	343 324 280	0.144
2080	339 325 276	0.072
2098	343 323 282	0.094
2124	341 322 284	0.011

Allele Frequencies

#	Locus Name	Allele	Saint Bernard (n=90)
1	AHT121	92	0.050
		96	0.272
		100	0.067
		104	0.006
		106	0.078
		108	0.478
		110	0.006
		112	0.006
		114	0.039
2	AHT137	131	0.722
		133	0.006
		135	0.094
		137	0.011
		141	0.039
		147	0.067
		149	0.006
		153	0.056
3	AHTH130	119	0.061
		121	0.306
		125	0.278
		129	0.172
		131	0.111
		133	0.017
		135	0.006
		139	0.050
4	AHTh171-A	219	0.172
		221	0.217
		229	0.461
		233	0.083
		235	0.067
5	AHTh260	240	0.272
		244	0.322
		246	0.117
		248	0.283
		254	0.006
6	AHTk211	87	0.017
		89	0.028
		91	0.250
		93	0.467
		95	0.239
7	AHTk253	286	0.050
7	AHTk253	288	0.950
8	C22.279	116	0.283
		118	0.189
		120	0.017
		126	0.511
9	FH2001	132	0.917
		144	0.044
		148	0.039
10	FH2054	148	0.006
		152	0.022
		156	0.139
		160	0.283
		164	0.200
		168	0.250
		172	0.100
11	FH2848	232	0.067
		234	0.344
		236	0.350
		238	0.011
		240	0.006
		242	0.222
12	INRA21	95	0.328
		97	0.389
		101	0.283
13	INU005	110	0.017
		122	0.217
		124	0.172
		126	0.372
		128	0.006
		130	0.144
		132	0.072
14	INU030	144	0.089
		146	0.017
		148	0.194
		150	0.572
		152	0.117
		154	0.011
15	INU055	210	0.172
15	INU055	218	0.828
16	LEI004	85	0.411
		95	0.361
		107	0.228
17	REN105L03	231	0.100
		233	0.406
		235	0.083
		237	0.167
		241	0.172
		245	0.072
18	REN162C04	202	0.106
		204	0.133
		206	0.589
		208	0.156
		210	0.017
19	REN169D01	202	0.033
		212	0.383
		216	0.133
		218	0.383
		220	0.067
20	REN169O18	162	0.256
		164	0.072
		168	0.561
		170	0.111
21	REN247M23	268	0.317
		270	0.317
		272	0.339
		278	0.028
22	REN54P11	226	0.072
		228	0.544
		232	0.139
		234	0.111
		238	0.133
23	REN64E19	143	0.111
		145	0.367
		147	0.233
		149	0.061
		153	0.228
24	VGL0760	12	0.211
		13	0.267
		19.2	0.017
		20.2	0.111
		21.2	0.139
		22.2	0.233
		23.2	0.017
		24.2	0.006
25	VGL0910	12	0.211
		17.1	0.006
		18.1	0.300
		19.1	0.183
		20.1	0.233
		21.1	0.067
26	VGL1063	9	0.106
		13	0.028
		14	0.678
		15	0.017
		17	0.006
		19	0.122
		20	0.039
		21	0.006
27	VGL1165	13	0.011
		14	0.089
		18	0.044
		19	0.211
		20	0.011
		21	0.078
		23	0.139
		24	0.006
		28	0.211
		29	0.172
		30	0.028
28	VGL1828	15	0.361
		16	0.317
		17	0.017
		19	0.061
		20	0.139
		21	0.028
		23	0.006
		24	0.039
		25	0.033
29	VGL2009	9	0.222
		10	0.011
		13	0.067
		14	0.606
		15	0.094
30	VGL2409	13	0.044
		16	0.017
		17	0.744
		18	0.194
31	VGL2918	13	0.050
		14	0.367
		15	0.233
		16	0.022
		17.3	0.167
		18.3	0.028
		19.3	0.128
		21.3	0.006
32	VGL3008	15	0.033
		16	0.028
		17	0.633
		18	0.206
		18.2	0.006
		19	0.022
		20	0.072
33	VGL3235	13	0.183
		14	0.550
		15	0.022
		16	0.183
		17	0.061

Standard genetic assessment based on 33 autosomal STR loci

Saint Bernard

		N	Na	Ne	Ho	He	F
	Mean	90	5.697	3.136	0.622	0.626	0.010
	SE		0.367	0.201	0.033	0.030	0.014

Standard genetic assessment based on 7 STRs in the DLA region

Saint Bernard

		N	Na	Ne	Ho	He	F
	Mean	90	5.857	3.335	0.721	0.697	-0.033
	SE		0.315	0.131	0.018	0.011	0.017

Standard genetic assessment for individual STR loci

Saint Bernard

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	90	9	3.155	0.667	0.683	0.024
2	AHT137	90	8	1.853	0.511	0.460	-0.111
3	AHTH130	90	8	4.565	0.844	0.781	-0.081
4	AHTh171-A	90	5	3.326	0.622	0.699	0.110
5	AHTh260	90	5	3.678	0.767	0.728	-0.053
6	AHTk211	90	5	2.955	0.633	0.662	0.043
7	AHTk253	90	2	1.105	0.100	0.095	-0.053
8	C22.279	90	4	2.649	0.589	0.623	0.054
9	FH2001	90	3	1.185	0.167	0.156	-0.067
10	FH2054	90	7	4.704	0.833	0.787	-0.058
11	FH2848	90	6	3.388	0.644	0.705	0.086
12	INRA21	90	3	2.950	0.678	0.661	-0.025
13	INU005	90	7	4.140	0.811	0.758	-0.069
14	INU030	90	6	2.583	0.678	0.613	-0.106
15	INU055	90	2	1.399	0.233	0.285	0.182
16	LEI004	90	3	2.847	0.700	0.649	-0.079
17	REN105L03	90	6	4.097	0.733	0.756	0.030
18	REN162C04	90	5	2.499	0.567	0.600	0.055
19	REN169D01	90	5	3.152	0.678	0.683	0.007
20	REN169O18	90	4	2.514	0.533	0.602	0.114
21	REN247M23	90	4	3.163	0.722	0.684	-0.056
22	REN54P11	90	5	2.849	0.578	0.649	0.110
23	REN64E19	90	5	3.893	0.722	0.743	0.028
24	VGL0760	90	8	4.942	0.856	0.798	-0.073
25	VGL0910	90	6	4.403	0.867	0.773	-0.121
26	VGL1063	90	8	2.049	0.511	0.512	0.002
27	VGL1165	90	11	6.449	0.833	0.845	0.014
28	VGL1828	90	9	3.885	0.711	0.743	0.042
29	VGL2009	90	5	2.328	0.511	0.570	0.104
30	VGL2409	90	4	1.683	0.333	0.406	0.178
31	VGL2918	90	8	4.223	0.756	0.763	0.010
32	VGL3008	90	7	2.217	0.500	0.549	0.089
33	VGL3235	90	5	2.674	0.622	0.626	0.006

Standard genetic assessment for 7 STRs in the DLA region

Saint Bernard

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	90	7	3.964	0.778	0.748	-0.040
2	DLA I-4ACA	90	6	3.637	0.733	0.725	-0.011
3	DLA I-4BCT	90	5	3.159	0.711	0.683	-0.040
4	DLA1131	90	7	3.487	0.767	0.713	-0.075
5	5ACA	90	5	2.987	0.622	0.665	0.065
6	5ACT	90	5	2.966	0.700	0.663	-0.056
7	5BCA	90	6	3.141	0.733	0.682	-0.076

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Saint Bernard

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Saint Bernard

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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